Wall clock time and date at job start Tue Mar 31 2020 06:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86802 * 119.99947 * 2 1 4 4 H 1.48492 * 109.47576 * 274.45088 * 3 2 1 5 5 H 1.48503 * 109.46707 * 34.45084 * 3 2 1 6 6 H 1.48495 * 109.47395 * 154.44717 * 3 2 1 7 7 C 1.38973 * 120.00445 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00294 * 160.49668 * 7 2 1 9 9 N 1.36977 * 119.99864 * 340.50022 * 7 2 1 10 10 C 1.34927 * 126.78631 * 329.01271 * 9 7 2 11 11 O 1.21728 * 125.78811 * 359.97438 * 10 9 7 12 12 N 1.34513 * 108.41523 * 180.02562 * 10 9 7 13 13 C 1.30204 * 109.96089 * 0.02562 * 12 10 9 14 14 N 1.36566 * 109.10579 * 359.97438 * 13 12 10 15 15 C 1.34126 * 110.86570 * 180.02562 * 14 13 12 16 16 O 1.21545 * 123.63699 * 180.02562 * 15 14 13 17 17 N 1.34394 * 112.72529 * 359.97438 * 15 14 13 18 18 C 1.39965 * 126.52699 * 179.97438 * 17 15 14 19 19 C 1.38867 * 120.05716 * 0.03283 * 18 17 15 20 20 C 1.38106 * 119.93818 * 179.97438 * 19 18 17 21 21 C 1.38362 * 120.06332 * 0.26944 * 20 19 18 22 22 Br 1.89091 * 119.94184 * 179.72879 * 21 20 19 23 23 C 1.38360 * 120.11714 * 359.44898 * 21 20 19 24 24 C 1.38115 * 120.06098 * 0.55573 * 23 21 20 25 25 C 1.47288 * 106.95324 * 0.26318 * 17 15 14 26 26 H 0.96996 * 120.00351 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.03106 * 359.94820 * 19 18 17 28 28 H 1.08003 * 119.97144 * 179.97438 * 20 19 18 29 29 H 1.08006 * 119.97379 * 180.25293 * 23 21 20 30 30 H 1.07998 * 120.03376 * 179.70283 * 24 23 21 31 31 H 1.09000 * 110.59560 * 118.26945 * 25 17 15 32 32 H 1.09002 * 110.59363 * 241.20161 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4015 2.1008 -1.3957 5 1 1.4956 2.6236 0.7921 6 1 3.5895 1.4150 0.6039 7 6 2.0090 -1.2035 -0.0005 8 1 3.0426 -1.2302 -0.3128 9 7 1.3831 -2.3559 0.3949 10 6 0.3955 -2.4667 1.3075 11 8 -0.1024 -1.5485 1.9327 12 7 0.0552 -3.7641 1.4100 13 6 0.7842 -4.4799 0.6029 14 7 1.6439 -3.6591 -0.0697 15 6 2.4136 -4.3621 -0.9138 16 8 3.2606 -3.8619 -1.6278 17 7 2.1480 -5.6792 -0.8841 18 6 2.7759 -6.6729 -1.6438 19 6 3.7833 -6.3331 -2.5371 20 6 4.4016 -7.3158 -3.2851 21 6 4.0143 -8.6371 -3.1492 22 35 4.8578 -9.9787 -4.1807 23 6 3.0148 -8.9792 -2.2557 24 6 2.3931 -8.0005 -1.5052 25 6 1.0656 -5.8771 0.0950 26 1 -0.4850 0.8400 0.0004 27 1 4.0828 -5.3013 -2.6472 28 1 5.1849 -7.0520 -3.9804 29 1 2.7171 -10.0119 -2.1484 30 1 1.6097 -8.2675 -0.8113 31 1 0.1830 -6.2958 -0.3886 32 1 1.3986 -6.5197 0.9100 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036354561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:01 Heat of formation + Delta-G solvation = 98.517992 kcal Electronic energy + Delta-G solvation = -23759.162887 eV Core-core repulsion = 19963.429165 eV Total energy + Delta-G solvation = -3795.733722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 363.996 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.30833 -41.64269 -39.86272 -38.42974 -37.18353 -36.00714 -34.23506 -33.56557 -32.15924 -32.09339 -30.01463 -28.68231 -27.37433 -24.51844 -24.29090 -22.87405 -22.63136 -21.94777 -19.86029 -19.09755 -18.65200 -18.48575 -17.39439 -17.01551 -16.72730 -16.29877 -16.19866 -15.98600 -15.40876 -15.30102 -15.02853 -14.85700 -14.54315 -14.38299 -13.89464 -13.55785 -13.35976 -13.07063 -12.99504 -12.52678 -12.37400 -12.31006 -12.21281 -11.71707 -11.50641 -11.17505 -11.13703 -10.96813 -10.64739 -10.09466 -9.70483 -9.08774 -8.79283 -6.60977 -0.30719 -0.16324 0.18787 0.27011 0.68933 1.28398 1.35579 1.46235 1.56042 1.66470 2.04906 2.22321 2.46074 2.61413 2.80861 3.21144 3.37623 3.80535 3.87925 4.07454 4.18166 4.20340 4.25291 4.42305 4.64371 4.72057 4.82357 5.01072 5.04049 5.20345 5.24017 5.26992 5.63916 5.80892 5.88300 6.34366 6.47770 6.75171 7.17603 7.71736 8.24485 Molecular weight = 364.00amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.002399 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.100448 B =11667.864002 C =12709.203871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C -0.001 4.001 3 Si 1.028 2.972 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.320 4.320 8 H 0.107 0.893 9 N -0.251 5.251 10 C 0.585 3.415 11 O -0.566 6.566 12 N -0.535 5.535 13 C 0.302 3.698 14 N -0.444 5.444 15 C 0.706 3.294 16 O -0.555 6.555 17 N -0.548 5.548 18 C 0.195 3.805 19 C -0.170 4.170 20 C -0.062 4.062 21 C -0.122 4.122 22 Br -0.047 7.047 23 C -0.052 4.052 24 C -0.127 4.127 25 C 0.179 3.821 26 H 0.288 0.712 27 H 0.130 0.870 28 H 0.142 0.858 29 H 0.172 0.828 30 H 0.186 0.814 31 H 0.183 0.817 32 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.749 -24.858 -8.174 27.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.215 4.215 3 Si 0.845 3.155 4 H -0.176 1.176 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.454 4.454 8 H 0.125 0.875 9 N -0.059 5.059 10 C 0.286 3.714 11 O -0.440 6.440 12 N -0.281 5.281 13 C 0.029 3.971 14 N -0.253 5.253 15 C 0.410 3.590 16 O -0.429 6.429 17 N -0.276 5.276 18 C 0.102 3.898 19 C -0.192 4.192 20 C -0.083 4.083 21 C -0.202 4.202 22 Br 0.038 6.962 23 C -0.072 4.072 24 C -0.148 4.148 25 C 0.058 3.942 26 H 0.098 0.902 27 H 0.147 0.853 28 H 0.160 0.840 29 H 0.190 0.810 30 H 0.203 0.797 31 H 0.200 0.800 32 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 7.636 -24.298 -8.175 26.749 hybrid contribution 0.496 2.099 -0.465 2.207 sum 8.132 -22.198 -8.640 25.170 Atomic orbital electron populations 1.70089 1.08526 1.30927 1.35318 1.27106 0.96586 1.04290 0.93567 0.84484 0.78133 0.73226 0.79691 1.17593 1.19137 1.17519 1.20419 0.94829 0.80078 1.50091 0.87535 1.46893 1.34813 0.94250 1.29919 1.17738 0.81565 0.87265 0.84859 1.90756 1.57827 1.42816 1.52627 1.70801 1.28441 1.02932 1.25964 1.25740 0.85040 0.95625 0.90648 1.48698 1.34700 1.05060 1.36826 1.15947 0.81000 0.82225 0.79785 1.90819 1.35341 1.73117 1.43582 1.44900 1.37960 1.02896 1.41810 1.17725 0.93360 0.86963 0.91756 1.21419 0.97980 1.01527 0.98244 1.21010 0.98770 0.90562 0.97919 1.21939 1.02552 0.93094 1.02651 1.96725 1.79635 1.49861 1.69981 1.21282 0.92463 1.01256 0.92156 1.21127 1.03160 0.87512 1.02988 1.21474 0.92932 0.86214 0.93624 0.90228 0.85260 0.84035 0.81049 0.79675 0.79951 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.13 11.15 21.67 0.24 -48.89 16 2 C 0.00 -0.07 4.93 84.93 0.42 0.35 16 3 Si 1.03 42.69 29.60 68.60 2.03 44.72 16 4 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 7 C -0.32 -18.61 10.33 84.07 0.87 -17.74 16 8 H 0.11 6.02 7.90 -2.91 -0.02 5.99 16 9 N -0.25 -14.37 3.65 -320.64 -1.17 -15.54 16 10 C 0.58 34.67 8.28 179.09 1.48 36.16 16 11 O -0.57 -37.68 15.44 -4.44 -0.07 -37.75 16 12 N -0.53 -25.69 11.20 -314.69 -3.53 -29.22 16 13 C 0.30 11.19 8.93 137.91 1.23 12.43 16 14 N -0.44 -20.42 4.32 -316.01 -1.37 -21.79 16 15 C 0.71 28.03 8.59 179.38 1.54 29.57 16 16 O -0.56 -25.49 14.97 -3.86 -0.06 -25.55 16 17 N -0.55 -14.00 3.20 -650.41 -2.08 -16.08 16 18 C 0.19 4.07 6.65 38.14 0.25 4.32 16 19 C -0.17 -4.25 9.35 22.39 0.21 -4.04 16 20 C -0.06 -1.23 9.78 22.27 0.22 -1.01 16 21 C -0.12 -1.93 6.22 22.33 0.14 -1.79 16 22 Br -0.05 -0.68 33.70 -20.37 -0.69 -1.37 16 23 C -0.05 -0.58 9.78 22.27 0.22 -0.36 16 24 C -0.13 -1.44 9.52 22.39 0.21 -1.22 16 25 C 0.18 3.25 6.50 85.67 0.56 3.81 16 26 H 0.29 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.13 4.18 5.39 -2.91 -0.02 4.17 16 28 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 29 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 30 H 0.19 0.45 7.37 -2.91 -0.02 0.43 16 31 H 0.18 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.19 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -89.01 308.77 1.87 -87.14 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: 1.20 Total: 3.88 kcal Atomic # 6 Polarization: 53.10 SS G_CDS: 7.35 Total: 60.45 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -7.90 Total: -131.52 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.13 Total: -63.30 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -0.69 Total: -1.37 kcal Total: -89.01 1.87 -87.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036354561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.661 kcal (2) G-P(sol) polarization free energy of solvation -89.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds