Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86802 * 120.00334 * 2 1 4 4 H 1.48501 * 109.46996 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47230 * 29.99758 * 3 2 1 6 6 H 1.48499 * 109.47200 * 149.99952 * 3 2 1 7 7 C 1.39911 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99856 * 175.56177 * 7 2 1 9 9 C 1.41143 * 120.00146 * 355.56060 * 7 2 1 10 10 C 1.40864 * 120.16564 * 214.77816 * 9 7 2 11 11 C 1.36383 * 119.83198 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16235 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.82927 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99972 * 35.28812 * 13 12 11 15 15 O 1.21279 * 119.99873 * 355.70892 * 14 13 12 16 16 C 1.50702 * 119.99787 * 175.70494 * 14 13 12 17 17 C 1.53003 * 109.46595 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46595 * 180.02562 * 17 16 14 19 19 C 1.38248 * 119.99629 * 265.25625 * 18 17 16 20 20 C 1.38201 * 120.02228 * 180.30063 * 19 18 17 21 21 C 1.38375 * 120.01564 * 359.72600 * 20 19 18 22 22 Cl 1.73599 * 120.00533 * 180.02562 * 21 20 19 23 23 C 1.38305 * 119.98853 * 359.97438 * 21 20 19 24 24 C 1.38338 * 119.99151 * 85.00493 * 18 17 16 25 25 Cl 1.73602 * 120.00620 * 359.97177 * 24 18 17 26 26 C 1.39472 * 120.33770 * 0.25668 * 12 11 10 27 27 C 1.36384 * 120.16571 * 359.47929 * 26 12 11 28 28 H 0.97003 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.08775 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91853 * 179.97438 * 11 10 9 31 31 H 0.96992 * 120.00194 * 215.28864 * 13 12 11 32 32 H 1.09005 * 109.46882 * 60.00689 * 16 14 13 33 33 H 1.08995 * 109.47048 * 300.00517 * 16 14 13 34 34 H 1.09005 * 109.47085 * 60.00639 * 17 16 14 35 35 H 1.08995 * 109.47702 * 299.99942 * 17 16 14 36 36 H 1.07992 * 119.98666 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.98820 * 179.70209 * 20 19 18 38 38 H 1.08006 * 120.01579 * 180.02562 * 23 21 20 39 39 H 1.07994 * 119.92149 * 179.74032 * 26 12 11 40 40 H 1.08002 * 120.08369 * 180.25763 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0081 -1.2117 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3056 -2.4321 0.0957 10 6 1.8648 -3.5180 0.7975 11 6 1.1802 -4.6943 0.8848 12 6 -0.0704 -4.8238 0.2807 13 7 -0.7631 -6.0281 0.3737 14 6 -0.6813 -6.7676 1.4976 15 8 0.0559 -6.4239 2.3972 16 6 -1.5060 -8.0212 1.6364 17 6 -1.2287 -8.6661 2.9959 18 6 -2.0530 -9.9201 3.1344 19 6 -3.2795 -9.8742 3.7706 20 6 -4.0330 -11.0251 3.9034 21 6 -3.5628 -12.2229 3.3947 22 17 -4.5098 -13.6683 3.5611 23 6 -2.3386 -12.2682 2.7527 24 6 -1.5844 -11.1159 2.6203 25 17 -0.0475 -11.1718 1.8151 26 6 -0.6280 -3.7551 -0.4208 27 6 0.0423 -2.5709 -0.5121 28 1 -0.4849 0.8401 -0.0004 29 1 2.8331 -3.4193 1.2653 30 1 1.6078 -5.5278 1.4221 31 1 -1.3044 -6.3350 -0.3703 32 1 -1.2421 -8.7195 0.8421 33 1 -2.5641 -7.7701 1.5627 34 1 -1.4929 -7.9676 3.7900 35 1 -0.1707 -8.9172 3.0700 36 1 -3.6469 -8.9396 4.1679 37 1 -4.9889 -10.9896 4.4048 38 1 -1.9713 -13.2029 2.3550 39 1 -1.5949 -3.8642 -0.8895 40 1 -0.3926 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028440808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = -15.547809 kcal Electronic energy + Delta-G solvation = -25440.642712 eV Core-core repulsion = 21464.065831 eV Total energy + Delta-G solvation = -3976.576881 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.20289 -39.54451 -37.38084 -37.14011 -36.66200 -34.55758 -34.03727 -32.90847 -31.37440 -30.14902 -29.56264 -28.68322 -25.65699 -24.22365 -23.41595 -21.91836 -21.31014 -20.63548 -19.56205 -17.78985 -17.36547 -16.91296 -16.62449 -16.34673 -15.63598 -15.23772 -15.11879 -14.59064 -14.45175 -14.08708 -13.96107 -13.61725 -13.48269 -12.84491 -12.80222 -12.66490 -12.31864 -12.27393 -12.10863 -12.00177 -11.69435 -11.43405 -11.40900 -11.34312 -11.17891 -11.13725 -11.05471 -10.95136 -10.72372 -10.03040 -9.50416 -9.44085 -9.39857 -9.16499 -8.96804 -8.85272 -7.54998 -6.86565 -6.62131 -4.34499 0.52061 0.63943 1.43857 1.90111 2.54877 2.96662 3.01954 3.08106 3.09908 3.13953 3.34270 3.69961 3.97914 4.22769 4.38640 4.47642 4.69303 4.70501 4.81237 4.95871 5.02878 5.19813 5.24020 5.49915 5.51680 5.56632 5.65786 5.70041 5.95978 6.03810 6.15342 6.18867 6.44855 6.75740 6.91904 7.06848 7.20921 7.29608 7.63678 7.74555 7.86887 8.06205 8.26348 8.31521 8.62220 8.75042 8.92637 9.00073 10.28981 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.001606 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.154870 B =17434.574222 C =17907.561165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.099 3.901 10 C -0.205 4.205 11 C -0.086 4.086 12 C 0.004 3.996 13 N -0.653 5.653 14 C 0.499 3.501 15 O -0.531 6.531 16 C -0.133 4.133 17 C -0.071 4.071 18 C -0.062 4.062 19 C -0.091 4.091 20 C -0.103 4.103 21 C -0.031 4.031 22 Cl -0.063 7.063 23 C -0.101 4.101 24 C -0.025 4.025 25 Cl -0.049 7.049 26 C -0.122 4.122 27 C -0.141 4.141 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.395 0.605 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.091 0.909 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -22.552 4.173 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.097 3.903 10 C -0.225 4.225 11 C -0.106 4.106 12 C -0.089 4.089 13 N -0.295 5.295 14 C 0.286 3.714 15 O -0.408 6.408 16 C -0.173 4.173 17 C -0.109 4.109 18 C -0.063 4.063 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.058 4.058 22 Cl -0.034 7.034 23 C -0.120 4.120 24 C -0.052 4.052 25 Cl -0.020 7.020 26 C -0.142 4.142 27 C -0.161 4.161 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.229 0.771 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.162 0.838 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.534 -22.280 4.775 24.700 hybrid contribution -0.062 0.418 -0.375 0.565 sum -9.595 -21.862 4.400 24.277 Atomic orbital electron populations 1.69761 1.07284 1.28678 1.38241 1.25877 0.94943 1.01156 0.92569 0.86198 0.80254 0.80499 0.79036 1.19534 1.20309 1.18727 1.19497 0.94731 0.90229 1.44735 0.90626 1.17727 0.92315 0.92019 0.88287 1.20811 1.01210 0.94991 1.05515 1.20404 0.92776 0.97863 0.99532 1.17279 0.94225 0.85901 1.11460 1.43022 1.48833 1.21373 1.16296 1.20478 0.83482 0.85212 0.82247 1.90691 1.39131 1.70911 1.40054 1.21592 1.01112 0.95761 0.98820 1.20441 1.00403 0.92509 0.97554 1.20003 0.95377 0.94409 0.96558 1.21088 0.92951 0.98660 0.98235 1.21178 1.00848 0.90739 0.99420 1.20739 0.93644 0.88705 1.02734 1.98389 1.71619 1.36819 1.96543 1.20890 0.93023 0.98400 0.99731 1.20715 0.89658 0.94306 1.00502 1.98408 1.27462 1.98590 1.77572 1.20319 0.98368 0.93202 1.02286 1.21192 0.97296 0.95553 1.02079 0.91165 0.88622 0.87456 0.77116 0.89057 0.88923 0.89219 0.89037 0.83769 0.84227 0.83903 0.89115 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.09 10.60 55.55 0.59 -20.50 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.66 16 3 Si 0.92 19.00 29.56 -169.99 -5.03 13.97 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.31 9.02 -37.85 -0.34 -12.65 16 8 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.10 2.65 5.55 -106.81 -0.59 2.06 16 10 C -0.21 -5.20 9.74 -39.26 -0.38 -5.58 16 11 C -0.09 -2.04 8.61 -39.78 -0.34 -2.39 16 12 C 0.00 0.08 6.31 -83.57 -0.53 -0.45 16 13 N -0.65 -11.00 5.30 -9.74 -0.05 -11.05 16 14 C 0.50 8.10 7.66 -10.98 -0.08 8.01 16 15 O -0.53 -10.82 13.40 5.56 0.07 -10.74 16 16 C -0.13 -1.44 5.68 -27.88 -0.16 -1.60 16 17 C -0.07 -0.76 4.14 -27.88 -0.12 -0.87 16 18 C -0.06 -0.56 5.14 -104.58 -0.54 -1.09 16 19 C -0.09 -0.67 9.68 -39.59 -0.38 -1.06 16 20 C -0.10 -0.72 9.83 -39.54 -0.39 -1.10 16 21 C -0.03 -0.24 6.32 -39.51 -0.25 -0.49 16 22 Cl -0.06 -0.46 28.96 -51.86 -1.50 -1.96 16 23 C -0.10 -0.81 9.62 -39.51 -0.38 -1.19 16 24 C -0.02 -0.22 6.31 -39.50 -0.25 -0.47 16 25 Cl -0.05 -0.48 27.16 -51.86 -1.41 -1.88 16 26 C -0.12 -2.74 9.90 -39.79 -0.39 -3.13 16 27 C -0.14 -3.61 8.62 -39.25 -0.34 -3.95 16 28 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 29 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 30 H 0.11 2.52 6.22 -52.49 -0.33 2.19 16 31 H 0.40 5.16 8.82 -40.82 -0.36 4.80 16 32 H 0.09 0.88 7.90 -51.93 -0.41 0.47 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.98 8.01 -51.93 -0.42 0.57 16 35 H 0.09 1.10 7.08 -51.93 -0.37 0.73 16 36 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.13 3.47 6.13 -52.49 -0.32 3.15 16 LS Contribution 372.59 15.07 5.61 5.61 Total: -1.00 -30.11 372.59 -11.55 -41.66 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -4.29 Total: 9.18 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: -5.56 Total: -24.29 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.54 Total: -31.55 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -2.91 Total: -3.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.11 -11.55 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028440808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.115 kcal (2) G-P(sol) polarization free energy of solvation -30.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds