Wall clock time and date at job start Tue Mar 31 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86797 * 119.99942 * 2 1 4 4 H 1.48512 * 109.46749 * 269.99850 * 3 2 1 5 5 H 1.48498 * 109.47314 * 29.99658 * 3 2 1 6 6 H 1.48494 * 109.46937 * 149.99990 * 3 2 1 7 7 C 1.37874 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99919 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00462 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47303 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00111 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99950 * 359.97438 * 11 10 9 13 13 C 1.50697 * 120.00126 * 179.97438 * 11 10 9 14 14 N 1.46897 * 109.47276 * 176.22890 * 13 11 10 15 15 C 1.46266 * 110.99930 * 64.85597 * 14 13 11 16 16 C 1.47543 * 114.37337 * 148.55056 * 15 14 13 17 17 C 1.54949 * 109.73270 * 62.22477 * 16 15 14 18 18 N 1.44672 * 109.52266 * 290.52230 * 17 16 15 19 19 C 1.34785 * 118.54279 * 269.09567 * 18 17 16 20 20 O 1.21555 * 119.99615 * 174.64642 * 19 18 17 21 21 C 1.47847 * 120.00276 * 354.65400 * 19 18 17 22 22 C 1.39594 * 120.13230 * 207.27405 * 21 19 18 23 23 C 1.37938 * 119.90451 * 179.97438 * 22 21 19 24 24 C 1.38344 * 120.17775 * 0.02562 * 23 22 21 25 25 C 1.38551 * 120.26519 * 359.97438 * 24 23 22 26 26 F 1.35099 * 119.95744 * 180.02562 * 25 24 23 27 27 C 1.38212 * 120.09159 * 359.72600 * 25 24 23 28 28 C 1.47770 * 122.90945 * 89.07900 * 18 17 16 29 29 C 1.44769 * 111.00289 * 301.36901 * 14 13 11 30 30 H 0.96995 * 119.99685 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47041 * 59.99696 * 9 7 2 32 32 H 1.09003 * 109.46879 * 300.00189 * 9 7 2 33 33 H 0.97001 * 120.00267 * 359.97438 * 10 9 7 34 34 H 1.08992 * 109.47183 * 296.23265 * 13 11 10 35 35 H 1.09007 * 109.46829 * 56.23349 * 13 11 10 36 36 H 1.08999 * 108.50732 * 269.82077 * 15 14 13 37 37 H 1.08999 * 108.49905 * 27.44748 * 15 14 13 38 38 H 1.09010 * 109.42577 * 182.30102 * 16 15 14 39 39 H 1.08993 * 109.43003 * 302.13976 * 16 15 14 40 40 H 1.09000 * 109.46151 * 50.53549 * 17 16 15 41 41 H 1.09003 * 109.45830 * 170.51209 * 17 16 15 42 42 H 1.08000 * 120.04607 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.91321 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.86926 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.09010 * 180.29369 * 27 25 24 46 46 H 1.09000 * 109.06763 * 78.64208 * 28 18 17 47 47 H 1.08999 * 109.06641 * 197.57499 * 28 18 17 48 48 H 1.08992 * 109.43003 * 337.92084 * 29 14 13 49 49 H 1.09000 * 109.43196 * 97.79081 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 1.7538 -4.8834 0.0015 12 8 0.5614 -5.1050 0.0006 13 6 2.7330 -6.0288 0.0022 14 7 2.0008 -7.2990 0.0927 15 6 1.1764 -7.5147 -1.0960 16 6 1.0038 -8.9319 -1.4683 17 6 0.2738 -9.6870 -0.3290 18 7 1.1496 -9.7963 0.8172 19 6 1.9413 -10.8821 0.9216 20 8 2.7565 -10.9557 1.8203 21 6 1.8184 -11.9834 -0.0571 22 6 2.1620 -13.2864 0.3075 23 6 2.0450 -14.3105 -0.6092 24 6 1.5887 -14.0496 -1.8889 25 6 1.2457 -12.7591 -2.2584 26 9 0.8002 -12.5114 -3.5096 27 6 1.3527 -11.7257 -1.3469 28 6 1.2149 -8.7700 1.8785 29 6 1.1901 -7.3463 1.2913 30 1 -0.4849 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 3.1567 -3.4355 0.0021 34 1 3.3150 -6.0098 -0.9192 35 1 3.4027 -5.9337 0.8570 36 1 0.1922 -7.0815 -0.9178 37 1 1.6361 -6.9925 -1.9351 38 1 0.4139 -8.9973 -2.3827 39 1 1.9811 -9.3846 -1.6352 40 1 -0.6255 -9.1388 -0.0480 41 1 -0.0012 -10.6843 -0.6723 42 1 2.5181 -13.4925 1.3060 43 1 2.3104 -15.3187 -0.3272 44 1 1.4994 -14.8551 -2.6027 45 1 1.0808 -10.7205 -1.6335 46 1 0.3629 -8.8943 2.5469 47 1 2.1348 -8.9044 2.4476 48 1 1.5863 -6.6443 2.0249 49 1 0.1639 -7.0729 1.0459 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032777311.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:57 Heat of formation + Delta-G solvation = -35.402075 kcal Electronic energy + Delta-G solvation = -32964.269197 eV Core-core repulsion = 28421.744770 eV Total energy + Delta-G solvation = -4542.524426 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.25538 -41.23275 -39.73929 -38.46926 -37.59731 -35.50154 -34.16695 -33.41344 -32.43455 -31.60682 -30.83948 -29.64801 -27.72515 -26.62851 -25.42276 -24.33049 -23.27352 -22.56825 -22.05186 -20.85678 -19.83236 -19.64873 -17.91790 -17.57269 -17.28814 -16.71731 -16.46046 -16.27779 -15.95400 -15.81944 -15.71725 -15.33014 -15.27903 -14.81070 -14.65488 -14.49464 -14.26928 -13.91033 -13.66918 -13.54643 -13.08194 -12.95781 -12.79713 -12.58184 -12.51878 -12.25409 -12.05470 -11.92988 -11.75454 -11.60685 -11.30774 -11.27454 -11.08330 -10.99020 -10.90860 -10.61221 -10.37666 -10.03146 -9.75872 -9.46546 -9.42121 -9.17323 -8.80279 -8.74524 -8.06457 -7.98077 -6.22923 -4.30244 0.37814 0.73016 2.49312 2.76875 3.19770 3.21102 3.26444 3.28146 3.28706 3.74753 3.83910 4.03444 4.12716 4.31462 4.33067 4.51156 4.54784 4.64491 4.75329 4.89960 4.97722 5.07189 5.09093 5.13311 5.21675 5.25563 5.39838 5.45016 5.49407 5.53853 5.57180 5.59804 5.62943 5.65762 5.76594 5.78618 5.88391 5.91942 6.08342 6.18415 6.35042 6.40706 6.95073 7.10719 7.18317 7.21559 7.33777 7.42676 7.58941 7.89939 7.96849 8.51974 8.69161 8.97855 9.36676 10.87116 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.001859 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.829605 B =15059.302081 C =15685.098634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.709 5.709 11 C 0.465 3.535 12 O -0.558 6.558 13 C 0.034 3.966 14 N -0.508 5.508 15 C 0.052 3.948 16 C -0.148 4.148 17 C 0.081 3.919 18 N -0.580 5.580 19 C 0.557 3.443 20 O -0.535 6.535 21 C -0.100 4.100 22 C -0.075 4.075 23 C -0.100 4.100 24 C -0.134 4.134 25 C 0.089 3.911 26 F -0.136 7.136 27 C -0.165 4.165 28 C 0.119 3.881 29 C 0.043 3.957 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.026 0.974 33 H 0.391 0.609 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.186 0.814 46 H 0.066 0.934 47 H 0.093 0.907 48 H 0.078 0.922 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 -27.925 -2.379 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.358 5.358 11 C 0.248 3.752 12 O -0.438 6.438 13 C -0.097 4.097 14 N -0.230 5.230 15 C -0.076 4.076 16 C -0.186 4.186 17 C -0.042 4.042 18 N -0.311 5.311 19 C 0.345 3.655 20 O -0.413 6.413 21 C -0.103 4.103 22 C -0.094 4.094 23 C -0.118 4.118 24 C -0.153 4.153 25 C 0.070 3.930 26 F -0.115 7.115 27 C -0.183 4.183 28 C -0.003 4.003 29 C -0.086 4.086 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.224 0.776 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.156 0.844 45 H 0.202 0.798 46 H 0.085 0.915 47 H 0.111 0.889 48 H 0.096 0.904 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.574 -28.285 -1.899 28.465 hybrid contribution 0.205 1.874 -0.464 1.941 sum 2.779 -26.411 -2.364 26.662 Atomic orbital electron populations 1.69973 1.06123 1.27361 1.48822 1.24962 0.94932 0.99521 0.94621 0.86405 0.79638 0.82568 0.78257 1.20436 1.20966 1.19713 1.21228 0.93277 0.90480 1.53334 0.91891 1.19084 0.88314 0.82119 0.97563 1.46586 1.11202 1.06447 1.71519 1.21722 0.90355 0.85356 0.77734 1.90625 1.16925 1.84746 1.51550 1.22464 0.96114 0.86410 1.04719 1.61258 1.29004 1.30030 1.02667 1.20970 0.98498 0.95353 0.92739 1.21636 1.01669 0.97169 0.98163 1.22476 0.93443 1.02061 0.86240 1.47405 1.40046 1.20084 1.23581 1.18222 0.80751 0.82093 0.84458 1.90768 1.35432 1.79851 1.35262 1.19813 1.01995 0.94658 0.93852 1.21326 0.96459 0.90963 1.00645 1.20999 0.98741 0.99805 0.92272 1.21389 1.00357 0.95598 0.97998 1.17615 1.00921 0.94183 0.80311 1.91531 1.86875 1.95030 1.38036 1.23046 0.99748 1.02519 0.92998 1.22085 1.03157 0.86553 0.88499 1.22397 0.98503 0.94986 0.92700 0.92421 0.95683 0.95652 0.77623 0.88199 0.88109 0.91622 0.91774 0.89496 0.90327 0.89892 0.88286 0.84262 0.84336 0.84435 0.79807 0.91544 0.88851 0.90364 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.49 9.28 -34.44 -0.32 -14.80 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.41 5.43 -5.19 -0.03 6.38 16 10 N -0.71 -14.04 5.55 -61.47 -0.34 -14.38 16 11 C 0.46 8.34 7.12 -10.99 -0.08 8.26 16 12 O -0.56 -11.78 12.55 5.56 0.07 -11.71 16 13 C 0.03 0.45 5.49 -4.98 -0.03 0.43 16 14 N -0.51 -6.55 4.37 -241.04 -1.05 -7.60 16 15 C 0.05 0.64 4.03 -6.80 -0.03 0.61 16 16 C -0.15 -1.39 4.31 -28.33 -0.12 -1.51 16 17 C 0.08 0.74 4.93 -3.99 -0.02 0.72 16 18 N -0.58 -6.45 2.53 -173.33 -0.44 -6.89 16 19 C 0.56 6.86 7.45 -12.32 -0.09 6.77 16 20 O -0.54 -8.24 15.92 5.32 0.08 -8.15 16 21 C -0.10 -1.00 5.56 -104.98 -0.58 -1.59 16 22 C -0.07 -0.64 9.59 -39.19 -0.38 -1.01 16 23 C -0.10 -0.64 10.03 -39.65 -0.40 -1.04 16 24 C -0.13 -0.92 10.02 -39.43 -0.40 -1.31 16 25 C 0.09 0.75 7.29 -39.48 -0.29 0.46 16 26 F -0.14 -1.25 17.26 2.25 0.04 -1.21 16 27 C -0.17 -1.46 7.01 -39.11 -0.27 -1.74 16 28 C 0.12 1.38 6.49 -2.81 -0.02 1.36 16 29 C 0.04 0.56 4.23 -4.43 -0.02 0.54 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.39 6.65 8.32 -40.82 -0.34 6.31 16 34 H 0.10 1.16 7.90 -51.93 -0.41 0.75 16 35 H 0.10 1.17 8.09 -51.92 -0.42 0.75 16 36 H 0.07 0.96 5.88 -51.93 -0.31 0.65 16 37 H 0.06 0.81 7.53 -51.93 -0.39 0.42 16 38 H 0.09 0.65 8.13 -51.92 -0.42 0.23 16 39 H 0.08 0.78 6.92 -51.93 -0.36 0.42 16 40 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.10 0.78 4.45 -51.93 -0.23 0.55 16 42 H 0.14 1.13 7.88 -52.49 -0.41 0.72 16 43 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 44 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.19 1.53 1.99 -53.00 -0.11 1.42 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.09 1.19 6.92 -51.93 -0.36 0.83 16 48 H 0.08 1.05 7.46 -51.93 -0.39 0.66 16 49 H 0.07 1.00 6.17 -51.93 -0.32 0.68 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -33.13 388.24 -9.77 -42.90 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.53 Total: 6.41 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -3.16 Total: 4.18 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.10 Total: -53.83 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.15 Total: -19.86 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.13 -9.77 -42.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032777311.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.497 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds