Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99975 * 2 1 4 4 H 1.48509 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47316 * 299.99837 * 3 2 1 6 6 H 1.48502 * 109.47393 * 60.00075 * 3 2 1 7 7 C 1.37878 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99872 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47114 * 185.01699 * 9 7 2 11 11 C 1.46899 * 111.00028 * 295.07953 * 10 9 7 12 12 C 1.53235 * 109.33951 * 187.25478 * 11 10 9 13 13 N 1.47078 * 108.52274 * 306.17158 * 12 11 10 14 14 C 1.37119 * 120.88608 * 231.18979 * 13 12 11 15 15 N 1.31216 * 126.51743 * 359.97438 * 14 13 12 16 16 C 1.31587 * 120.35924 * 179.71955 * 15 14 13 17 17 O 1.22165 * 122.61682 * 180.31902 * 16 15 14 18 18 C 1.46801 * 114.77012 * 0.49792 * 16 15 14 19 19 C 1.36355 * 128.20047 * 179.83724 * 18 16 15 20 20 C 1.41340 * 120.00089 * 179.67571 * 19 18 16 21 21 C 1.37180 * 125.48119 * 180.02562 * 20 19 18 22 22 C 1.37423 * 113.19474 * 180.02562 * 21 20 19 23 23 C 1.33874 * 115.13801 * 0.27166 * 22 21 20 24 24 S 1.70597 * 111.03568 * 359.58034 * 23 22 21 25 25 S 1.77270 * 126.52709 * 180.02562 * 14 13 12 26 26 C 1.47083 * 118.23758 * 51.45797 * 13 12 11 27 27 C 1.46897 * 110.99997 * 59.38616 * 10 9 7 28 28 H 0.97002 * 119.99740 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47053 * 65.01650 * 9 7 2 30 30 H 1.09007 * 109.47157 * 305.02209 * 9 7 2 31 31 H 1.09002 * 109.49066 * 67.29476 * 11 10 9 32 32 H 1.09003 * 109.51648 * 307.22772 * 11 10 9 33 33 H 1.09001 * 109.62891 * 186.46449 * 12 11 10 34 34 H 1.08999 * 109.79185 * 65.97461 * 12 11 10 35 35 H 1.08002 * 120.00000 * 359.68162 * 19 18 16 36 36 H 1.07997 * 123.40459 * 0.05486 * 21 20 19 37 37 H 1.08007 * 122.42967 * 180.02562 * 22 21 20 38 38 H 1.07998 * 124.47558 * 179.72424 * 23 22 21 39 39 H 1.09002 * 109.62694 * 68.24984 * 26 13 12 40 40 H 1.08997 * 109.63157 * 188.83351 * 26 13 12 41 41 H 1.09006 * 109.49021 * 292.70493 * 27 10 9 42 42 H 1.08999 * 109.49832 * 52.78140 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2009 -3.6130 0.1223 11 6 3.0771 -3.6887 -1.0544 12 6 3.9253 -4.9624 -0.9745 13 7 4.6211 -4.9799 0.3212 14 6 5.9752 -5.1842 0.3903 15 7 6.7879 -5.3803 -0.6211 16 6 8.0751 -5.5590 -0.4150 17 8 8.8691 -5.7392 -1.3258 18 6 8.4822 -5.5291 0.9952 19 6 9.7329 -5.6853 1.5153 20 6 9.9306 -5.6174 2.9131 21 6 11.1350 -5.7574 3.5547 22 6 11.0365 -5.6467 4.9209 23 6 9.8001 -5.4302 5.3863 24 16 8.6722 -5.3405 4.1096 25 16 6.9609 -5.2348 1.8628 26 6 3.8249 -4.7784 1.5414 27 6 2.9816 -3.5061 1.3620 28 1 -0.4850 0.8401 -0.0004 29 1 0.6938 -2.5970 -0.9312 30 1 0.5582 -2.5188 0.8419 31 1 3.7311 -2.8170 -1.0775 32 1 2.4701 -3.7121 -1.9595 33 1 4.6565 -4.9667 -1.7828 34 1 3.2831 -5.8392 -1.0570 35 1 10.5726 -5.8609 0.8591 36 1 12.0665 -5.9360 3.0383 37 1 11.8939 -5.7324 5.5723 38 1 9.5502 -5.3240 6.4316 39 1 3.1706 -5.6361 1.6974 40 1 4.4897 -4.6610 2.3972 41 1 3.6370 -2.6369 1.3053 42 1 2.3050 -3.3972 2.2097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028120611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = 69.417929 kcal Electronic energy + Delta-G solvation = -26789.278846 eV Core-core repulsion = 22988.599614 eV Total energy + Delta-G solvation = -3800.679232 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 363.082 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03306 -39.07499 -38.32810 -36.39778 -34.73564 -34.05152 -32.47987 -31.14244 -29.19993 -28.45098 -25.92978 -25.30581 -23.83041 -23.74012 -22.68050 -21.92458 -20.42233 -19.88191 -19.07354 -18.41381 -17.30660 -17.02563 -16.46203 -15.91624 -15.69090 -15.31076 -15.06369 -14.88602 -14.69952 -14.53609 -14.04908 -13.86178 -13.76826 -13.72766 -13.33478 -13.08621 -12.68047 -12.47822 -12.22148 -11.99622 -11.78080 -11.43735 -11.32466 -11.26357 -11.18667 -11.09333 -10.89704 -10.79561 -10.46709 -10.06394 -10.01902 -9.81032 -9.46435 -9.24884 -8.86524 -8.58351 -8.57294 -7.91613 -7.49397 -6.18156 -4.28057 -0.44697 0.21953 0.79425 1.24990 1.35441 1.66776 2.06080 2.45296 2.50792 3.17962 3.27314 3.30498 3.53974 3.95752 4.29231 4.40042 4.62823 4.65632 4.74647 4.89153 4.98644 5.06753 5.09089 5.17214 5.21261 5.32856 5.36791 5.45051 5.55761 5.61898 5.69528 5.86836 5.89188 6.02808 6.16488 6.36379 6.44032 6.45790 6.67449 7.00090 7.34207 7.61336 7.68473 7.76538 7.95350 7.96790 8.08682 8.80987 9.40494 10.87318 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.012172 B = 0.002581 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.814473 B =10846.131745 C =11698.255897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.556 4.556 8 H 0.057 0.943 9 C 0.188 3.812 10 N -0.541 5.541 11 C 0.046 3.954 12 C 0.115 3.885 13 N -0.517 5.517 14 C 0.487 3.513 15 N -0.651 5.651 16 C 0.556 3.444 17 O -0.478 6.478 18 C -0.253 4.253 19 C 0.074 3.926 20 C -0.217 4.217 21 C -0.090 4.090 22 C -0.147 4.147 23 C -0.245 4.245 24 S 0.229 5.771 25 S -0.048 6.048 26 C 0.109 3.891 27 C 0.050 3.950 28 H 0.263 0.737 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.150 0.850 37 H 0.142 0.858 38 H 0.167 0.833 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.052 0.948 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.276 -13.366 11.171 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.595 4.595 8 H 0.075 0.925 9 C 0.063 3.937 10 N -0.265 5.265 11 C -0.083 4.083 12 C -0.009 4.009 13 N -0.226 5.226 14 C 0.110 3.890 15 N -0.403 5.403 16 C 0.337 3.663 17 O -0.355 6.355 18 C -0.375 4.375 19 C 0.045 3.955 20 C -0.335 4.335 21 C -0.124 4.124 22 C -0.178 4.178 23 C -0.385 4.385 24 S 0.499 5.501 25 S 0.193 5.807 26 C -0.013 4.013 27 C -0.080 4.080 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.181 0.819 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.184 0.816 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.030 -13.409 11.096 22.355 hybrid contribution 3.000 1.548 -0.303 3.389 sum 17.029 -11.861 10.793 23.392 Atomic orbital electron populations 1.69938 1.06014 1.26990 1.49601 1.24941 0.94762 0.99236 0.94602 0.86599 0.80149 0.83837 0.77829 1.19837 1.20808 1.20814 1.21725 0.93261 0.92027 1.52479 0.92536 1.19789 0.90506 0.85088 0.98305 1.62557 1.16728 1.47065 1.00144 1.22335 0.95393 0.94795 0.95784 1.22401 0.95676 1.00241 0.82551 1.47022 1.00431 1.64331 1.10861 1.24639 0.89304 0.84243 0.90817 1.66609 1.05241 1.38393 1.30079 1.18663 0.84505 0.76593 0.86579 1.90849 1.53309 1.44383 1.46911 1.26089 0.96486 1.15345 0.99587 1.19957 0.94638 0.89474 0.91441 1.22670 0.98165 1.15625 0.97005 1.20952 0.97404 1.00059 0.93965 1.19989 0.97743 1.04820 0.95202 1.25604 0.98500 1.09131 1.05227 1.83183 1.08966 1.63834 0.94093 1.84974 1.01611 1.83648 1.10469 1.22558 0.93784 1.01222 0.83691 1.22361 0.96382 0.93751 0.95506 0.92673 0.94993 0.94314 0.93395 0.89299 0.88056 0.89617 0.81886 0.83221 0.84060 0.81577 0.88796 0.89737 0.93026 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.70 13.29 55.43 0.74 -23.96 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.56 -14.11 7.75 -34.44 -0.27 -14.37 16 8 H 0.06 1.45 5.88 -52.49 -0.31 1.14 16 9 C 0.19 4.33 5.11 -4.98 -0.03 4.30 16 10 N -0.54 -9.82 4.83 -235.46 -1.14 -10.96 16 11 C 0.05 0.78 5.24 -3.70 -0.02 0.76 16 12 C 0.11 1.60 6.67 -3.60 -0.02 1.57 16 13 N -0.52 -7.13 3.07 -172.55 -0.53 -7.65 16 14 C 0.49 7.16 8.09 -87.85 -0.71 6.45 16 15 N -0.65 -11.20 9.58 -13.40 -0.13 -11.33 16 16 C 0.56 9.59 8.02 -14.20 -0.11 9.48 16 17 O -0.48 -9.41 17.97 4.77 0.09 -9.32 16 18 C -0.25 -3.45 6.52 -36.80 -0.24 -3.69 16 19 C 0.07 0.81 9.83 -39.08 -0.38 0.43 16 20 C -0.22 -2.09 6.21 -38.79 -0.24 -2.33 16 21 C -0.09 -0.69 10.26 -40.26 -0.41 -1.11 16 22 C -0.15 -1.03 10.14 -41.41 -0.42 -1.45 16 23 C -0.25 -1.80 10.92 29.20 0.32 -1.48 16 24 S 0.23 2.08 19.08 -101.21 -1.93 0.15 16 25 S -0.05 -0.59 17.80 -101.21 -1.80 -2.39 16 26 C 0.11 1.33 6.68 -3.36 -0.02 1.30 16 27 C 0.05 0.79 5.17 -3.46 -0.02 0.77 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.05 0.92 6.92 -51.93 -0.36 0.57 16 32 H 0.09 1.46 8.06 -51.93 -0.42 1.05 16 33 H 0.10 1.46 7.34 -51.93 -0.38 1.08 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 38 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.88 6.68 -51.93 -0.35 0.53 16 41 H 0.05 0.94 6.79 -51.93 -0.35 0.59 16 42 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -31.42 371.35 -11.91 -43.32 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -5.10 Total: -1.38 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -2.68 Total: 2.34 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -1.06 Total: -53.90 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -3.73 Total: -2.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.42 -11.91 -43.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028120611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.743 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds