Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35983 * 117.00357 * 2 1 4 4 C 1.38722 * 119.99707 * 0.02562 * 3 2 1 5 5 C 1.38107 * 120.00210 * 180.02562 * 4 3 2 6 6 C 1.38717 * 119.99836 * 359.97438 * 5 4 3 7 7 O 1.35983 * 120.00340 * 180.02562 * 6 5 4 8 8 C 1.42903 * 116.99651 * 5.71069 * 7 6 5 9 9 C 1.38683 * 120.00372 * 0.28024 * 6 5 4 10 10 S 1.76196 * 120.00335 * 179.72365 * 9 6 5 11 11 O 1.42100 * 106.40071 * 49.17077 * 10 9 6 12 12 O 1.42098 * 106.40181 * 182.09031 * 10 9 6 13 13 N 1.65601 * 107.21711 * 295.62896 * 10 9 6 14 14 C 1.38855 * 120.00190 * 297.86742 * 13 10 9 15 15 C 1.39572 * 119.83899 * 314.64804 * 14 13 10 16 16 C 1.36338 * 120.15435 * 179.71894 * 15 14 13 17 17 C 1.40888 * 119.84138 * 0.55240 * 16 15 14 18 18 C 1.41128 * 120.15774 * 179.70404 * 17 16 15 19 19 H 1.08005 * 119.99795 * 208.21005 * 18 17 16 20 20 C 1.39868 * 120.00470 * 28.20101 * 18 17 16 21 21 N 1.30906 * 119.99541 * 11.35108 * 20 18 17 22 22 Si 1.86802 * 120.00222 * 191.35680 * 20 18 17 23 23 H 1.48494 * 109.47254 * 59.99949 * 22 20 18 24 24 H 1.48503 * 109.46948 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46811 * 300.00058 * 22 20 18 26 26 C 1.40882 * 119.68452 * 359.71892 * 17 16 15 27 27 C 1.36337 * 119.84158 * 0.02562 * 26 17 16 28 28 C 1.38156 * 119.99438 * 359.46958 * 9 6 5 29 29 H 1.08997 * 109.47382 * 59.99737 * 1 2 3 30 30 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46766 * 299.99843 * 1 2 3 32 32 H 1.08004 * 119.99814 * 359.97212 * 4 3 2 33 33 H 1.07999 * 120.00095 * 179.97438 * 5 4 3 34 34 H 1.09002 * 109.46855 * 295.36831 * 8 7 6 35 35 H 1.08999 * 109.47335 * 55.36623 * 8 7 6 36 36 H 1.09000 * 109.47137 * 175.36901 * 8 7 6 37 37 H 0.96995 * 119.99738 * 117.87150 * 13 10 9 38 38 H 1.07995 * 119.92369 * 359.97438 * 15 14 13 39 39 H 1.08006 * 120.07885 * 180.27978 * 16 15 14 40 40 H 0.96997 * 119.99951 * 179.97438 * 21 20 18 41 41 H 1.07995 * 120.08146 * 179.97438 * 26 17 16 42 42 H 1.07999 * 119.92570 * 179.97438 * 27 26 17 43 43 H 1.08002 * 119.99950 * 180.23149 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9178 3.6056 0.0000 6 6 3.3031 3.6782 -0.0005 7 8 3.9205 4.8897 -0.0005 8 6 3.0862 6.0430 0.1267 9 6 4.0585 2.5151 -0.0064 10 16 5.8180 2.6074 -0.0145 11 8 6.1768 3.5163 1.0172 12 8 6.2897 1.2681 -0.0691 13 7 6.2650 3.3192 -1.4413 14 6 5.9598 2.7054 -2.6489 15 6 6.1846 1.3373 -2.8089 16 6 5.8819 0.7270 -3.9899 17 6 5.3520 1.4830 -5.0541 18 6 5.0422 0.8593 -6.2816 19 1 5.0796 1.4264 -7.2000 20 6 4.6868 -0.4932 -6.3088 21 7 4.4248 -1.1236 -5.1919 22 14 4.5864 -1.3999 -7.9389 23 1 5.9115 -1.3637 -8.6080 24 1 4.1919 -2.8110 -7.6969 25 1 3.5751 -0.7458 -8.8076 26 6 5.1331 2.8647 -4.8872 27 6 5.4355 3.4608 -3.6989 28 6 3.4312 1.2842 -0.0006 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 0.2123 2.3185 0.0005 33 1 1.3296 4.5113 0.0000 34 1 2.4361 6.1190 -0.7449 35 1 2.4781 5.9539 1.0269 36 1 3.7081 6.9355 0.1952 37 1 6.7401 4.1648 -1.4335 38 1 6.5953 0.7599 -1.9939 39 1 6.0521 -0.3327 -4.1108 40 1 4.1780 -2.0615 -5.2107 41 1 4.7276 3.4505 -5.6988 42 1 5.2687 4.5200 -3.5696 43 1 4.0195 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000029972274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -112.633268 kcal Electronic energy + Delta-G solvation = -31083.658026 eV Core-core repulsion = 26800.038840 eV Total energy + Delta-G solvation = -4283.619186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.102 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.57132 -40.10116 -39.81943 -38.25998 -37.42609 -36.97663 -36.48509 -34.53495 -32.63459 -31.39489 -30.88980 -30.49648 -28.36054 -27.85820 -26.53517 -24.34510 -23.25822 -23.05456 -22.65683 -20.70767 -19.75954 -19.21261 -18.78277 -18.67231 -18.33858 -17.74773 -17.22606 -16.98058 -16.88643 -16.51746 -16.11211 -15.83287 -15.77820 -15.42800 -15.27900 -14.62211 -14.53912 -14.12165 -13.95969 -13.86702 -13.81896 -13.59537 -13.46829 -13.25797 -13.20551 -12.97780 -12.77223 -12.75040 -12.54444 -12.43190 -12.40287 -12.27719 -11.96696 -11.64526 -11.54086 -11.48063 -11.09304 -10.69144 -10.58131 -9.46955 -8.97940 -8.93800 -8.57331 -6.28641 -0.67557 -0.32023 0.24526 0.92554 1.17424 1.41138 1.52528 1.54483 1.93218 2.13732 2.23341 2.26832 2.38313 2.69132 2.76563 3.42472 3.58951 3.72674 3.72884 4.03751 4.11744 4.33321 4.37539 4.38225 4.42208 4.45262 4.50651 4.56813 4.58171 4.65427 4.71792 4.75137 4.92821 5.05790 5.10158 5.15973 5.25694 5.32631 5.38243 5.72961 5.81603 6.04720 6.09246 6.11975 6.33107 6.36703 6.43257 6.71229 6.95141 7.05031 8.37967 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.009433 B = 0.004021 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.577130 B = 6962.251137 C = 8255.117663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.339 6.339 3 C 0.063 3.937 4 C -0.106 4.106 5 C -0.182 4.182 6 C 0.183 3.817 7 O -0.328 6.328 8 C 0.012 3.988 9 C -0.678 4.678 10 S 2.705 3.295 11 O -0.975 6.975 12 O -0.985 6.985 13 N -1.020 6.020 14 C 0.014 3.986 15 C -0.134 4.134 16 C -0.167 4.167 17 C 0.080 3.920 18 C -0.490 4.490 19 H 0.082 0.918 20 C 0.031 3.969 21 N -0.829 5.829 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.257 1.257 26 C -0.221 4.221 27 C -0.084 4.084 28 C -0.042 4.042 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.177 0.823 33 H 0.181 0.819 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.426 0.574 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.287 0.713 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.747 9.909 9.307 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.254 6.254 3 C 0.017 3.983 4 C -0.125 4.125 5 C -0.201 4.201 6 C 0.135 3.865 7 O -0.241 6.241 8 C -0.082 4.082 9 C -0.767 4.767 10 S 2.798 3.202 11 O -0.965 6.965 12 O -0.976 6.976 13 N -0.774 5.774 14 C -0.082 4.082 15 C -0.155 4.155 16 C -0.187 4.187 17 C 0.077 3.923 18 C -0.520 4.520 19 H 0.100 0.900 20 C -0.184 4.184 21 N -0.455 5.455 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.181 1.181 26 C -0.241 4.241 27 C -0.106 4.106 28 C -0.063 4.063 29 H 0.082 0.918 30 H 0.135 0.865 31 H 0.096 0.904 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.142 0.858 37 H 0.265 0.735 38 H 0.137 0.863 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.062 9.144 10.143 16.963 hybrid contribution -0.757 -0.262 -0.870 1.182 sum -10.819 8.882 9.273 16.791 Atomic orbital electron populations 1.23421 0.76091 1.05869 1.02554 1.86109 1.23837 1.26118 1.89298 1.18998 0.91800 0.85919 1.01594 1.21733 1.02025 0.90649 0.98075 1.21531 0.92185 1.00256 1.06088 1.18330 0.91948 0.84263 0.91988 1.86103 1.38133 1.12900 1.86981 1.23573 0.96753 0.84899 1.02962 1.29761 1.26653 0.96766 1.23500 1.01533 0.73778 0.72771 0.72100 1.93520 1.83086 1.64863 1.55003 1.93500 1.79374 1.38254 1.86429 1.52100 1.69853 1.36763 1.18663 1.16773 1.12365 0.91636 0.87425 1.21270 1.01350 0.94403 0.98475 1.20948 1.03801 0.99851 0.94140 1.18040 0.88574 0.92237 0.93490 1.19812 1.41887 0.95685 0.94591 0.89996 1.26798 0.91801 0.98138 1.01627 1.69911 1.33300 1.12022 1.30271 0.85218 0.79895 0.77088 0.77300 1.18448 1.19628 1.18139 1.20885 1.09883 0.95232 0.98141 1.20563 0.98045 0.99107 0.92850 1.20013 0.93502 0.96202 0.96534 0.91778 0.86534 0.90440 0.80562 0.80198 0.90583 0.90496 0.85813 0.73534 0.86272 0.87863 0.90284 0.87180 0.85284 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -10.21 10.50 -93.36 -0.98 -11.19 16 3 C 0.06 1.99 6.69 22.49 0.15 2.14 16 4 C -0.11 -2.51 9.03 22.35 0.20 -2.31 16 5 C -0.18 -4.19 9.03 22.35 0.20 -3.99 16 6 C 0.18 5.52 6.63 22.49 0.15 5.67 16 7 O -0.33 -8.81 9.30 -84.67 -0.79 -9.60 16 8 C 0.01 0.17 9.82 113.37 1.11 1.28 16 9 C -0.68 -24.75 5.78 22.36 0.13 -24.62 16 10 S 2.71 104.63 5.20 -56.49 -0.29 104.34 16 11 O -0.97 -38.38 17.33 -123.09 -2.13 -40.51 16 12 O -0.99 -43.87 14.00 -128.00 -1.79 -45.66 16 13 N -1.02 -37.39 5.73 -51.06 -0.29 -37.68 16 14 C 0.01 0.61 6.16 38.67 0.24 0.85 16 15 C -0.13 -6.70 9.14 22.15 0.20 -6.50 16 16 C -0.17 -9.13 8.60 22.48 0.19 -8.93 16 17 C 0.08 4.26 5.56 -21.27 -0.12 4.14 16 18 C -0.49 -25.95 9.04 23.37 0.21 -25.73 16 19 H 0.08 4.09 7.87 -2.91 -0.02 4.07 16 20 C 0.03 1.54 5.24 85.23 0.45 1.99 16 21 N -0.83 -44.18 10.82 21.82 0.24 -43.94 16 22 Si 0.98 38.07 29.58 68.60 2.03 40.10 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 26 C -0.22 -10.37 9.74 22.47 0.22 -10.15 16 27 C -0.08 -3.51 9.90 22.15 0.22 -3.29 16 28 C -0.04 -1.60 9.48 22.36 0.21 -1.38 16 29 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 30 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 0.96 7.66 -2.38 -0.02 0.94 16 32 H 0.18 2.59 6.29 -2.91 -0.02 2.57 16 33 H 0.18 2.47 6.32 -2.91 -0.02 2.45 16 34 H 0.08 0.88 7.68 -2.39 -0.02 0.86 16 35 H 0.08 0.85 7.65 -2.39 -0.02 0.83 16 36 H 0.12 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.43 12.82 8.95 -96.75 -0.87 11.96 16 38 H 0.12 6.03 5.60 -2.91 -0.02 6.01 16 39 H 0.10 5.98 6.18 -2.91 -0.02 5.96 16 40 H 0.29 13.98 8.30 -92.71 -0.77 13.22 16 41 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 42 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.14 5.45 7.33 -2.91 -0.02 5.43 16 Total: -1.00 -74.65 373.34 1.08 -73.57 By element: Atomic # 1 Polarization: 39.83 SS G_CDS: 0.21 Total: 40.04 kcal Atomic # 6 Polarization: -74.35 SS G_CDS: 4.88 Total: -69.46 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.06 Total: -81.63 kcal Atomic # 8 Polarization: -101.27 SS G_CDS: -5.69 Total: -106.96 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Atomic # 16 Polarization: 104.63 SS G_CDS: -0.29 Total: 104.34 kcal Total: -74.65 1.08 -73.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000029972274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.066 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds