Wall clock time and date at job start Tue Mar 31 2020 06:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48492 * 109.47576 * 274.45088 * 3 2 1 5 5 H 1.48503 * 109.46707 * 34.45084 * 3 2 1 6 6 H 1.48495 * 109.47395 * 154.44717 * 3 2 1 7 7 C 1.38973 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00294 * 160.49668 * 7 2 1 9 9 N 1.36977 * 119.99864 * 340.50022 * 7 2 1 10 10 C 1.34927 * 126.78631 * 329.01271 * 9 7 2 11 11 O 1.21728 * 125.78811 * 359.97438 * 10 9 7 12 12 N 1.34513 * 108.41523 * 180.02562 * 10 9 7 13 13 C 1.30204 * 109.96089 * 0.02562 * 12 10 9 14 14 N 1.36566 * 109.10579 * 359.97438 * 13 12 10 15 15 C 1.34126 * 110.86570 * 180.02562 * 14 13 12 16 16 O 1.21545 * 123.63699 * 180.02562 * 15 14 13 17 17 N 1.34394 * 112.72529 * 359.97438 * 15 14 13 18 18 C 1.39965 * 126.52699 * 179.97438 * 17 15 14 19 19 C 1.38867 * 120.05716 * 0.03283 * 18 17 15 20 20 C 1.38106 * 119.93818 * 179.97438 * 19 18 17 21 21 C 1.38362 * 120.06332 * 0.26944 * 20 19 18 22 22 Br 1.89091 * 119.94184 * 179.72879 * 21 20 19 23 23 C 1.38360 * 120.11714 * 359.44898 * 21 20 19 24 24 C 1.38115 * 120.06098 * 0.55573 * 23 21 20 25 25 C 1.47288 * 106.95324 * 0.26318 * 17 15 14 26 26 H 0.96996 * 120.00351 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.03106 * 359.94820 * 19 18 17 28 28 H 1.08003 * 119.97144 * 179.97438 * 20 19 18 29 29 H 1.08006 * 119.97379 * 180.25293 * 23 21 20 30 30 H 1.07998 * 120.03376 * 179.70283 * 24 23 21 31 31 H 1.09000 * 110.59560 * 118.26945 * 25 17 15 32 32 H 1.09002 * 110.59363 * 241.20161 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4015 2.1008 -1.3957 5 1 1.4956 2.6236 0.7921 6 1 3.5895 1.4150 0.6039 7 6 2.0090 -1.2035 -0.0005 8 1 3.0426 -1.2302 -0.3128 9 7 1.3831 -2.3559 0.3949 10 6 0.3955 -2.4667 1.3075 11 8 -0.1024 -1.5485 1.9327 12 7 0.0552 -3.7641 1.4100 13 6 0.7842 -4.4799 0.6029 14 7 1.6439 -3.6591 -0.0697 15 6 2.4136 -4.3621 -0.9138 16 8 3.2606 -3.8619 -1.6278 17 7 2.1480 -5.6792 -0.8841 18 6 2.7759 -6.6729 -1.6438 19 6 3.7833 -6.3331 -2.5371 20 6 4.4016 -7.3158 -3.2851 21 6 4.0143 -8.6371 -3.1492 22 35 4.8578 -9.9787 -4.1807 23 6 3.0148 -8.9792 -2.2557 24 6 2.3931 -8.0005 -1.5052 25 6 1.0656 -5.8771 0.0950 26 1 -0.4850 0.8400 0.0004 27 1 4.0828 -5.3013 -2.6472 28 1 5.1849 -7.0520 -3.9804 29 1 2.7171 -10.0119 -2.1484 30 1 1.6097 -8.2675 -0.8113 31 1 0.1830 -6.2958 -0.3886 32 1 1.3986 -6.5197 0.9100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036354561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:02 Heat of formation + Delta-G solvation = 123.170717 kcal Electronic energy + Delta-G solvation = -23758.093864 eV Core-core repulsion = 19963.429165 eV Total energy + Delta-G solvation = -3794.664699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 363.996 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56239 -40.16304 -38.65942 -36.67396 -35.43332 -34.14410 -32.81637 -31.79937 -31.32525 -30.86286 -28.77285 -27.48160 -25.51160 -23.33481 -23.04823 -21.28157 -20.93100 -20.56831 -18.11726 -17.69854 -17.09826 -16.98070 -16.10015 -15.58224 -15.21007 -14.80087 -14.52025 -14.46904 -14.10628 -13.89413 -13.69314 -13.67765 -13.43272 -13.34751 -12.16421 -12.04699 -11.75638 -11.67716 -11.54705 -11.38808 -11.01449 -10.69139 -10.64119 -10.46197 -10.14049 -9.86126 -9.80321 -9.29227 -9.17263 -8.57835 -8.15801 -7.59631 -6.92469 -4.58387 0.81249 1.07916 1.38642 1.52545 1.64687 2.78087 2.95174 3.03522 3.10966 3.19826 3.60322 3.64842 3.84689 4.37053 4.40345 4.62257 4.77561 4.84296 4.91691 5.06186 5.10222 5.17809 5.26707 5.41543 5.67162 5.79514 6.00418 6.05287 6.24836 6.50031 6.58367 6.74798 6.89862 7.26675 7.81452 8.06328 8.21771 8.71177 9.10201 9.77820 10.06011 Molecular weight = 364.00amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.002399 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.100448 B =11667.864002 C =12709.203871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.036 3.964 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.114 0.886 9 N -0.239 5.239 10 C 0.602 3.398 11 O -0.519 6.519 12 N -0.509 5.509 13 C 0.267 3.733 14 N -0.430 5.430 15 C 0.709 3.291 16 O -0.526 6.526 17 N -0.570 5.570 18 C 0.221 3.779 19 C -0.151 4.151 20 C -0.056 4.056 21 C -0.124 4.124 22 Br -0.059 7.059 23 C -0.058 4.058 24 C -0.156 4.156 25 C 0.174 3.826 26 H 0.288 0.712 27 H 0.164 0.836 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.399 -19.598 -7.595 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.388 4.388 8 H 0.132 0.868 9 N -0.043 5.043 10 C 0.303 3.697 11 O -0.390 6.390 12 N -0.256 5.256 13 C -0.006 4.006 14 N -0.237 5.237 15 C 0.414 3.586 16 O -0.398 6.398 17 N -0.297 5.297 18 C 0.126 3.874 19 C -0.172 4.172 20 C -0.077 4.077 21 C -0.204 4.204 22 Br 0.026 6.974 23 C -0.078 4.078 24 C -0.178 4.178 25 C 0.049 3.951 26 H 0.099 0.901 27 H 0.182 0.818 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.240 -18.981 -7.540 21.669 hybrid contribution 0.446 1.138 -0.505 1.323 sum 7.687 -17.842 -8.045 21.027 Atomic orbital electron populations 1.69999 1.06808 1.30357 1.31251 1.26115 0.95980 1.01245 0.95168 0.85391 0.79522 0.77901 0.78927 1.19348 1.19432 1.18162 1.20534 0.93979 0.78728 1.45603 0.86816 1.48030 1.34448 0.93756 1.28092 1.17394 0.80653 0.86212 0.85478 1.90838 1.55352 1.41036 1.51756 1.70864 1.26723 1.04305 1.23743 1.24173 0.88125 0.93049 0.95235 1.50094 1.32453 1.06180 1.34923 1.16182 0.81516 0.80333 0.80581 1.90805 1.34247 1.71989 1.42772 1.45204 1.37657 1.05443 1.41404 1.17533 0.92465 0.86415 0.90982 1.21613 0.96485 1.02543 0.96550 1.20990 0.98524 0.90231 0.97908 1.21692 1.02581 0.93400 1.02730 1.96684 1.79679 1.50900 1.70159 1.20828 0.93765 0.99664 0.93584 1.20712 1.03491 0.89989 1.03627 1.20522 0.91518 0.90807 0.92217 0.90102 0.81836 0.84540 0.84459 0.84279 0.85742 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.00 11.15 55.50 0.62 -20.38 16 2 C 0.04 0.94 4.93 -17.46 -0.09 0.85 16 3 Si 0.96 19.50 29.60 -169.99 -5.03 14.47 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.25 -6.71 10.33 -14.98 -0.15 -6.87 16 8 H 0.11 2.93 7.90 -52.48 -0.41 2.52 16 9 N -0.24 -6.48 3.65 -15.36 -0.06 -6.54 16 10 C 0.60 17.00 8.28 -87.02 -0.72 16.28 16 11 O -0.52 -16.19 15.44 5.16 0.08 -16.11 16 12 N -0.51 -12.24 11.20 -13.41 -0.15 -12.39 16 13 C 0.27 5.26 8.93 -153.96 -1.38 3.89 16 14 N -0.43 -9.86 4.32 -13.73 -0.06 -9.92 16 15 C 0.71 14.32 8.59 -87.84 -0.75 13.56 16 16 O -0.53 -11.73 14.97 5.33 0.08 -11.65 16 17 N -0.57 -8.45 3.20 -119.48 -0.38 -8.83 16 18 C 0.22 2.80 6.65 -83.68 -0.56 2.24 16 19 C -0.15 -2.00 9.35 -39.40 -0.37 -2.37 16 20 C -0.06 -0.62 9.78 -39.58 -0.39 -1.00 16 21 C -0.12 -1.24 6.22 -39.49 -0.25 -1.48 16 22 Br -0.06 -0.53 33.70 -68.01 -2.29 -2.82 16 23 C -0.06 -0.51 9.78 -39.58 -0.39 -0.90 16 24 C -0.16 -1.45 9.52 -39.40 -0.37 -1.82 16 25 C 0.17 2.15 6.50 -4.47 -0.03 2.12 16 26 H 0.29 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.16 2.57 5.39 -52.48 -0.28 2.29 16 28 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 30 H 0.14 0.89 7.37 -52.49 -0.39 0.50 16 31 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -34.66 308.77 -9.89 -44.55 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -1.91 Total: 0.48 kcal Atomic # 6 Polarization: 29.93 SS G_CDS: -5.44 Total: 24.49 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.03 Total: -58.06 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: 0.16 Total: -27.76 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.66 -9.89 -44.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036354561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.723 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds