Wall clock time and date at job start Tue Mar 31 2020 06:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31491 * 1 3 3 Si 1.86805 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00395 * 3 2 1 6 6 H 1.48499 * 109.46759 * 60.00138 * 3 2 1 7 7 C 1.38748 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00508 * 187.44251 * 7 2 1 9 9 N 1.37000 * 119.99827 * 7.43720 * 7 2 1 10 10 C 1.37952 * 120.87084 * 53.27832 * 9 7 2 11 11 C 1.40549 * 127.81186 * 0.02562 * 10 9 7 12 12 C 1.37405 * 120.74725 * 180.29143 * 11 10 9 13 13 C 1.38539 * 120.84825 * 359.95174 * 12 11 10 14 14 C 1.38065 * 119.47985 * 0.02907 * 13 12 11 15 15 C 1.38478 * 119.94638 * 359.97438 * 14 13 12 16 16 S 1.76892 * 132.20858 * 180.02562 * 15 14 13 17 17 C 1.35545 * 120.87522 * 233.07668 * 9 7 2 18 18 C 1.40174 * 127.01315 * 0.03698 * 17 9 7 19 19 N 1.36027 * 126.75954 * 189.33562 * 18 17 9 20 20 C 1.30670 * 108.84453 * 179.97438 * 19 18 17 21 21 C 1.47645 * 124.92935 * 180.02562 * 20 19 18 22 22 C 1.39685 * 120.15301 * 359.71027 * 21 20 19 23 23 C 1.37919 * 119.84014 * 179.76509 * 22 21 20 24 24 C 1.38380 * 120.16008 * 0.51043 * 23 22 21 25 25 C 1.38382 * 120.30748 * 359.73993 * 24 23 22 26 26 C 1.37929 * 120.16106 * 0.02562 * 25 24 23 27 27 O 1.34875 * 110.14759 * 0.02562 * 20 19 18 28 28 C 1.34930 * 108.31548 * 359.97438 * 27 20 19 29 29 O 1.21944 * 126.89746 * 179.97438 * 28 27 20 30 30 H 0.97007 * 119.99964 * 354.98469 * 1 2 3 31 31 H 1.08001 * 119.62416 * 0.26517 * 11 10 9 32 32 H 1.07995 * 119.57369 * 179.97438 * 12 11 10 33 33 H 1.08003 * 120.25592 * 180.02562 * 13 12 11 34 34 H 1.08004 * 120.02658 * 180.02562 * 14 13 12 35 35 H 1.08004 * 120.07621 * 0.02562 * 22 21 20 36 36 H 1.08006 * 119.92199 * 180.25396 * 23 22 21 37 37 H 1.07997 * 119.84772 * 179.76604 * 24 23 22 38 38 H 1.08006 * 119.92337 * 180.02562 * 25 24 23 39 39 H 1.07994 * 120.08273 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0087 -1.2016 -0.0005 8 1 3.0818 -1.2056 0.1206 9 7 1.3323 -2.3830 -0.1546 10 6 0.4787 -2.5760 -1.2210 11 6 0.1738 -1.6741 -2.2549 12 6 -0.7092 -2.0183 -3.2498 13 6 -1.3195 -3.2620 -3.2588 14 6 -1.0358 -4.1654 -2.2541 15 6 -0.1468 -3.8244 -1.2486 16 16 0.4428 -4.7073 0.1663 17 6 1.4874 -3.3943 0.7344 18 6 2.3038 -3.3985 1.8739 19 7 2.5936 -4.4673 2.6637 20 6 3.3861 -4.0777 3.6269 21 6 3.9213 -4.9540 4.6879 22 6 3.5830 -6.3090 4.7159 23 6 4.0904 -7.1227 5.7071 24 6 4.9244 -6.5976 6.6786 25 6 5.2595 -5.2551 6.6600 26 6 4.7633 -4.4306 5.6719 27 8 3.6444 -2.7590 3.5113 28 6 2.9886 -2.2918 2.4286 29 8 2.9860 -1.1456 2.0123 30 1 -0.4850 0.8369 0.0734 31 1 0.6386 -0.6993 -2.2673 32 1 -0.9301 -1.3104 -4.0348 33 1 -2.0119 -3.5227 -4.0457 34 1 -1.5063 -5.1376 -2.2527 35 1 2.9289 -6.7193 3.9606 36 1 3.8330 -8.1714 5.7276 37 1 5.3158 -7.2386 7.4546 38 1 5.9112 -4.8519 7.4210 39 1 5.0260 -3.3832 5.6583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032508921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:32 Heat of formation + Delta-G solvation = 53.103909 kcal Electronic energy + Delta-G solvation = -28965.772047 eV Core-core repulsion = 24931.222773 eV Total energy + Delta-G solvation = -4034.549274 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.067 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.45647 -41.70410 -39.82842 -38.74907 -37.89624 -35.61699 -34.92600 -32.82544 -31.93814 -31.83106 -31.33181 -29.67547 -27.78459 -25.99469 -24.30038 -23.84184 -23.54632 -23.18912 -22.08814 -21.35189 -20.08675 -19.01405 -18.78777 -17.94448 -17.47881 -17.32225 -17.17047 -16.76014 -16.47494 -16.23932 -15.91632 -15.71300 -15.41526 -15.16246 -15.00622 -14.55005 -14.37245 -14.26266 -14.15386 -13.80888 -13.65056 -13.24365 -13.04681 -12.94910 -12.75893 -12.53769 -12.32927 -12.18753 -12.08642 -11.94257 -11.74497 -11.70313 -11.25805 -10.97356 -10.50058 -10.22756 -9.84914 -9.61041 -9.24087 -8.85313 -7.84269 -6.61023 -0.86861 -0.08909 0.11414 0.22309 0.52378 0.68311 0.75731 1.23313 1.30170 1.38220 1.70642 1.82163 2.06291 2.21314 2.29494 2.58827 2.78556 3.00876 3.26805 3.61910 3.95190 4.08949 4.14180 4.18220 4.28603 4.37192 4.40001 4.43220 4.46054 4.59746 4.68920 4.92693 4.95145 5.02312 5.12486 5.17678 5.23233 5.28970 5.44730 5.48629 5.58910 5.61354 5.62972 5.74200 5.87273 6.08927 6.13657 6.36997 6.76467 6.89408 7.06585 8.13426 Molecular weight = 364.07amu Principal moments of inertia in cm(-1) A = 0.012186 B = 0.003498 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.134735 B = 8002.768682 C =10148.807306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.041 3.959 3 Si 0.989 3.011 4 H -0.273 1.273 5 H -0.241 1.241 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.103 0.897 9 N -0.274 5.274 10 C 0.090 3.910 11 C -0.072 4.072 12 C -0.100 4.100 13 C -0.097 4.097 14 C -0.064 4.064 15 C -0.186 4.186 16 S 0.136 5.864 17 C 0.181 3.819 18 C -0.247 4.247 19 N -0.422 5.422 20 C 0.176 3.824 21 C -0.019 4.019 22 C -0.097 4.097 23 C -0.114 4.114 24 C -0.106 4.106 25 C -0.115 4.115 26 C -0.116 4.116 27 O -0.309 6.309 28 C 0.433 3.567 29 O -0.502 6.502 30 H 0.291 0.709 31 H 0.114 0.886 32 H 0.162 0.838 33 H 0.183 0.817 34 H 0.166 0.834 35 H 0.126 0.874 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.155 0.845 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -10.797 -1.428 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.170 4.170 3 Si 0.811 3.189 4 H -0.197 1.197 5 H -0.165 1.165 6 H -0.205 1.205 7 C -0.437 4.437 8 H 0.120 0.880 9 N 0.060 4.940 10 C -0.015 4.015 11 C -0.093 4.093 12 C -0.120 4.120 13 C -0.118 4.118 14 C -0.086 4.086 15 C -0.303 4.303 16 S 0.396 5.604 17 C -0.064 4.064 18 C -0.371 4.371 19 N -0.150 5.150 20 C -0.034 4.034 21 C -0.021 4.021 22 C -0.117 4.117 23 C -0.132 4.132 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.136 4.136 27 O -0.214 6.214 28 C 0.287 3.713 29 O -0.398 6.398 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.180 0.820 33 H 0.200 0.800 34 H 0.184 0.816 35 H 0.144 0.856 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.173 0.827 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.823 -11.884 -1.497 12.116 hybrid contribution 1.140 3.516 0.206 3.702 sum -0.683 -8.368 -1.291 8.494 Atomic orbital electron populations 1.69977 1.07110 1.30956 1.39735 1.26218 0.96080 1.02796 0.91882 0.84954 0.78845 0.76266 0.78876 1.19705 1.16496 1.20513 1.20251 0.93536 0.81326 1.48606 0.87965 1.40324 1.28958 1.11810 1.12953 1.18778 0.96166 0.96034 0.90535 1.20796 0.98789 0.97512 0.92175 1.21308 0.94890 0.98322 0.97499 1.21613 0.99609 0.92141 0.98405 1.20582 0.94942 1.01856 0.91262 1.22656 1.07439 0.96643 1.03531 1.84150 1.40214 1.14730 1.21312 1.22689 0.99754 0.93565 0.90356 1.17769 1.20903 0.93009 1.05372 1.70231 1.12594 1.28704 1.03517 1.23174 1.01399 0.79689 0.99108 1.17641 1.00046 0.92097 0.92294 1.21256 0.99666 0.91034 0.99745 1.21419 0.97211 1.00859 0.93671 1.21721 0.96719 0.95229 0.98814 1.21374 0.99935 0.94098 0.97883 1.21342 0.97058 1.00626 0.94624 1.84789 1.64255 1.25707 1.46603 1.19891 0.80702 0.90369 0.80340 1.91055 1.67160 1.20893 1.60657 0.89835 0.86837 0.82003 0.79955 0.81621 0.85621 0.82312 0.81910 0.82723 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.35 11.44 21.63 0.25 -43.10 16 2 C 0.04 2.13 3.83 84.87 0.32 2.46 16 3 Si 0.99 43.29 29.14 68.60 2.00 45.29 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.24 -9.07 7.11 99.48 0.71 -8.37 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 7 C -0.31 -16.84 5.74 84.01 0.48 -16.35 16 8 H 0.10 6.13 6.11 -2.91 -0.02 6.11 16 9 N -0.27 -14.21 2.63 -335.43 -0.88 -15.09 16 10 C 0.09 3.97 5.87 39.09 0.23 4.20 16 11 C -0.07 -2.75 8.25 22.64 0.19 -2.56 16 12 C -0.10 -2.67 9.97 22.14 0.22 -2.45 16 13 C -0.10 -2.10 10.08 22.30 0.22 -1.87 16 14 C -0.06 -1.66 10.05 22.29 0.22 -1.44 16 15 C -0.19 -6.91 6.59 22.67 0.15 -6.76 16 16 S 0.14 5.45 23.14 -56.49 -1.31 4.14 16 17 C 0.18 9.36 7.19 84.59 0.61 9.96 16 18 C -0.25 -13.50 6.89 39.76 0.27 -13.23 16 19 N -0.42 -20.98 10.88 -296.24 -3.22 -24.21 16 20 C 0.18 8.36 7.83 87.35 0.68 9.05 16 21 C -0.02 -0.72 5.87 -20.09 -0.12 -0.84 16 22 C -0.10 -2.95 9.68 22.54 0.22 -2.74 16 23 C -0.11 -2.43 10.03 22.23 0.22 -2.20 16 24 C -0.11 -1.95 10.04 22.34 0.22 -1.73 16 25 C -0.12 -2.54 10.03 22.23 0.22 -2.31 16 26 C -0.12 -3.64 9.71 22.55 0.22 -3.42 16 27 O -0.31 -16.52 10.44 8.59 0.09 -16.43 16 28 C 0.43 25.23 8.30 68.62 0.57 25.80 16 29 O -0.50 -30.99 12.29 17.90 0.22 -30.77 16 30 H 0.29 13.77 8.32 -92.70 -0.77 13.00 16 31 H 0.11 4.72 6.39 -2.91 -0.02 4.71 16 32 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 33 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.17 3.05 8.06 -2.91 -0.02 3.03 16 35 H 0.13 3.95 7.80 -2.91 -0.02 3.92 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 38 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.12 3.79 7.86 -2.91 -0.02 3.77 16 Total: -1.00 -76.07 352.06 3.44 -72.63 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 1.13 Total: 13.95 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 5.17 Total: -6.42 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -3.86 Total: -82.40 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: 0.31 Total: -47.19 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.00 Total: 45.29 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.31 Total: 4.14 kcal Total: -76.07 3.44 -72.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032508921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.737 kcal (2) G-P(sol) polarization free energy of solvation -76.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds