Wall clock time and date at job start Tue Mar 31 2020 05:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35983 * 117.00357 * 2 1 4 4 C 1.38722 * 119.99707 * 0.02562 * 3 2 1 5 5 C 1.38107 * 120.00210 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.99836 * 359.97438 * 5 4 3 7 7 O 1.35983 * 120.00340 * 180.02562 * 6 5 4 8 8 C 1.42903 * 116.99651 * 5.71069 * 7 6 5 9 9 C 1.38683 * 120.00372 * 0.28024 * 6 5 4 10 10 S 1.76196 * 120.00335 * 179.72365 * 9 6 5 11 11 O 1.42100 * 106.40071 * 49.17077 * 10 9 6 12 12 O 1.42098 * 106.40181 * 182.09031 * 10 9 6 13 13 N 1.65601 * 107.21711 * 295.62896 * 10 9 6 14 14 C 1.38855 * 120.00190 * 297.86742 * 13 10 9 15 15 C 1.39572 * 119.83899 * 314.64804 * 14 13 10 16 16 C 1.36338 * 120.15435 * 179.71894 * 15 14 13 17 17 C 1.40888 * 119.84138 * 0.55240 * 16 15 14 18 18 C 1.41128 * 120.15774 * 179.70404 * 17 16 15 19 19 H 1.08005 * 119.99795 * 208.21005 * 18 17 16 20 20 C 1.39868 * 120.00470 * 28.20101 * 18 17 16 21 21 N 1.30906 * 119.99541 * 11.35108 * 20 18 17 22 22 Si 1.86802 * 120.00222 * 191.35680 * 20 18 17 23 23 H 1.48494 * 109.47254 * 59.99949 * 22 20 18 24 24 H 1.48503 * 109.46948 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46811 * 300.00058 * 22 20 18 26 26 C 1.40882 * 119.68452 * 359.71892 * 17 16 15 27 27 C 1.36337 * 119.84158 * 0.02562 * 26 17 16 28 28 C 1.38156 * 119.99438 * 359.46958 * 9 6 5 29 29 H 1.08997 * 109.47382 * 59.99737 * 1 2 3 30 30 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46766 * 299.99843 * 1 2 3 32 32 H 1.08004 * 119.99814 * 359.97212 * 4 3 2 33 33 H 1.07999 * 120.00095 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46855 * 295.36831 * 8 7 6 35 35 H 1.08999 * 109.47335 * 55.36623 * 8 7 6 36 36 H 1.09000 * 109.47137 * 175.36901 * 8 7 6 37 37 H 0.96995 * 119.99738 * 117.87150 * 13 10 9 38 38 H 1.07995 * 119.92369 * 359.97438 * 15 14 13 39 39 H 1.08006 * 120.07885 * 180.27978 * 16 15 14 40 40 H 0.96997 * 119.99951 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.08146 * 179.97438 * 26 17 16 42 42 H 1.07999 * 119.92570 * 179.97438 * 27 26 17 43 43 H 1.08002 * 119.99950 * 180.23149 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9205 4.8897 -0.0005 8 6 3.0862 6.0430 0.1267 9 6 4.0585 2.5151 -0.0064 10 16 5.8180 2.6074 -0.0145 11 8 6.1768 3.5163 1.0172 12 8 6.2897 1.2681 -0.0691 13 7 6.2650 3.3192 -1.4413 14 6 5.9598 2.7054 -2.6489 15 6 6.1846 1.3373 -2.8089 16 6 5.8819 0.7270 -3.9899 17 6 5.3520 1.4830 -5.0541 18 6 5.0422 0.8593 -6.2816 19 1 5.0796 1.4264 -7.2000 20 6 4.6868 -0.4932 -6.3088 21 7 4.4248 -1.1236 -5.1919 22 14 4.5864 -1.3999 -7.9389 23 1 5.9115 -1.3637 -8.6080 24 1 4.1919 -2.8110 -7.6969 25 1 3.5751 -0.7458 -8.8076 26 6 5.1331 2.8647 -4.8872 27 6 5.4355 3.4608 -3.6989 28 6 3.4312 1.2842 -0.0006 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2123 2.3185 0.0005 33 1 1.3296 4.5113 0.0000 34 1 2.4361 6.1190 -0.7449 35 1 2.4781 5.9539 1.0269 36 1 3.7081 6.9355 0.1952 37 1 6.7401 4.1648 -1.4335 38 1 6.5953 0.7599 -1.9939 39 1 6.0521 -0.3327 -4.1108 40 1 4.1780 -2.0615 -5.2107 41 1 4.7276 3.4505 -5.6988 42 1 5.2687 4.5200 -3.5696 43 1 4.0195 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000029972274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:29 Heat of formation + Delta-G solvation = -90.625166 kcal Electronic energy + Delta-G solvation = -31082.703684 eV Core-core repulsion = 26800.038840 eV Total energy + Delta-G solvation = -4282.664843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.47849 -39.05826 -38.00612 -36.70381 -36.29820 -35.38508 -34.72365 -32.74833 -31.49050 -29.83812 -29.51758 -28.66877 -27.53711 -26.97966 -24.68919 -23.16800 -22.14312 -21.20425 -20.85015 -19.38119 -18.39107 -17.71323 -17.34453 -17.09857 -17.01351 -16.34753 -15.92210 -15.85922 -15.59098 -15.18962 -14.85724 -14.60209 -14.34102 -14.02381 -13.52678 -13.46893 -12.94452 -12.86426 -12.74660 -12.53677 -12.34169 -12.19898 -11.88755 -11.71744 -11.66502 -11.59314 -11.55175 -11.32561 -11.30000 -11.10382 -10.76430 -10.57163 -10.51540 -10.47888 -10.10862 -9.75060 -9.41425 -9.27439 -8.89046 -7.84012 -7.58719 -7.09831 -6.74788 -4.35854 0.72062 0.99283 1.40588 2.71935 3.05417 3.07011 3.08176 3.08728 3.16638 3.30669 3.36682 3.61985 3.91443 4.16019 4.55263 4.59952 4.69130 4.83772 4.95066 5.02069 5.04655 5.08594 5.24811 5.36572 5.37090 5.40915 5.62480 5.68981 5.83958 5.99176 6.18502 6.19761 6.25586 6.37188 6.42661 6.97596 7.02977 7.07606 7.17565 7.20660 7.40064 7.50499 7.60784 7.89945 8.02083 8.14423 8.24557 8.60645 8.84970 8.93755 10.18375 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.004021 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.577130 B = 6962.251137 C = 8255.117663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.074 3.926 4 C -0.119 4.119 5 C -0.191 4.191 6 C 0.190 3.810 7 O -0.308 6.308 8 C 0.028 3.972 9 C -0.656 4.656 10 S 2.690 3.310 11 O -0.967 6.967 12 O -0.954 6.954 13 N -1.025 6.025 14 C -0.005 4.005 15 C -0.122 4.122 16 C -0.145 4.145 17 C 0.109 3.891 18 C -0.456 4.456 19 H 0.077 0.923 20 C 0.072 3.928 21 N -0.792 5.792 22 Si 0.912 3.088 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.216 4.216 27 C -0.088 4.088 28 C -0.005 4.005 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.412 0.588 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.282 0.718 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 7.392 9.382 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.029 3.971 4 C -0.138 4.138 5 C -0.210 4.210 6 C 0.143 3.857 7 O -0.221 6.221 8 C -0.067 4.067 9 C -0.741 4.741 10 S 2.780 3.220 11 O -0.957 6.957 12 O -0.944 6.944 13 N -0.777 5.777 14 C -0.101 4.101 15 C -0.143 4.143 16 C -0.165 4.165 17 C 0.106 3.894 18 C -0.486 4.486 19 H 0.096 0.904 20 C -0.146 4.146 21 N -0.417 5.417 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.191 1.191 26 C -0.236 4.236 27 C -0.110 4.110 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.154 0.846 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.247 0.753 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.506 6.590 10.220 14.291 hybrid contribution -1.469 0.371 -1.104 1.875 sum -8.975 6.960 9.116 14.564 Atomic orbital electron populations 1.23046 0.78740 1.04065 1.00953 1.86139 1.20993 1.26048 1.89302 1.18858 0.92253 0.84493 1.01506 1.21238 1.00087 0.91804 1.00668 1.21012 0.93060 0.98570 1.08406 1.18131 0.90879 0.84280 0.92425 1.86123 1.36322 1.12360 1.87291 1.23120 0.96058 0.86274 1.01209 1.30156 1.27973 0.95474 1.20486 1.02450 0.73302 0.73754 0.72488 1.93538 1.82350 1.64781 1.55045 1.93541 1.78061 1.36660 1.86160 1.52268 1.69132 1.36408 1.19899 1.16822 1.14301 0.92522 0.86410 1.21215 1.00901 0.92973 0.99188 1.21059 1.01956 1.00536 0.92921 1.17728 0.87678 0.90855 0.93150 1.19539 1.40179 0.94422 0.94410 0.90439 1.25931 0.92812 0.97755 0.98056 1.69819 1.32310 1.11566 1.28035 0.86314 0.79760 0.78342 0.81975 1.18809 1.20292 1.19115 1.20645 1.10105 0.95980 0.96901 1.20271 0.99374 0.97370 0.94032 1.20064 0.92025 0.96729 0.93694 0.92649 0.88125 0.93028 0.84717 0.84588 0.92332 0.92437 0.87751 0.75266 0.85655 0.85675 0.90664 0.88726 0.89062 0.82400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.71 10.50 -19.69 -0.21 -4.91 16 3 C 0.07 1.20 6.69 -39.24 -0.26 0.94 16 4 C -0.12 -1.60 9.03 -39.45 -0.36 -1.95 16 5 C -0.19 -2.57 9.03 -39.45 -0.36 -2.93 16 6 C 0.19 3.07 6.63 -39.24 -0.26 2.81 16 7 O -0.31 -4.56 9.30 -28.78 -0.27 -4.83 16 8 C 0.03 0.27 9.82 101.05 0.99 1.26 16 9 C -0.66 -11.88 5.78 -39.45 -0.23 -12.11 16 10 S 2.69 50.98 5.20 -107.50 -0.56 50.43 16 11 O -0.97 -19.07 17.33 -62.31 -1.08 -20.15 16 12 O -0.95 -20.06 14.00 -57.17 -0.80 -20.86 16 13 N -1.02 -18.96 5.73 32.51 0.19 -18.77 16 14 C 0.00 -0.10 6.16 -83.69 -0.52 -0.62 16 15 C -0.12 -2.91 9.14 -39.77 -0.36 -3.27 16 16 C -0.14 -3.74 8.60 -39.26 -0.34 -4.08 16 17 C 0.11 2.83 5.56 -106.80 -0.59 2.24 16 18 C -0.46 -11.73 9.04 -37.88 -0.34 -12.07 16 19 H 0.08 1.90 7.87 -52.48 -0.41 1.49 16 20 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 21 N -0.79 -20.20 10.82 55.54 0.60 -19.60 16 22 Si 0.91 18.33 29.58 -169.99 -5.03 13.30 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 C -0.22 -5.09 9.74 -39.27 -0.38 -5.47 16 27 C -0.09 -1.91 9.90 -39.77 -0.39 -2.30 16 28 C -0.01 -0.10 9.48 -39.45 -0.37 -0.47 16 29 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 32 H 0.14 1.33 6.29 -52.48 -0.33 1.00 16 33 H 0.14 1.34 6.32 -52.49 -0.33 1.01 16 34 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 35 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.41 6.45 8.95 -34.47 -0.31 6.14 16 38 H 0.13 2.96 5.60 -52.49 -0.29 2.67 16 39 H 0.13 3.35 6.18 -52.48 -0.32 3.03 16 40 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 41 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.16 2.85 7.33 -52.49 -0.38 2.47 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -32.42 373.34 -9.21 -41.63 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -4.80 Total: 13.22 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: -2.87 Total: -35.09 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.79 Total: -38.37 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -2.35 Total: -50.75 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Atomic # 16 Polarization: 50.98 SS G_CDS: -0.56 Total: 50.43 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.42 -9.21 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029972274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.995 kcal (2) G-P(sol) polarization free energy of solvation -32.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds