Wall clock time and date at job start Tue Mar 31 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86802 * 120.00334 * 2 1 4 4 H 1.48501 * 109.46996 * 269.99769 * 3 2 1 5 5 H 1.48496 * 109.47230 * 29.99758 * 3 2 1 6 6 H 1.48499 * 109.47200 * 149.99952 * 3 2 1 7 7 C 1.39911 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99856 * 175.56177 * 7 2 1 9 9 C 1.41143 * 120.00146 * 355.56060 * 7 2 1 10 10 C 1.40864 * 120.16564 * 214.77816 * 9 7 2 11 11 C 1.36383 * 119.83198 * 180.02562 * 10 9 7 12 12 C 1.39488 * 120.16235 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.82927 * 179.97438 * 12 11 10 14 14 C 1.34783 * 119.99972 * 35.28812 * 13 12 11 15 15 O 1.21279 * 119.99873 * 355.70892 * 14 13 12 16 16 C 1.50702 * 119.99787 * 175.70494 * 14 13 12 17 17 C 1.53003 * 109.46595 * 180.02562 * 16 14 13 18 18 C 1.50702 * 109.46595 * 180.02562 * 17 16 14 19 19 C 1.38248 * 119.99629 * 265.25625 * 18 17 16 20 20 C 1.38201 * 120.02228 * 180.30063 * 19 18 17 21 21 C 1.38375 * 120.01564 * 359.72600 * 20 19 18 22 22 Cl 1.73599 * 120.00533 * 180.02562 * 21 20 19 23 23 C 1.38305 * 119.98853 * 359.97438 * 21 20 19 24 24 C 1.38338 * 119.99151 * 85.00493 * 18 17 16 25 25 Cl 1.73602 * 120.00620 * 359.97177 * 24 18 17 26 26 C 1.39472 * 120.33770 * 0.25668 * 12 11 10 27 27 C 1.36384 * 120.16571 * 359.47929 * 26 12 11 28 28 H 0.97003 * 119.99552 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.08775 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.91853 * 179.97438 * 11 10 9 31 31 H 0.96992 * 120.00194 * 215.28864 * 13 12 11 32 32 H 1.09005 * 109.46882 * 60.00689 * 16 14 13 33 33 H 1.08995 * 109.47048 * 300.00517 * 16 14 13 34 34 H 1.09005 * 109.47085 * 60.00639 * 17 16 14 35 35 H 1.08995 * 109.47702 * 299.99942 * 17 16 14 36 36 H 1.07992 * 119.98666 * 0.02562 * 19 18 17 37 37 H 1.07999 * 119.98820 * 179.70209 * 20 19 18 38 38 H 1.08006 * 120.01579 * 180.02562 * 23 21 20 39 39 H 1.07994 * 119.92149 * 179.74032 * 26 12 11 40 40 H 1.08002 * 120.08369 * 180.25763 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0463 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0081 -1.2117 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3056 -2.4321 0.0957 10 6 1.8648 -3.5180 0.7975 11 6 1.1802 -4.6943 0.8848 12 6 -0.0704 -4.8238 0.2807 13 7 -0.7631 -6.0281 0.3737 14 6 -0.6813 -6.7676 1.4976 15 8 0.0559 -6.4239 2.3972 16 6 -1.5060 -8.0212 1.6364 17 6 -1.2287 -8.6661 2.9959 18 6 -2.0530 -9.9201 3.1344 19 6 -3.2795 -9.8742 3.7706 20 6 -4.0330 -11.0251 3.9034 21 6 -3.5628 -12.2229 3.3947 22 17 -4.5098 -13.6683 3.5611 23 6 -2.3386 -12.2682 2.7527 24 6 -1.5844 -11.1159 2.6203 25 17 -0.0475 -11.1718 1.8151 26 6 -0.6280 -3.7551 -0.4208 27 6 0.0423 -2.5709 -0.5121 28 1 -0.4849 0.8401 -0.0004 29 1 2.8331 -3.4193 1.2653 30 1 1.6078 -5.5278 1.4221 31 1 -1.3044 -6.3350 -0.3703 32 1 -1.2421 -8.7195 0.8421 33 1 -2.5641 -7.7701 1.5627 34 1 -1.4929 -7.9676 3.7900 35 1 -0.1707 -8.9172 3.0700 36 1 -3.6469 -8.9396 4.1679 37 1 -4.9889 -10.9896 4.4048 38 1 -1.9713 -13.2029 2.3550 39 1 -1.5949 -3.8642 -0.8895 40 1 -0.3926 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000028440808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:30 Heat of formation + Delta-G solvation = -29.571643 kcal Electronic energy + Delta-G solvation = -25441.250831 eV Core-core repulsion = 21464.065831 eV Total energy + Delta-G solvation = -3977.185000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29754 -40.55869 -39.07581 -37.80881 -37.31429 -36.18191 -34.97030 -34.64924 -31.96244 -31.51121 -31.23371 -30.19068 -27.12729 -25.49854 -24.00172 -23.39129 -22.70160 -22.04383 -21.00740 -19.27123 -18.46453 -18.29063 -17.77546 -17.33630 -17.01055 -16.34990 -16.32927 -15.71795 -15.50007 -15.13261 -15.00655 -14.83499 -14.63213 -14.33019 -14.17058 -13.94235 -13.59824 -13.48985 -13.25365 -13.09240 -12.95684 -12.84027 -12.74187 -12.66259 -12.47011 -12.08439 -11.96916 -11.89099 -11.82533 -11.75180 -11.38743 -11.19160 -10.77338 -10.54999 -9.99310 -9.63123 -9.45672 -8.71519 -8.49970 -6.32538 -0.09841 0.05809 0.80885 0.82875 1.14485 1.27513 1.39631 1.45169 1.53584 1.83924 2.24012 2.29344 2.48268 2.81232 3.56705 3.64258 3.68626 3.89503 3.93073 4.07257 4.21370 4.28727 4.33731 4.41602 4.53677 4.65856 4.69998 4.80479 4.94981 4.95930 5.09990 5.12803 5.15690 5.18720 5.34216 5.36402 5.45519 5.55470 5.70507 5.92409 6.03902 6.15087 6.40269 6.68158 6.76356 6.97324 7.01065 7.43739 8.42694 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.028272 B = 0.001606 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.154870 B =17434.574222 C =17907.561165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.499 4.499 8 H 0.071 0.929 9 C 0.065 3.935 10 C -0.221 4.221 11 C -0.099 4.099 12 C 0.023 3.977 13 N -0.647 5.647 14 C 0.498 3.502 15 O -0.574 6.574 16 C -0.118 4.118 17 C -0.067 4.067 18 C -0.069 4.069 19 C -0.087 4.087 20 C -0.099 4.099 21 C -0.035 4.035 22 Cl -0.059 7.059 23 C -0.105 4.105 24 C -0.033 4.033 25 Cl -0.062 7.062 26 C -0.120 4.120 27 C -0.158 4.158 28 H 0.285 0.715 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.418 0.582 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.151 0.849 39 H 0.126 0.874 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 -23.644 4.244 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.530 4.530 8 H 0.089 0.911 9 C 0.063 3.937 10 C -0.241 4.241 11 C -0.119 4.119 12 C -0.071 4.071 13 N -0.292 5.292 14 C 0.288 3.712 15 O -0.453 6.453 16 C -0.157 4.157 17 C -0.105 4.105 18 C -0.070 4.070 19 C -0.105 4.105 20 C -0.118 4.118 21 C -0.062 4.062 22 Cl -0.030 7.030 23 C -0.124 4.124 24 C -0.060 4.060 25 Cl -0.033 7.033 26 C -0.140 4.140 27 C -0.179 4.179 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.126 0.874 31 H 0.255 0.745 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.169 0.831 39 H 0.144 0.856 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.646 -23.422 4.823 26.599 hybrid contribution 0.488 0.538 -0.340 0.802 sum -11.158 -22.885 4.483 25.852 Atomic orbital electron populations 1.69821 1.08522 1.29925 1.38650 1.26719 0.95826 1.04233 0.91602 0.85118 0.78668 0.75892 0.79472 1.18404 1.19344 1.18787 1.19714 0.94786 0.91409 1.47096 0.91081 1.18040 0.93469 0.92689 0.89526 1.20927 1.01559 0.95623 1.05983 1.20527 0.93810 0.97382 1.00150 1.17337 0.93391 0.87515 1.08815 1.42995 1.48646 1.19830 1.17759 1.21442 0.82808 0.85981 0.80987 1.90683 1.41003 1.72148 1.41493 1.21586 1.01594 0.92929 0.99633 1.20320 0.99725 0.93234 0.97213 1.19866 0.95919 0.93485 0.97745 1.21295 0.92175 0.99646 0.97414 1.21434 1.01490 0.90123 0.98704 1.20873 0.93565 0.89191 1.02599 1.98394 1.71432 1.36721 1.96499 1.20991 0.93168 0.98470 0.99787 1.20770 0.89364 0.94777 1.01051 1.98405 1.28385 1.98625 1.77876 1.20579 0.99376 0.92153 1.01883 1.21178 0.97440 0.96522 1.02716 0.90482 0.88813 0.87397 0.74474 0.87268 0.85790 0.89731 0.90925 0.81927 0.82138 0.83149 0.85636 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.49 10.60 21.82 0.23 -44.25 16 2 C 0.03 1.44 5.42 85.24 0.46 1.91 16 3 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.50 -27.71 9.02 23.39 0.21 -27.49 16 8 H 0.07 3.83 7.85 -2.91 -0.02 3.80 16 9 C 0.07 3.62 5.55 -21.28 -0.12 3.50 16 10 C -0.22 -11.62 9.74 22.48 0.22 -11.40 16 11 C -0.10 -4.76 8.61 22.14 0.19 -4.57 16 12 C 0.02 0.99 6.31 38.56 0.24 1.23 16 13 N -0.65 -20.37 5.30 -303.10 -1.61 -21.98 16 14 C 0.50 15.28 7.66 87.66 0.67 15.95 16 15 O -0.57 -23.15 13.40 -3.03 -0.04 -23.19 16 16 C -0.12 -2.23 5.68 29.85 0.17 -2.06 16 17 C -0.07 -1.31 4.14 29.85 0.12 -1.19 16 18 C -0.07 -1.08 5.14 -19.84 -0.10 -1.18 16 19 C -0.09 -1.02 9.68 22.26 0.22 -0.81 16 20 C -0.10 -1.07 9.83 22.29 0.22 -0.85 16 21 C -0.04 -0.46 6.32 22.32 0.14 -0.32 16 22 Cl -0.06 -0.74 28.96 -2.72 -0.08 -0.82 16 23 C -0.10 -1.49 9.62 22.31 0.21 -1.28 16 24 C -0.03 -0.53 6.31 22.32 0.14 -0.39 16 25 Cl -0.06 -1.14 27.16 -2.72 -0.07 -1.21 16 26 C -0.12 -5.30 9.90 22.13 0.22 -5.08 16 27 C -0.16 -8.26 8.62 22.48 0.19 -8.07 16 28 H 0.28 13.64 8.30 -92.71 -0.77 12.87 16 29 H 0.09 4.77 8.06 -2.91 -0.02 4.75 16 30 H 0.11 5.16 6.22 -2.91 -0.02 5.14 16 31 H 0.42 9.48 8.82 -92.71 -0.82 8.67 16 32 H 0.11 1.76 7.90 -2.38 -0.02 1.74 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.73 8.01 -2.38 -0.02 1.71 16 35 H 0.07 1.70 7.08 -2.39 -0.02 1.69 16 36 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 37 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.12 6.42 6.13 -2.91 -0.02 6.40 16 Total: -1.00 -67.61 372.59 4.16 -63.45 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.28 Total: 28.72 kcal Atomic # 6 Polarization: -45.52 SS G_CDS: 3.41 Total: -42.11 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -1.38 Total: -66.23 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.15 Total: -2.03 kcal Total: -67.61 4.16 -63.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028440808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.879 kcal (2) G-P(sol) polarization free energy of solvation -67.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds