Wall clock time and date at job start Tue Mar 31 2020 06:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48506 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47213 * 299.99788 * 3 2 1 6 6 H 1.48504 * 109.47184 * 59.99683 * 3 2 1 7 7 C 1.37885 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99428 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00138 * 269.99601 * 10 9 7 12 12 O 1.21277 * 120.00159 * 4.49320 * 11 10 9 13 13 C 1.50709 * 119.99697 * 184.48615 * 11 10 9 14 14 N 1.46500 * 109.46854 * 174.65472 * 13 11 10 15 15 N 1.39737 * 119.95607 * 269.72807 * 14 13 11 16 16 N 1.28367 * 122.94582 * 179.75243 * 15 14 13 17 17 C 1.35626 * 121.96956 * 0.49611 * 16 15 14 18 18 C 1.39736 * 121.33160 * 179.70177 * 17 16 15 19 19 C 1.37638 * 119.73915 * 180.08112 * 18 17 16 20 20 C 1.38879 * 120.80612 * 0.02562 * 19 18 17 21 21 C 1.37751 * 120.53981 * 359.97438 * 20 19 18 22 22 C 1.39373 * 119.56687 * 359.97438 * 21 20 19 23 23 C 1.35400 * 119.95630 * 89.99958 * 14 13 11 24 24 O 1.21735 * 121.31966 * 0.02562 * 23 14 13 25 25 C 1.39924 * 119.99613 * 90.00291 * 10 9 7 26 26 C 1.38874 * 120.06813 * 246.65461 * 25 10 9 27 27 C 1.38116 * 119.92847 * 180.31875 * 26 25 10 28 28 C 1.38279 * 120.07363 * 359.93696 * 27 26 25 29 29 C 1.38289 * 120.13890 * 0.04419 * 28 27 26 30 30 C 1.38108 * 120.06766 * 359.97438 * 29 28 27 31 31 H 0.97004 * 119.99868 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47483 * 59.99799 * 9 7 2 33 33 H 1.08999 * 109.47476 * 299.99379 * 9 7 2 34 34 H 1.08997 * 109.47262 * 294.65378 * 13 11 10 35 35 H 1.08996 * 109.47130 * 54.65549 * 13 11 10 36 36 H 1.07998 * 120.12664 * 0.06173 * 18 17 16 37 37 H 1.08000 * 119.59016 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.72447 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.21484 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.03625 * 0.25633 * 26 25 10 41 41 H 1.07997 * 119.96293 * 179.97438 * 27 26 25 42 42 H 1.07995 * 119.92986 * 180.02562 * 28 27 26 43 43 H 1.07994 * 119.96240 * 179.97438 * 29 28 27 44 44 H 1.08009 * 120.03132 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6407 -4.1250 -1.1666 12 8 2.3110 -3.6128 -2.2153 13 6 3.5402 -5.3342 -1.1685 14 7 3.7705 -5.7693 -2.5483 15 7 2.9136 -6.7024 -3.1380 16 7 3.0590 -7.1198 -4.3431 17 6 4.0713 -6.6876 -5.1356 18 6 4.2205 -7.1556 -6.4438 19 6 5.2610 -6.6961 -7.2187 20 6 6.1674 -5.7714 -6.7167 21 6 6.0415 -5.2952 -5.4303 22 6 4.9942 -5.7468 -4.6291 23 6 4.8166 -5.2709 -3.2487 24 8 5.5802 -4.4612 -2.7554 25 6 2.6574 -4.1445 1.2124 26 6 3.9902 -4.0053 1.5769 27 6 4.4372 -4.5371 2.7707 28 6 3.5590 -5.2063 3.6031 29 6 2.2311 -5.3462 3.2432 30 6 1.7780 -4.8171 2.0507 31 1 -0.4850 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8896 33 1 0.6239 -2.5568 0.8903 34 1 4.4928 -5.0792 -0.7042 35 1 3.0668 -6.1400 -0.6077 36 1 3.5223 -7.8753 -6.8450 37 1 5.3738 -7.0591 -8.2296 38 1 6.9772 -5.4223 -7.3402 39 1 6.7496 -4.5765 -5.0450 40 1 4.6767 -3.4828 0.9272 41 1 5.4736 -4.4296 3.0545 42 1 3.9109 -5.6208 4.5362 43 1 1.5478 -5.8697 3.8953 44 1 0.7409 -4.9270 1.7699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031712472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:30 Heat of formation + Delta-G solvation = 70.029875 kcal Electronic energy + Delta-G solvation = -31981.809450 eV Core-core repulsion = 27673.367116 eV Total energy + Delta-G solvation = -4308.442335 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48566 -40.02326 -38.80728 -38.06793 -37.79680 -35.04591 -34.38190 -32.73004 -31.83249 -31.22312 -30.76803 -29.51428 -28.99659 -26.85959 -25.60308 -24.53609 -22.98728 -22.56932 -22.46904 -22.08767 -19.79016 -19.55326 -18.88976 -17.57857 -17.20045 -16.58763 -16.29173 -16.03715 -15.69236 -15.48435 -15.33654 -15.15883 -14.97244 -14.34497 -14.29585 -14.26385 -13.89451 -13.78603 -13.24055 -13.18727 -12.98069 -12.75344 -12.64035 -12.50477 -12.35554 -12.22120 -11.92700 -11.53760 -11.25844 -11.06458 -10.86561 -10.79999 -10.68355 -10.52471 -10.24782 -10.19144 -9.76533 -9.57986 -9.45687 -8.79406 -8.74806 -8.53590 -8.46812 -7.76816 -6.08485 -4.12507 -0.24089 0.42756 1.48151 1.57806 1.65861 1.73166 2.39822 3.05258 3.29128 3.36379 3.40584 3.44131 3.49305 3.67702 3.77075 3.95978 4.26770 4.42853 4.42970 4.73924 4.74971 4.80204 4.97372 5.08124 5.13046 5.14917 5.22457 5.27043 5.31573 5.40358 5.49848 5.63041 5.65362 5.67425 5.76739 5.90416 5.97533 6.06196 6.21040 6.30978 6.54642 6.68193 6.72452 6.88502 7.13572 7.26989 7.37561 7.43489 7.87015 8.08496 8.14167 8.17924 8.69224 8.91558 9.51985 11.00042 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.003303 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.904455 B = 8474.714907 C =10241.047156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.554 5.554 11 C 0.504 3.496 12 O -0.514 6.514 13 C 0.102 3.898 14 N -0.435 5.435 15 N 0.100 4.900 16 N -0.208 5.208 17 C 0.064 3.936 18 C -0.073 4.073 19 C -0.087 4.087 20 C -0.107 4.107 21 C -0.050 4.050 22 C -0.145 4.145 23 C 0.533 3.467 24 O -0.495 6.495 25 C 0.154 3.846 26 C -0.128 4.128 27 C -0.108 4.108 28 C -0.132 4.132 29 C -0.108 4.108 30 C -0.121 4.121 31 H 0.263 0.737 32 H 0.047 0.953 33 H 0.039 0.961 34 H 0.129 0.871 35 H 0.125 0.875 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.987 -18.399 -5.328 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.077 0.923 9 C 0.132 3.868 10 N -0.283 5.283 11 C 0.289 3.711 12 O -0.389 6.389 13 C -0.024 4.024 14 N -0.259 5.259 15 N 0.114 4.886 16 N -0.099 5.099 17 C -0.045 4.045 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.127 4.127 21 C -0.070 4.070 22 C -0.155 4.155 23 C 0.323 3.677 24 O -0.366 6.366 25 C 0.062 3.938 26 C -0.147 4.147 27 C -0.127 4.127 28 C -0.150 4.150 29 C -0.127 4.127 30 C -0.141 4.141 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.141 0.859 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.130 -18.060 -5.325 21.381 hybrid contribution 1.251 1.905 -0.124 2.282 sum 11.380 -16.155 -5.449 20.498 Atomic orbital electron populations 1.69931 1.05961 1.27022 1.50383 1.24900 0.94895 0.99219 0.94920 0.86427 0.80113 0.83243 0.77617 1.19714 1.20830 1.20840 1.21393 0.93474 0.90357 1.51161 0.92268 1.19483 0.86908 0.81525 0.98837 1.45912 1.45654 1.34651 1.02049 1.20324 0.81578 0.84779 0.84430 1.90728 1.56608 1.60830 1.30693 1.21784 1.03266 0.98065 0.79274 1.50594 1.23861 1.36726 1.14756 1.80217 1.07642 0.96588 1.04196 1.73904 1.17460 1.20342 0.98232 1.19649 0.92413 0.96381 0.96065 1.21009 0.98329 0.99508 0.90707 1.21375 0.93383 0.95668 1.00176 1.21398 0.99534 0.96688 0.95081 1.21141 0.95435 0.97305 0.93083 1.20572 0.99502 1.00611 0.94803 1.18658 0.81084 0.81690 0.86287 1.90899 1.43916 1.31201 1.70552 1.17796 0.92587 0.95085 0.88304 1.21431 0.95676 1.00056 0.97581 1.20987 0.99674 0.98025 0.93995 1.21093 0.93738 1.00539 0.99664 1.20988 0.95760 0.99852 0.96099 1.21324 1.00121 0.97649 0.95025 0.92693 0.93501 0.94301 0.85360 0.85672 0.83360 0.84124 0.84224 0.83614 0.85724 0.85996 0.86270 0.85924 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 8 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 9 C 0.25 6.59 5.07 -5.19 -0.03 6.56 16 10 N -0.55 -12.01 2.51 -114.74 -0.29 -12.29 16 11 C 0.50 10.88 7.60 -10.98 -0.08 10.79 16 12 O -0.51 -13.42 16.04 5.56 0.09 -13.33 16 13 C 0.10 1.68 4.89 -5.19 -0.03 1.66 16 14 N -0.43 -7.45 3.02 -62.49 -0.19 -7.64 16 15 N 0.10 1.60 12.77 60.35 0.77 2.37 16 16 N -0.21 -3.03 11.61 32.27 0.37 -2.66 16 17 C 0.06 0.84 6.72 -84.51 -0.57 0.28 16 18 C -0.07 -0.66 10.02 -39.24 -0.39 -1.05 16 19 C -0.09 -0.60 10.00 -39.56 -0.40 -1.00 16 20 C -0.11 -0.83 10.02 -39.52 -0.40 -1.23 16 21 C -0.05 -0.57 9.67 -39.34 -0.38 -0.95 16 22 C -0.14 -2.09 5.90 -104.76 -0.62 -2.71 16 23 C 0.53 9.40 7.73 -12.39 -0.10 9.31 16 24 O -0.50 -9.76 16.33 5.16 0.08 -9.67 16 25 C 0.15 2.74 4.43 -83.69 -0.37 2.37 16 26 C -0.13 -2.04 8.44 -39.39 -0.33 -2.37 16 27 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 28 C -0.13 -1.55 10.04 -39.55 -0.40 -1.94 16 29 C -0.11 -1.35 10.04 -39.61 -0.40 -1.75 16 30 C -0.12 -1.86 9.65 -39.40 -0.38 -2.24 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 33 H 0.04 1.03 7.83 -51.93 -0.41 0.63 16 34 H 0.13 1.99 6.32 -51.93 -0.33 1.66 16 35 H 0.13 1.67 8.02 -51.93 -0.42 1.25 16 36 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 1.59 7.81 -52.49 -0.41 1.18 16 40 H 0.12 2.07 7.91 -52.48 -0.42 1.66 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 389.43 15.07 5.87 5.87 Total: -1.00 -36.77 389.43 -8.12 -44.90 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.87 Total: 0.90 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -5.68 Total: 0.14 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 1.40 Total: -46.26 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.77 -8.12 -44.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031712472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.926 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds