Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38321 * 119.87273 * 2 1 4 4 C 1.38013 * 120.12309 * 179.97438 * 3 2 1 5 5 C 1.39371 * 119.87234 * 359.97438 * 4 3 2 6 6 C 1.48352 * 120.11988 * 180.02562 * 5 4 3 7 7 C 1.35044 * 122.27957 * 179.97438 * 6 5 4 8 8 S 1.76216 * 108.22603 * 179.75338 * 7 6 5 9 9 C 1.76113 * 90.01385 * 0.29002 * 8 7 6 10 10 C 1.46538 * 125.33008 * 179.97438 * 9 8 7 11 11 C 1.34806 * 119.99440 * 352.09293 * 10 9 8 12 12 C 1.47043 * 120.00626 * 344.93326 * 11 10 9 13 13 C 1.39818 * 120.21447 * 312.01395 * 12 11 10 14 14 C 1.37832 * 119.89604 * 179.97438 * 13 12 11 15 15 C 1.38563 * 120.33606 * 0.02873 * 14 13 12 16 16 C 1.38106 * 120.43393 * 359.94661 * 15 14 13 17 17 C 1.38725 * 120.09689 * 0.05049 * 16 15 14 18 18 O 1.35580 * 120.16861 * 180.25070 * 17 16 15 19 19 C 1.34810 * 116.99781 * 352.25332 * 18 17 16 20 20 H 1.07995 * 119.99887 * 5.34816 * 19 18 17 21 21 C 1.38611 * 119.99442 * 185.34905 * 19 18 17 22 22 N 1.31575 * 120.00678 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99643 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47541 * 89.99511 * 23 21 19 25 25 H 1.48503 * 109.47245 * 209.99970 * 23 21 19 26 26 H 1.48503 * 109.46993 * 329.99446 * 23 21 19 27 27 N 1.30441 * 109.33856 * 359.70548 * 9 8 7 28 28 C 1.39367 * 119.75447 * 0.27703 * 5 4 3 29 29 C 1.38010 * 119.87246 * 359.44687 * 28 5 4 30 30 H 1.08991 * 109.47058 * 90.00116 * 1 2 3 31 31 H 1.09005 * 109.46617 * 209.99927 * 1 2 3 32 32 H 1.08997 * 109.47330 * 329.99540 * 1 2 3 33 33 H 1.08001 * 119.94523 * 359.95998 * 3 2 1 34 34 H 1.07999 * 120.06418 * 180.02562 * 4 3 2 35 35 H 1.08004 * 125.88469 * 359.97438 * 7 6 5 36 36 H 1.07991 * 120.00444 * 172.09437 * 10 9 8 37 37 H 1.08001 * 119.99510 * 164.93313 * 11 10 9 38 38 H 1.08002 * 120.05148 * 0.02562 * 13 12 11 39 39 H 1.08010 * 119.82586 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.78226 * 179.97438 * 15 14 13 41 41 H 1.08005 * 119.95485 * 180.02562 * 16 15 14 42 42 H 0.97000 * 120.00556 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.06529 * 179.71940 * 28 5 4 44 44 H 1.08005 * 119.93960 * 180.24903 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5761 1.2055 0.0005 5 6 4.2756 0.0000 0.0016 6 6 5.7591 0.0000 0.0028 7 6 6.4803 -1.1417 0.0043 8 16 8.1897 -0.7137 -0.0019 9 6 7.7624 0.9948 0.0028 10 6 8.7166 2.1070 0.0013 11 6 10.0337 1.8652 0.1567 12 6 10.4877 0.5575 0.6526 13 6 9.8933 -0.0113 1.7832 14 6 10.3237 -1.2377 2.2421 15 6 11.3438 -1.9106 1.5890 16 6 11.9403 -1.3618 0.4708 17 6 11.5211 -0.1285 -0.0066 18 8 12.1022 0.4093 -1.1072 19 6 13.1865 -0.2238 -1.5980 20 1 13.5031 -1.1633 -1.1698 21 6 13.8950 0.3313 -2.6521 22 7 13.5096 1.4763 -3.1734 23 14 15.3971 -0.5462 -3.3327 24 1 14.9818 -1.4663 -4.4217 25 1 16.3546 0.4545 -3.8684 26 1 16.0491 -1.3243 -2.2489 27 7 6.4636 1.1152 0.0020 28 6 3.5761 -1.2055 -0.0037 29 6 2.1961 -1.1995 0.0016 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 1.6530 2.1330 -0.0007 34 1 4.1131 2.1425 0.0010 35 1 6.0787 -2.1442 0.0053 36 1 8.3648 3.1202 -0.1242 37 1 10.7554 2.6320 -0.0832 38 1 9.0976 0.5090 2.2955 39 1 9.8635 -1.6762 3.1153 40 1 11.6743 -2.8709 1.9566 41 1 12.7345 -1.8932 -0.0325 42 1 14.0052 1.8646 -3.9114 43 1 4.1131 -2.1426 -0.0075 44 1 1.6530 -2.1331 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033527923.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = 69.332667 kcal Electronic energy + Delta-G solvation = -27954.971181 eV Core-core repulsion = 24122.384644 eV Total energy + Delta-G solvation = -3832.586537 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.103 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01630 -40.91464 -39.52024 -38.37377 -35.80148 -34.30844 -33.91150 -32.02482 -31.26577 -30.76867 -29.85457 -27.79111 -27.34038 -26.08520 -23.94337 -23.32532 -23.07942 -22.59983 -20.89470 -20.41591 -19.85340 -18.93784 -18.22395 -17.31212 -16.82228 -16.42777 -16.34904 -16.06496 -15.83651 -15.73068 -15.60500 -15.46290 -15.19050 -14.67722 -14.55778 -14.51693 -14.37335 -14.25411 -13.85716 -13.56459 -13.40435 -13.22377 -12.99467 -12.98075 -12.73731 -12.43923 -12.35676 -12.18707 -12.11259 -11.93235 -11.77388 -11.42191 -11.18756 -10.85889 -10.65361 -10.44301 -10.01598 -9.88319 -9.40584 -8.87331 -8.52024 -8.46915 -6.13862 -0.79978 0.02337 0.43036 0.48136 0.54177 0.62467 1.04548 1.35300 1.36694 1.45446 1.52879 2.12039 2.16511 2.82827 2.96666 3.00249 3.15575 3.42257 3.81937 3.88216 3.93771 4.06199 4.10063 4.11988 4.25351 4.28202 4.31401 4.50728 4.54306 4.56925 4.59991 4.73695 4.82883 4.87290 4.90001 4.99538 5.02338 5.12449 5.16506 5.17676 5.27911 5.29085 5.38565 5.52299 5.61032 5.66676 5.68248 5.69790 5.73610 6.00871 6.06610 6.16047 6.73860 6.97673 7.75336 8.74398 Molecular weight = 363.10amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002226 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.957510 B =12574.482660 C =13040.560587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.105 4.105 5 C -0.047 4.047 6 C 0.082 3.918 7 C -0.285 4.285 8 S 0.156 5.844 9 C 0.093 3.907 10 C -0.119 4.119 11 C -0.035 4.035 12 C -0.181 4.181 13 C -0.038 4.038 14 C -0.187 4.187 15 C -0.050 4.050 16 C -0.246 4.246 17 C 0.148 3.852 18 O -0.212 6.212 19 C -0.411 4.411 20 H 0.104 0.896 21 C -0.017 4.017 22 N -0.912 5.912 23 Si 1.013 2.987 24 H -0.266 1.266 25 H -0.274 1.274 26 H -0.251 1.251 27 N -0.482 5.482 28 C -0.108 4.108 29 C -0.123 4.123 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.195 0.805 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.123 0.877 42 H 0.272 0.728 43 H 0.138 0.862 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.017 -6.883 9.191 22.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.124 4.124 5 C -0.049 4.049 6 C -0.050 4.050 7 C -0.424 4.424 8 S 0.420 5.580 9 C -0.181 4.181 10 C -0.140 4.140 11 C -0.059 4.059 12 C -0.186 4.186 13 C -0.060 4.060 14 C -0.206 4.206 15 C -0.068 4.068 16 C -0.265 4.265 17 C 0.095 3.905 18 O -0.117 6.117 19 C -0.487 4.487 20 H 0.122 0.878 21 C -0.216 4.216 22 N -0.550 5.550 23 Si 0.833 3.167 24 H -0.191 1.191 25 H -0.199 1.199 26 H -0.175 1.175 27 N -0.196 5.196 28 C -0.127 4.127 29 C -0.140 4.140 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.212 0.788 36 H 0.175 0.825 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.141 0.859 42 H 0.081 0.919 43 H 0.155 0.845 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.380 -6.662 8.828 21.451 hybrid contribution 0.342 0.164 -0.746 0.837 sum -18.037 -6.498 8.082 20.806 Atomic orbital electron populations 1.20856 0.88856 1.03916 1.03220 1.20408 0.97818 0.92734 0.97843 1.21239 0.93146 0.99048 1.01166 1.21319 0.94833 0.97465 0.98753 1.18337 0.88230 0.94954 1.03426 1.18911 0.94809 0.86984 1.04315 1.27927 0.99200 1.04011 1.11237 1.86331 1.02576 1.03149 1.65900 1.26064 0.92180 0.96345 1.03487 1.21165 0.89952 0.96271 1.06653 1.22132 0.94911 0.95687 0.93169 1.18359 1.02129 0.97288 1.00810 1.20929 0.96587 0.95707 0.92826 1.20966 1.00629 0.95798 1.03174 1.21273 0.93735 0.99362 0.92452 1.21288 1.06108 0.97110 1.02026 1.19863 0.91600 0.92466 0.86578 1.83894 1.40603 1.50661 1.36524 1.21808 1.03634 1.06426 1.16879 0.87834 1.26479 1.02000 0.96840 0.96286 1.70176 1.41180 1.18844 1.24760 0.84658 0.75627 0.77588 0.78867 1.19115 1.19877 1.17493 1.66609 1.04395 1.31309 1.17335 1.21344 0.94995 0.96807 0.99508 1.21258 0.93195 0.98905 1.00663 0.90234 0.90154 0.90668 0.84126 0.86460 0.78754 0.82528 0.85331 0.85446 0.83258 0.83351 0.85888 0.91875 0.84467 0.83091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.09 -1.52 5.88 -19.82 -0.12 -1.64 16 3 C -0.13 -2.62 9.68 22.24 0.22 -2.41 16 4 C -0.10 -2.77 9.62 22.49 0.22 -2.56 16 5 C -0.05 -1.31 5.88 -20.04 -0.12 -1.42 16 6 C 0.08 2.63 6.61 41.09 0.27 2.90 16 7 C -0.29 -8.36 10.59 67.08 0.71 -7.65 16 8 S 0.16 5.23 17.25 -56.49 -0.97 4.25 16 9 C 0.09 3.33 6.60 87.07 0.57 3.90 16 10 C -0.12 -4.18 10.06 23.65 0.24 -3.94 16 11 C -0.04 -1.35 9.32 23.79 0.22 -1.13 16 12 C -0.18 -7.13 3.64 -20.04 -0.07 -7.21 16 13 C -0.04 -1.25 5.96 22.56 0.13 -1.11 16 14 C -0.19 -5.27 9.57 22.25 0.21 -5.06 16 15 C -0.05 -1.52 10.03 22.32 0.22 -1.30 16 16 C -0.25 -9.71 9.15 22.35 0.20 -9.50 16 17 C 0.15 6.72 6.66 22.93 0.15 6.87 16 18 O -0.21 -11.79 9.21 -20.66 -0.19 -11.98 16 19 C -0.41 -22.52 9.48 67.91 0.64 -21.87 16 20 H 0.10 5.17 5.22 -2.91 -0.02 5.15 16 21 C -0.02 -0.94 5.49 84.82 0.47 -0.48 16 22 N -0.91 -53.76 13.67 21.61 0.30 -53.46 16 23 Si 1.01 41.22 29.55 68.60 2.03 43.25 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 27 N -0.48 -17.19 9.90 -179.93 -1.78 -18.97 16 28 C -0.11 -2.35 9.47 22.49 0.21 -2.13 16 29 C -0.12 -2.15 9.68 22.24 0.22 -1.93 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.63 8.08 -2.38 -0.02 0.61 16 32 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.12 3.34 7.67 -2.91 -0.02 3.31 16 35 H 0.20 4.35 6.81 -2.91 -0.02 4.33 16 36 H 0.16 4.81 8.06 -2.92 -0.02 4.78 16 37 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 38 H 0.13 3.79 7.62 -2.91 -0.02 3.77 16 39 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 40 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.12 4.94 5.67 -2.91 -0.02 4.92 16 42 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 43 H 0.14 2.46 6.59 -2.91 -0.02 2.44 16 44 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -69.14 384.85 5.73 -63.41 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 1.04 Total: 31.62 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 5.32 Total: -58.12 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.49 Total: -72.43 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.19 Total: -11.98 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -0.97 Total: 4.25 kcal Total: -69.14 5.73 -63.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033527923.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.743 kcal (2) G-P(sol) polarization free energy of solvation -69.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds