Wall clock time and date at job start Tue Mar 31 2020 06:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00310 * 2 1 4 4 H 1.48506 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47213 * 299.99788 * 3 2 1 6 6 H 1.48504 * 109.47184 * 59.99683 * 3 2 1 7 7 C 1.37885 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00091 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99428 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46706 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00138 * 269.99601 * 10 9 7 12 12 O 1.21277 * 120.00159 * 4.49320 * 11 10 9 13 13 C 1.50709 * 119.99697 * 184.48615 * 11 10 9 14 14 N 1.46500 * 109.46854 * 174.65472 * 13 11 10 15 15 N 1.39737 * 119.95607 * 269.72807 * 14 13 11 16 16 N 1.28367 * 122.94582 * 179.75243 * 15 14 13 17 17 C 1.35626 * 121.96956 * 0.49611 * 16 15 14 18 18 C 1.39736 * 121.33160 * 179.70177 * 17 16 15 19 19 C 1.37638 * 119.73915 * 180.08112 * 18 17 16 20 20 C 1.38879 * 120.80612 * 0.02562 * 19 18 17 21 21 C 1.37751 * 120.53981 * 359.97438 * 20 19 18 22 22 C 1.39373 * 119.56687 * 359.97438 * 21 20 19 23 23 C 1.35400 * 119.95630 * 89.99958 * 14 13 11 24 24 O 1.21735 * 121.31966 * 0.02562 * 23 14 13 25 25 C 1.39924 * 119.99613 * 90.00291 * 10 9 7 26 26 C 1.38874 * 120.06813 * 246.65461 * 25 10 9 27 27 C 1.38116 * 119.92847 * 180.31875 * 26 25 10 28 28 C 1.38279 * 120.07363 * 359.93696 * 27 26 25 29 29 C 1.38289 * 120.13890 * 0.04419 * 28 27 26 30 30 C 1.38108 * 120.06766 * 359.97438 * 29 28 27 31 31 H 0.97004 * 119.99868 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47483 * 59.99799 * 9 7 2 33 33 H 1.08999 * 109.47476 * 299.99379 * 9 7 2 34 34 H 1.08997 * 109.47262 * 294.65378 * 13 11 10 35 35 H 1.08996 * 109.47130 * 54.65549 * 13 11 10 36 36 H 1.07998 * 120.12664 * 0.06173 * 18 17 16 37 37 H 1.08000 * 119.59016 * 180.02562 * 19 18 17 38 38 H 1.07998 * 119.72447 * 180.02562 * 20 19 18 39 39 H 1.07998 * 120.21484 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.03625 * 0.25633 * 26 25 10 41 41 H 1.07997 * 119.96293 * 179.97438 * 27 26 25 42 42 H 1.07995 * 119.92986 * 180.02562 * 28 27 26 43 43 H 1.07994 * 119.96240 * 179.97438 * 29 28 27 44 44 H 1.08009 * 120.03132 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6407 -4.1250 -1.1666 12 8 2.3110 -3.6128 -2.2153 13 6 3.5402 -5.3342 -1.1685 14 7 3.7705 -5.7693 -2.5483 15 7 2.9136 -6.7024 -3.1380 16 7 3.0590 -7.1198 -4.3431 17 6 4.0713 -6.6876 -5.1356 18 6 4.2205 -7.1556 -6.4438 19 6 5.2610 -6.6961 -7.2187 20 6 6.1674 -5.7714 -6.7167 21 6 6.0415 -5.2952 -5.4303 22 6 4.9942 -5.7468 -4.6291 23 6 4.8166 -5.2709 -3.2487 24 8 5.5802 -4.4612 -2.7554 25 6 2.6574 -4.1445 1.2124 26 6 3.9902 -4.0053 1.5769 27 6 4.4372 -4.5371 2.7707 28 6 3.5590 -5.2063 3.6031 29 6 2.2311 -5.3462 3.2432 30 6 1.7780 -4.8171 2.0507 31 1 -0.4850 0.8401 -0.0004 32 1 0.6245 -2.5571 -0.8896 33 1 0.6239 -2.5568 0.8903 34 1 4.4928 -5.0792 -0.7042 35 1 3.0668 -6.1400 -0.6077 36 1 3.5223 -7.8753 -6.8450 37 1 5.3738 -7.0591 -8.2296 38 1 6.9772 -5.4223 -7.3402 39 1 6.7496 -4.5765 -5.0450 40 1 4.6767 -3.4828 0.9272 41 1 5.4736 -4.4296 3.0545 42 1 3.9109 -5.6208 4.5362 43 1 1.5478 -5.8697 3.8953 44 1 0.7409 -4.9270 1.7699 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031712472.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:29 Heat of formation + Delta-G solvation = 45.421295 kcal Electronic energy + Delta-G solvation = -31982.876558 eV Core-core repulsion = 27673.367116 eV Total energy + Delta-G solvation = -4309.509443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.62931 -41.47595 -39.91047 -39.45330 -38.87108 -36.69499 -35.66721 -34.86195 -32.73863 -32.17368 -31.89442 -31.07215 -30.31571 -28.65161 -26.66203 -25.80351 -24.76169 -23.82348 -23.43781 -23.31792 -20.94204 -20.82073 -20.02220 -19.01822 -18.77811 -18.47107 -17.49457 -17.29241 -16.93728 -16.85583 -16.72027 -16.39490 -16.05972 -15.94947 -15.50673 -15.37030 -15.17162 -15.02331 -14.68021 -14.53986 -14.31272 -14.04872 -13.80431 -13.67863 -13.60039 -13.44986 -13.23918 -13.10033 -12.98146 -12.74559 -12.52549 -12.20531 -12.18054 -11.87181 -11.79959 -11.76157 -11.46884 -11.00296 -10.73810 -10.39211 -10.23670 -9.85807 -9.68222 -9.31453 -8.32447 -6.46657 -1.23946 -0.47021 0.29724 0.45712 0.53751 0.67625 1.27437 1.29959 1.34974 1.39359 1.44542 2.02988 2.31380 2.38920 2.59607 2.82680 2.83396 2.97440 3.30602 3.38032 3.56643 3.85004 3.89741 4.04764 4.05926 4.10003 4.10529 4.18159 4.31506 4.43777 4.57911 4.60980 4.62747 4.69558 4.82920 4.87097 4.93437 5.00938 5.13433 5.16643 5.21020 5.32283 5.51719 5.60529 5.60917 5.61146 5.68456 5.92408 6.02961 6.16447 6.48495 6.59763 6.94464 7.03267 7.23965 8.75268 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.008825 B = 0.003303 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.904455 B = 8474.714907 C =10241.047156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.965 3.035 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.045 0.955 9 C 0.269 3.731 10 N -0.554 5.554 11 C 0.497 3.503 12 O -0.574 6.574 13 C 0.120 3.880 14 N -0.446 5.446 15 N 0.066 4.934 16 N -0.194 5.194 17 C 0.029 3.971 18 C -0.059 4.059 19 C -0.067 4.067 20 C -0.079 4.079 21 C -0.070 4.070 22 C -0.171 4.171 23 C 0.517 3.483 24 O -0.538 6.538 25 C 0.114 3.886 26 C -0.141 4.141 27 C -0.102 4.102 28 C -0.114 4.114 29 C -0.099 4.099 30 C -0.132 4.132 31 H 0.270 0.730 32 H 0.003 0.997 33 H 0.031 0.969 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.194 0.806 38 H 0.183 0.817 39 H 0.140 0.860 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.163 0.837 43 H 0.158 0.842 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.193 -20.290 -5.884 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.583 4.583 8 H 0.063 0.937 9 C 0.149 3.851 10 N -0.281 5.281 11 C 0.284 3.716 12 O -0.454 6.454 13 C -0.006 4.006 14 N -0.268 5.268 15 N 0.081 4.919 16 N -0.085 5.085 17 C -0.081 4.081 18 C -0.082 4.082 19 C -0.086 4.086 20 C -0.099 4.099 21 C -0.090 4.090 22 C -0.181 4.181 23 C 0.309 3.691 24 O -0.412 6.412 25 C 0.024 3.976 26 C -0.161 4.161 27 C -0.120 4.120 28 C -0.132 4.132 29 C -0.117 4.117 30 C -0.152 4.152 31 H 0.079 0.921 32 H 0.021 0.979 33 H 0.049 0.951 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.195 0.805 37 H 0.211 0.789 38 H 0.200 0.800 39 H 0.158 0.842 40 H 0.123 0.877 41 H 0.170 0.830 42 H 0.180 0.820 43 H 0.175 0.825 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.318 -20.012 -5.827 24.211 hybrid contribution 0.633 2.365 -0.128 2.451 sum 12.951 -17.647 -5.955 22.685 Atomic orbital electron populations 1.70031 1.07310 1.28280 1.50620 1.25790 0.95873 1.02816 0.94194 0.85405 0.78508 0.78747 0.78407 1.19797 1.20322 1.18685 1.21590 0.92924 0.91970 1.51780 0.93680 1.18878 0.87263 0.82831 0.96128 1.45709 1.44701 1.33612 1.04075 1.21225 0.81297 0.85614 0.83449 1.90667 1.59100 1.62913 1.32685 1.21635 1.02336 0.96401 0.80207 1.50603 1.24160 1.37242 1.14820 1.80216 1.08407 0.98032 1.05226 1.73724 1.17483 1.19333 0.97926 1.20004 0.92479 0.97838 0.97779 1.21539 0.99111 0.98862 0.88684 1.22012 0.91136 0.93655 1.01777 1.21966 0.99913 0.94743 0.93290 1.21355 0.94904 0.98043 0.94673 1.20659 1.01580 1.02235 0.93600 1.19356 0.80752 0.81260 0.87747 1.90838 1.45473 1.33207 1.71719 1.18063 0.94063 0.97805 0.87662 1.21385 0.94572 1.01149 0.98983 1.21330 1.01461 0.96821 0.92388 1.21597 0.92860 0.98310 1.00400 1.21384 0.96946 0.98570 0.94806 1.21406 0.99548 0.98216 0.96023 0.92141 0.97878 0.95096 0.84678 0.82721 0.80492 0.78894 0.79997 0.84187 0.87693 0.83040 0.81966 0.82452 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.49 13.29 21.45 0.28 -57.21 16 2 C 0.01 0.77 5.46 84.66 0.46 1.24 16 3 Si 0.97 47.47 29.54 68.60 2.03 49.50 16 4 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.54 -33.63 9.39 25.60 0.24 -33.38 16 8 H 0.04 2.84 7.81 -2.91 -0.02 2.82 16 9 C 0.27 15.46 5.07 85.63 0.43 15.90 16 10 N -0.55 -26.30 2.51 -635.30 -1.59 -27.89 16 11 C 0.50 23.71 7.60 87.66 0.67 24.38 16 12 O -0.57 -33.27 16.04 -3.02 -0.05 -33.32 16 13 C 0.12 4.35 4.89 85.64 0.42 4.77 16 14 N -0.45 -16.70 3.02 -469.45 -1.42 -18.12 16 15 N 0.07 2.29 12.77 37.02 0.47 2.76 16 16 N -0.19 -5.86 11.61 -51.82 -0.60 -6.46 16 17 C 0.03 0.76 6.72 39.64 0.27 1.02 16 18 C -0.06 -0.88 10.02 22.49 0.23 -0.66 16 19 C -0.07 -0.58 10.00 22.28 0.22 -0.36 16 20 C -0.08 -0.92 10.02 22.31 0.22 -0.70 16 21 C -0.07 -1.56 9.67 22.43 0.22 -1.34 16 22 C -0.17 -5.16 5.90 -19.96 -0.12 -5.27 16 23 C 0.52 19.93 7.73 86.47 0.67 20.59 16 24 O -0.54 -23.36 16.33 -4.46 -0.07 -23.44 16 25 C 0.11 4.30 4.43 38.15 0.17 4.47 16 26 C -0.14 -4.67 8.44 22.39 0.19 -4.48 16 27 C -0.10 -2.41 10.04 22.25 0.22 -2.19 16 28 C -0.11 -2.24 10.04 22.29 0.22 -2.02 16 29 C -0.10 -2.21 10.04 22.25 0.22 -1.99 16 30 C -0.13 -4.13 9.65 22.39 0.22 -3.91 16 31 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 32 H 0.00 0.20 7.49 -2.39 -0.02 0.19 16 33 H 0.03 1.79 7.83 -2.39 -0.02 1.77 16 34 H 0.14 4.65 6.32 -2.39 -0.02 4.63 16 35 H 0.16 4.48 8.02 -2.39 -0.02 4.47 16 36 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.19 -0.17 8.06 -2.91 -0.02 -0.20 16 38 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.14 3.19 7.81 -2.91 -0.02 3.16 16 40 H 0.10 3.80 7.91 -2.91 -0.02 3.78 16 41 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 42 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 44 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -91.57 389.43 5.27 -86.31 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.05 Total: 11.80 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 5.17 Total: 16.07 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -2.86 Total: -106.92 kcal Atomic # 8 Polarization: -56.64 SS G_CDS: -0.12 Total: -56.76 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -91.57 5.27 -86.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031712472.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.730 kcal (2) G-P(sol) polarization free energy of solvation -91.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds