Wall clock time and date at job start Tue Mar 31 2020 05:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38321 * 119.87273 * 2 1 4 4 C 1.38013 * 120.12309 * 179.97438 * 3 2 1 5 5 C 1.39371 * 119.87234 * 359.97438 * 4 3 2 6 6 C 1.48352 * 120.11988 * 180.02562 * 5 4 3 7 7 C 1.35044 * 122.27957 * 179.97438 * 6 5 4 8 8 S 1.76216 * 108.22603 * 179.75338 * 7 6 5 9 9 C 1.76113 * 90.01385 * 0.29002 * 8 7 6 10 10 C 1.46538 * 125.33008 * 179.97438 * 9 8 7 11 11 C 1.34806 * 119.99440 * 352.09293 * 10 9 8 12 12 C 1.47043 * 120.00626 * 344.93326 * 11 10 9 13 13 C 1.39818 * 120.21447 * 312.01395 * 12 11 10 14 14 C 1.37832 * 119.89604 * 179.97438 * 13 12 11 15 15 C 1.38563 * 120.33606 * 0.02873 * 14 13 12 16 16 C 1.38106 * 120.43393 * 359.94661 * 15 14 13 17 17 C 1.38725 * 120.09689 * 0.05049 * 16 15 14 18 18 O 1.35580 * 120.16861 * 180.25070 * 17 16 15 19 19 C 1.34810 * 116.99781 * 352.25332 * 18 17 16 20 20 H 1.07995 * 119.99887 * 5.34816 * 19 18 17 21 21 C 1.38611 * 119.99442 * 185.34905 * 19 18 17 22 22 N 1.31575 * 120.00678 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99643 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47541 * 89.99511 * 23 21 19 25 25 H 1.48503 * 109.47245 * 209.99970 * 23 21 19 26 26 H 1.48503 * 109.46993 * 329.99446 * 23 21 19 27 27 N 1.30441 * 109.33856 * 359.70548 * 9 8 7 28 28 C 1.39367 * 119.75447 * 0.27703 * 5 4 3 29 29 C 1.38010 * 119.87246 * 359.44687 * 28 5 4 30 30 H 1.08991 * 109.47058 * 90.00116 * 1 2 3 31 31 H 1.09005 * 109.46617 * 209.99927 * 1 2 3 32 32 H 1.08997 * 109.47330 * 329.99540 * 1 2 3 33 33 H 1.08001 * 119.94523 * 359.95998 * 3 2 1 34 34 H 1.07999 * 120.06418 * 180.02562 * 4 3 2 35 35 H 1.08004 * 125.88469 * 359.97438 * 7 6 5 36 36 H 1.07991 * 120.00444 * 172.09437 * 10 9 8 37 37 H 1.08001 * 119.99510 * 164.93313 * 11 10 9 38 38 H 1.08002 * 120.05148 * 0.02562 * 13 12 11 39 39 H 1.08010 * 119.82586 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.78226 * 179.97438 * 15 14 13 41 41 H 1.08005 * 119.95485 * 180.02562 * 16 15 14 42 42 H 0.97000 * 120.00556 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.06529 * 179.71940 * 28 5 4 44 44 H 1.08005 * 119.93960 * 180.24903 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5761 1.2055 0.0005 5 6 4.2756 0.0000 0.0016 6 6 5.7591 0.0000 0.0028 7 6 6.4803 -1.1417 0.0043 8 16 8.1897 -0.7137 -0.0019 9 6 7.7624 0.9948 0.0028 10 6 8.7166 2.1070 0.0013 11 6 10.0337 1.8652 0.1567 12 6 10.4877 0.5575 0.6526 13 6 9.8933 -0.0113 1.7832 14 6 10.3237 -1.2377 2.2421 15 6 11.3438 -1.9106 1.5890 16 6 11.9403 -1.3618 0.4708 17 6 11.5211 -0.1285 -0.0066 18 8 12.1022 0.4093 -1.1072 19 6 13.1865 -0.2238 -1.5980 20 1 13.5031 -1.1633 -1.1698 21 6 13.8950 0.3313 -2.6521 22 7 13.5096 1.4763 -3.1734 23 14 15.3971 -0.5462 -3.3327 24 1 14.9818 -1.4663 -4.4217 25 1 16.3546 0.4545 -3.8684 26 1 16.0491 -1.3243 -2.2489 27 7 6.4636 1.1152 0.0020 28 6 3.5761 -1.2055 -0.0037 29 6 2.1961 -1.1995 0.0016 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6530 2.1330 -0.0007 34 1 4.1131 2.1425 0.0010 35 1 6.0787 -2.1442 0.0053 36 1 8.3648 3.1202 -0.1242 37 1 10.7554 2.6320 -0.0832 38 1 9.0976 0.5090 2.2955 39 1 9.8635 -1.6762 3.1153 40 1 11.6743 -2.8709 1.9566 41 1 12.7345 -1.8932 -0.0325 42 1 14.0052 1.8646 -3.9114 43 1 4.1131 -2.1426 -0.0075 44 1 1.6530 -2.1331 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033527923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:22 Heat of formation + Delta-G solvation = 82.496704 kcal Electronic energy + Delta-G solvation = -27954.400346 eV Core-core repulsion = 24122.384644 eV Total energy + Delta-G solvation = -3832.015701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.89351 -39.36879 -38.43913 -36.78152 -34.45245 -32.97126 -32.45615 -31.11917 -30.01578 -29.33040 -28.48419 -26.88156 -25.51938 -24.82423 -22.68687 -22.37722 -21.55005 -21.49102 -19.64258 -19.08976 -18.15791 -17.54088 -16.75355 -16.20619 -15.44106 -15.22027 -14.91467 -14.80760 -14.74614 -14.31528 -14.28997 -13.92793 -13.86324 -13.76817 -13.51452 -13.46077 -12.97504 -12.82947 -12.56580 -12.39707 -12.17200 -11.98578 -11.90671 -11.80350 -11.40126 -11.13070 -11.03839 -10.92277 -10.75880 -10.56727 -10.54811 -10.10808 -9.55760 -9.29845 -9.22924 -8.99907 -8.98752 -8.65554 -8.23274 -7.34580 -7.17811 -6.61560 -4.19914 0.51764 1.09569 1.36914 1.77314 1.90046 2.05626 2.40507 2.66595 3.04270 3.05218 3.09935 3.36317 3.82877 3.97421 4.23452 4.38356 4.70010 4.76161 4.90790 4.93525 5.03469 5.09757 5.15008 5.30507 5.33859 5.37043 5.46779 5.48903 5.56254 5.62320 5.64834 5.73640 5.86909 5.94077 6.04051 6.05456 6.14515 6.16684 6.45887 6.49464 6.51673 6.55592 6.61906 6.69992 6.78211 6.92919 6.97096 7.08752 7.18757 7.23445 7.59497 7.81790 8.05817 8.83152 9.48178 10.54890 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002226 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.957510 B =12574.482660 C =13040.560587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.123 4.123 4 C -0.087 4.087 5 C -0.015 4.015 6 C 0.095 3.905 7 C -0.299 4.299 8 S 0.175 5.825 9 C 0.114 3.886 10 C -0.137 4.137 11 C -0.010 4.010 12 C -0.185 4.185 13 C -0.037 4.037 14 C -0.211 4.211 15 C -0.057 4.057 16 C -0.233 4.233 17 C 0.178 3.822 18 O -0.160 6.160 19 C -0.395 4.395 20 H 0.095 0.905 21 C 0.043 3.957 22 N -0.853 5.853 23 Si 0.942 3.058 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.266 1.266 27 N -0.475 5.475 28 C -0.105 4.105 29 C -0.122 4.122 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.132 0.868 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.273 0.727 43 H 0.123 0.877 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.108 -4.147 7.243 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.106 4.106 5 C -0.017 4.017 6 C -0.038 4.038 7 C -0.438 4.438 8 S 0.441 5.559 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.034 4.034 12 C -0.190 4.190 13 C -0.059 4.059 14 C -0.230 4.230 15 C -0.075 4.075 16 C -0.252 4.252 17 C 0.122 3.878 18 O -0.061 6.061 19 C -0.470 4.470 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.486 5.486 23 Si 0.766 3.234 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.191 1.191 27 N -0.189 5.189 28 C -0.124 4.124 29 C -0.140 4.140 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.148 0.852 42 H 0.083 0.917 43 H 0.141 0.859 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.437 -3.907 6.821 17.323 hybrid contribution -0.085 -0.617 -0.418 0.750 sum -15.522 -4.524 6.403 17.390 Atomic orbital electron populations 1.20781 0.91356 1.02611 1.02196 1.19966 0.95972 0.93264 1.00010 1.20988 0.94018 0.97474 1.01627 1.21298 0.93633 0.98148 0.97516 1.18218 0.89266 0.93577 1.00687 1.18490 0.93537 0.87183 1.04575 1.27685 1.00714 1.02863 1.12563 1.86405 1.00884 1.03212 1.65400 1.25988 0.91960 0.95947 1.02000 1.20994 0.90507 0.95443 1.08905 1.22175 0.94501 0.95653 0.91081 1.18104 1.03022 0.97272 1.00619 1.20709 0.96496 0.95028 0.93712 1.20466 1.02284 0.97040 1.03226 1.20891 0.94437 0.98126 0.94049 1.21153 1.05697 0.97632 1.00738 1.19360 0.90738 0.91212 0.86495 1.83911 1.39286 1.48982 1.33967 1.21375 1.03118 1.05988 1.16564 0.88779 1.25316 0.98911 0.96062 0.95994 1.70031 1.38942 1.16437 1.23180 0.85696 0.79589 0.78749 0.79369 1.19740 1.20106 1.19052 1.66597 1.04393 1.30151 1.17740 1.21117 0.94065 0.97171 1.00041 1.20872 0.93721 0.97492 1.01894 0.91283 0.91679 0.91633 0.86027 0.84966 0.81699 0.84190 0.84400 0.86808 0.87140 0.87154 0.85180 0.91709 0.85934 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.09 -0.94 5.88 -104.55 -0.62 -1.55 16 3 C -0.12 -1.37 9.68 -39.63 -0.38 -1.76 16 4 C -0.09 -1.17 9.62 -39.24 -0.38 -1.55 16 5 C -0.01 -0.22 5.88 -104.89 -0.62 -0.83 16 6 C 0.09 1.56 6.61 -84.81 -0.56 1.00 16 7 C -0.30 -4.63 10.59 29.60 0.31 -4.32 16 8 S 0.17 2.99 17.25 -107.50 -1.85 1.14 16 9 C 0.11 2.04 6.60 -14.80 -0.10 1.95 16 10 C -0.14 -2.33 10.06 -37.45 -0.38 -2.70 16 11 C -0.01 -0.19 9.32 -37.23 -0.35 -0.53 16 12 C -0.18 -3.56 3.64 -104.90 -0.38 -3.94 16 13 C -0.04 -0.63 5.96 -39.14 -0.23 -0.86 16 14 C -0.21 -3.32 9.57 -39.61 -0.38 -3.70 16 15 C -0.06 -0.93 10.03 -39.51 -0.40 -1.33 16 16 C -0.23 -4.58 9.15 -39.45 -0.36 -4.94 16 17 C 0.18 3.91 6.66 -38.56 -0.26 3.65 16 18 O -0.16 -4.16 9.21 0.63 0.01 -4.16 16 19 C -0.39 -10.21 9.48 30.87 0.29 -9.92 16 20 H 0.09 2.24 5.22 -52.49 -0.27 1.97 16 21 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 22 N -0.85 -23.49 13.67 55.48 0.76 -22.73 16 23 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 N -0.48 -8.45 9.90 -8.22 -0.08 -8.53 16 28 C -0.10 -1.27 9.47 -39.24 -0.37 -1.65 16 29 C -0.12 -1.28 9.68 -39.63 -0.38 -1.66 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.83 7.67 -52.49 -0.40 1.42 16 35 H 0.17 2.09 6.81 -52.48 -0.36 1.73 16 36 H 0.14 2.09 8.06 -52.49 -0.42 1.66 16 37 H 0.14 2.50 8.06 -52.49 -0.42 2.07 16 38 H 0.11 1.79 7.62 -52.49 -0.40 1.39 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.13 2.56 5.67 -52.48 -0.30 2.26 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.12 1.29 6.59 -52.49 -0.35 0.95 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -29.30 384.85 -10.67 -39.97 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.01 Total: 8.25 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: -5.27 Total: -34.08 kcal Atomic # 7 Polarization: -31.94 SS G_CDS: 0.68 Total: -31.27 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.01 Total: -4.16 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -1.85 Total: 1.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.30 -10.67 -39.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033527923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.468 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds