Wall clock time and date at job start Tue Mar 31 2020 06:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35947 * 116.99570 * 2 1 4 4 C 1.38041 * 120.00158 * 0.23641 * 3 2 1 5 5 C 1.40041 * 119.83484 * 180.21092 * 4 3 2 6 6 C 1.46854 * 120.08554 * 179.80928 * 5 4 3 7 7 C 1.35236 * 119.99837 * 316.64327 * 6 5 4 8 8 C 1.46183 * 119.99805 * 348.71421 * 7 6 5 9 9 O 1.21884 * 120.00224 * 353.49535 * 8 7 6 10 10 C 1.47020 * 120.00021 * 173.48950 * 8 7 6 11 11 C 1.35971 * 125.14312 * 179.97438 * 10 8 7 12 12 C 1.46205 * 106.07017 * 179.74272 * 11 10 8 13 13 C 1.39726 * 134.17986 * 180.26520 * 12 11 10 14 14 C 1.36634 * 119.70297 * 179.97438 * 13 12 11 15 15 C 1.38837 * 120.43750 * 0.03742 * 14 13 12 16 16 C 1.37825 * 120.75178 * 359.97438 * 15 14 13 17 17 C 1.38982 * 119.86228 * 359.97438 * 16 15 14 18 18 O 1.34749 * 133.23307 * 180.02562 * 17 16 15 19 19 C 1.40100 * 119.83407 * 359.53254 * 5 4 3 20 20 C 1.37609 * 119.99651 * 0.25309 * 19 5 4 21 21 C 1.39091 * 120.16630 * 359.97438 * 20 19 5 22 22 O 1.35591 * 119.91968 * 180.02562 * 21 20 19 23 23 C 1.34741 * 116.99758 * 354.32510 * 22 21 20 24 24 H 1.07997 * 120.00103 * 5.05337 * 23 22 21 25 25 C 1.38744 * 119.99672 * 185.06112 * 23 22 21 26 26 N 1.31492 * 119.99680 * 179.97438 * 25 23 22 27 27 Si 1.86803 * 120.00087 * 359.97438 * 25 23 22 28 28 H 1.48500 * 109.47040 * 90.00264 * 27 25 23 29 29 H 1.48498 * 109.46995 * 209.99981 * 27 25 23 30 30 H 1.48497 * 109.47205 * 330.00093 * 27 25 23 31 31 H 1.09003 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47351 * 299.99606 * 1 2 3 33 33 H 1.09002 * 109.47135 * 60.00267 * 1 2 3 34 34 H 1.08000 * 120.08065 * 359.97438 * 4 3 2 35 35 H 1.07998 * 120.00091 * 136.63683 * 6 5 4 36 36 H 1.07999 * 120.00102 * 168.72237 * 7 6 5 37 37 H 1.07996 * 126.96276 * 0.02562 * 11 10 8 38 38 H 1.07995 * 120.15200 * 0.02562 * 13 12 11 39 39 H 1.07998 * 119.77923 * 180.02562 * 14 13 12 40 40 H 1.08000 * 119.62023 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.06907 * 179.97438 * 16 15 14 42 42 H 1.08005 * 120.00612 * 180.23187 * 19 5 4 43 43 H 1.08000 * 119.91790 * 179.97438 * 20 19 5 44 44 H 0.97000 * 119.99656 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2943 2.3690 0.0049 5 6 1.9335 3.6150 0.0004 6 6 1.1390 4.8501 0.0014 7 6 0.0540 4.9567 -0.7987 8 6 -0.1895 3.9569 -1.8370 9 8 0.6433 3.0956 -2.0610 10 6 -1.4390 3.9902 -2.6110 11 6 -1.7723 3.1156 -3.5973 12 6 -3.0921 3.5265 -4.0737 13 6 -3.9681 3.0456 -5.0502 14 6 -5.1635 3.6744 -5.2562 15 6 -5.5120 4.7871 -4.5026 16 6 -4.6618 5.2772 -3.5348 17 6 -3.4408 4.6539 -3.3063 18 8 -2.4270 4.8950 -2.4520 19 6 3.3330 3.6803 0.0009 20 6 4.0758 2.5219 0.0005 21 6 3.4408 1.2844 0.0001 22 8 4.1776 0.1462 0.0002 23 6 5.5129 0.2819 -0.1181 24 1 5.9571 1.2663 -0.1252 25 6 6.3172 -0.8430 -0.2308 26 7 7.6203 -0.7105 -0.3468 27 14 5.5489 -2.5456 -0.2179 28 1 5.2166 -2.9493 -1.6078 29 1 6.5093 -3.5176 0.3636 30 1 4.3102 -2.5235 0.6008 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2157 2.3140 0.0084 35 1 1.4212 5.6731 0.6412 36 1 -0.6325 5.7805 -0.6707 37 1 -1.1837 2.2830 -3.9531 38 1 -3.7019 2.1802 -5.6390 39 1 -5.8417 3.3034 -6.0104 40 1 -6.4604 5.2737 -4.6762 41 1 -4.9439 6.1438 -2.9553 42 1 3.8289 4.6398 0.0012 43 1 5.1546 2.5738 0.0004 44 1 8.1827 -1.4969 -0.4252 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033472640.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:38 Heat of formation + Delta-G solvation = -0.374259 kcal Electronic energy + Delta-G solvation = -31143.656573 eV Core-core repulsion = 26767.575783 eV Total energy + Delta-G solvation = -4376.080789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.119 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.68742 -40.05249 -39.10743 -38.13114 -37.71926 -36.31701 -33.24430 -32.96820 -32.38138 -30.80439 -30.16490 -29.58502 -28.68992 -26.87341 -25.75292 -24.92984 -23.05048 -22.58163 -21.73695 -21.61550 -20.89328 -19.31130 -18.04406 -17.88906 -17.72369 -17.10134 -16.53763 -16.45538 -16.21248 -15.46093 -15.30977 -14.98810 -14.69383 -14.58552 -14.39453 -14.21405 -13.88782 -13.67061 -13.55520 -13.41012 -13.26211 -13.12079 -12.93205 -12.60081 -12.32762 -12.29364 -12.15900 -11.77340 -11.45704 -11.33168 -11.15149 -10.87220 -10.77660 -10.56003 -10.48263 -10.23887 -9.84912 -9.56376 -9.32954 -8.99879 -8.82303 -8.55251 -7.74332 -6.98370 -6.49002 -4.08441 0.10206 0.87897 1.01182 1.76366 2.17201 2.33978 2.44448 3.22498 3.26350 3.28726 3.35432 3.45383 3.78697 3.90548 4.23230 4.27204 4.42821 4.54504 4.60437 4.70392 4.75461 4.89225 4.98111 5.05071 5.06078 5.20722 5.30471 5.39254 5.46889 5.49037 5.50986 5.53457 5.68243 5.76204 5.79121 5.87709 6.02795 6.04624 6.05944 6.15651 6.23568 6.32339 6.39152 6.50466 6.77285 6.88535 6.99618 7.21083 7.45107 7.54836 7.60856 7.89313 8.11140 8.85543 9.49717 10.57244 Molecular weight = 364.12amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.002267 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.727535 B =12348.005904 C =13323.487192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.309 6.309 3 C 0.051 3.949 4 C -0.097 4.097 5 C -0.162 4.162 6 C 0.037 3.963 7 C -0.277 4.277 8 C 0.444 3.556 9 O -0.404 6.404 10 C -0.030 4.030 11 C -0.131 4.131 12 C -0.144 4.144 13 C -0.061 4.061 14 C -0.141 4.141 15 C -0.087 4.087 16 C -0.111 4.111 17 C 0.065 3.935 18 O -0.177 6.177 19 C -0.060 4.060 20 C -0.216 4.216 21 C 0.159 3.841 22 O -0.193 6.193 23 C -0.386 4.386 24 H 0.110 0.890 25 C 0.066 3.934 26 N -0.870 5.870 27 Si 0.904 3.096 28 H -0.272 1.272 29 H -0.282 1.282 30 H -0.254 1.254 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.115 0.885 43 H 0.141 0.859 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.423 11.638 -5.114 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.223 6.223 3 C 0.006 3.994 4 C -0.116 4.116 5 C -0.163 4.163 6 C 0.018 3.982 7 C -0.296 4.296 8 C 0.324 3.676 9 O -0.279 6.279 10 C -0.078 4.078 11 C -0.150 4.150 12 C -0.144 4.144 13 C -0.079 4.079 14 C -0.159 4.159 15 C -0.105 4.105 16 C -0.130 4.130 17 C 0.017 3.983 18 O -0.078 6.078 19 C -0.078 4.078 20 C -0.236 4.236 21 C 0.105 3.895 22 O -0.097 6.097 23 C -0.461 4.461 24 H 0.127 0.873 25 C -0.139 4.139 26 N -0.506 5.506 27 Si 0.729 3.271 28 H -0.197 1.197 29 H -0.207 1.207 30 H -0.178 1.178 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.186 0.814 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.133 0.867 43 H 0.159 0.841 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.692 10.820 -5.040 26.529 hybrid contribution -0.492 -0.437 -0.259 0.707 sum -24.184 10.383 -5.299 26.847 Atomic orbital electron populations 1.22877 0.80244 1.02851 1.00402 1.86155 1.19564 1.26559 1.90003 1.17965 0.89186 0.84481 1.07733 1.20577 0.97774 0.90721 1.02544 1.18178 0.92994 0.91468 1.13686 1.22547 0.89918 0.94562 0.91123 1.23052 1.02557 1.03157 1.00867 1.19220 0.81696 0.84216 0.82515 1.90978 1.41267 1.33205 1.62481 1.23056 0.91756 0.91941 1.01045 1.22940 0.94636 1.00941 0.96521 1.19989 0.95957 0.98125 1.00377 1.20417 0.92727 0.99235 0.95511 1.20806 0.97065 0.96913 1.01124 1.21005 0.98978 0.96100 0.94411 1.19989 0.90417 1.01644 1.00927 1.19833 0.90361 0.96475 0.91635 1.84048 1.24095 1.47946 1.51708 1.20785 0.91961 0.97478 0.97588 1.20878 1.01010 0.90568 1.11125 1.18589 0.87623 0.86986 0.96318 1.83573 1.20350 1.27572 1.78184 1.20892 0.77280 0.97089 1.50800 0.87291 1.24504 0.94538 0.99625 0.95258 1.69617 1.03153 1.31844 1.46009 0.86177 0.79822 0.81523 0.79556 1.19722 1.20737 1.17809 0.89080 0.93649 0.93454 0.86931 0.85270 0.84963 0.81415 0.85192 0.85156 0.84630 0.84787 0.86736 0.84109 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.31 -6.54 10.28 -34.19 -0.35 -6.89 16 3 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.10 -1.79 5.57 -38.98 -0.22 -2.01 16 5 C -0.16 -2.77 4.55 -105.04 -0.48 -3.25 16 6 C 0.04 0.48 9.81 -37.17 -0.36 0.12 16 7 C -0.28 -3.47 9.71 -37.46 -0.36 -3.84 16 8 C 0.44 6.46 6.10 -32.84 -0.20 6.26 16 9 O -0.40 -7.14 12.63 5.02 0.06 -7.08 16 10 C -0.03 -0.40 6.99 -36.84 -0.26 -0.66 16 11 C -0.13 -1.64 10.81 -37.20 -0.40 -2.04 16 12 C -0.14 -1.63 6.38 -105.19 -0.67 -2.31 16 13 C -0.06 -0.54 10.06 -39.61 -0.40 -0.94 16 14 C -0.14 -1.00 9.98 -39.94 -0.40 -1.39 16 15 C -0.09 -0.58 10.01 -39.51 -0.40 -0.98 16 16 C -0.11 -0.94 10.07 -39.46 -0.40 -1.34 16 17 C 0.07 0.74 7.41 -38.35 -0.28 0.46 16 18 O -0.18 -2.21 10.36 2.77 0.03 -2.19 16 19 C -0.06 -1.08 9.78 -39.11 -0.38 -1.46 16 20 C -0.22 -4.69 9.14 -39.49 -0.36 -5.05 16 21 C 0.16 3.84 6.67 -38.73 -0.26 3.58 16 22 O -0.19 -5.28 8.35 -13.82 -0.12 -5.40 16 23 C -0.39 -10.90 9.94 30.92 0.31 -10.59 16 24 H 0.11 3.09 5.41 -52.49 -0.28 2.81 16 25 C 0.07 1.84 5.49 -17.51 -0.10 1.75 16 26 N -0.87 -24.90 13.96 55.48 0.77 -24.12 16 27 Si 0.90 22.08 28.62 -169.99 -4.86 17.21 16 28 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.25 -6.35 7.11 56.52 0.40 -5.95 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 33 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 34 H 0.11 1.87 5.21 -52.49 -0.27 1.60 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.34 7.98 -52.49 -0.42 0.92 16 37 H 0.17 1.97 8.06 -52.49 -0.42 1.55 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.14 3.12 5.62 -52.49 -0.29 2.83 16 44 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 382.89 15.07 5.77 5.77 Total: -1.00 -32.87 382.89 -8.17 -41.04 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.58 Total: 3.02 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -4.89 Total: -21.37 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.77 Total: -24.12 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.37 Total: -21.56 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.86 Total: 17.21 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.87 -8.17 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033472640.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.667 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds