Wall clock time and date at job start Tue Mar 31 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 O 1.21281 * 119.99941 * 2 1 4 4 N 1.34779 * 119.99684 * 179.97438 * 2 1 3 5 5 C 1.47084 * 120.87657 * 179.97438 * 4 2 1 6 6 C 1.53242 * 108.51878 * 128.83934 * 5 4 2 7 7 N 1.46894 * 109.33782 * 53.83042 * 6 5 4 8 8 C 1.46904 * 110.99860 * 172.74966 * 7 6 5 9 9 C 1.50702 * 109.47440 * 64.76914 * 8 7 6 10 10 O 1.21292 * 119.99562 * 354.41423 * 9 8 7 11 11 N 1.34773 * 119.99648 * 174.40913 * 9 8 7 12 12 C 1.46494 * 120.00462 * 0.02562 * 11 9 8 13 13 C 1.50700 * 109.47550 * 89.99785 * 12 11 9 14 14 H 1.07998 * 119.99707 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00022 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99916 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99720 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46924 * 89.99903 * 17 15 13 19 19 H 1.48500 * 109.46945 * 209.99739 * 17 15 13 20 20 H 1.48495 * 109.47397 * 329.99856 * 17 15 13 21 21 C 1.40053 * 119.99468 * 180.02562 * 11 9 8 22 22 C 1.38807 * 120.07566 * 90.00248 * 21 11 9 23 23 C 1.38144 * 119.95106 * 179.97438 * 22 21 11 24 24 C 1.38283 * 120.11033 * 0.02751 * 23 22 21 25 25 C 1.38265 * 120.16044 * 359.97193 * 24 23 22 26 26 C 1.38312 * 120.04236 * 359.75027 * 25 24 23 27 27 F 1.35101 * 120.05430 * 180.28062 * 26 25 24 28 28 C 1.46901 * 111.26895 * 296.89149 * 7 6 5 29 29 C 1.47073 * 120.88259 * 0.02562 * 4 2 1 30 30 H 1.09001 * 109.46715 * 269.99987 * 1 2 3 31 31 H 1.08994 * 109.46917 * 30.00180 * 1 2 3 32 32 H 1.09001 * 109.47186 * 150.00095 * 1 2 3 33 33 H 1.09001 * 109.62818 * 9.13260 * 5 4 2 34 34 H 1.08999 * 109.62589 * 248.54988 * 5 4 2 35 35 H 1.08996 * 109.48850 * 173.79215 * 6 5 4 36 36 H 1.09000 * 109.49178 * 293.86726 * 6 5 4 37 37 H 1.09000 * 109.47153 * 184.77290 * 8 7 6 38 38 H 1.09001 * 109.46694 * 304.77180 * 8 7 6 39 39 H 1.09004 * 109.47023 * 209.99851 * 12 11 9 40 40 H 1.09002 * 109.46758 * 329.99236 * 12 11 9 41 41 H 0.97005 * 119.99755 * 180.02562 * 16 15 13 42 42 H 1.07993 * 120.02296 * 359.97438 * 22 21 11 43 43 H 1.08002 * 119.94554 * 180.02562 * 23 22 21 44 44 H 1.08003 * 119.91921 * 179.97438 * 24 23 22 45 45 H 1.08003 * 119.97571 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.49679 * 303.14548 * 28 7 6 47 47 H 1.09002 * 109.49230 * 183.07252 * 28 7 6 48 48 H 1.08995 * 109.63374 * 350.87145 * 29 4 2 49 49 H 1.09001 * 109.62834 * 111.45583 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.6516 -1.1898 0.0000 6 6 4.1247 -2.1077 1.1322 7 7 3.4832 -3.4219 0.9932 8 6 4.0386 -4.3832 1.9553 9 6 3.7080 -3.9392 3.3570 10 8 3.1615 -2.8723 3.5421 11 7 4.0195 -4.7277 4.4046 12 6 4.6799 -6.0161 4.1810 13 6 6.1746 -5.8251 4.2035 14 1 6.5909 -4.8422 4.3676 15 6 7.0105 -6.9050 4.0137 16 7 6.5035 -8.1018 3.8134 17 14 8.8632 -6.6681 4.0409 18 1 9.3639 -6.8404 5.4283 19 1 9.5038 -7.6731 3.1551 20 1 9.1948 -5.3025 3.5611 21 6 3.7117 -4.3154 5.7072 22 6 2.4867 -4.6456 6.2702 23 6 2.1860 -4.2380 7.5555 24 6 3.1031 -3.5009 8.2819 25 6 4.3247 -3.1694 7.7256 26 6 4.6348 -3.5790 6.4414 27 9 5.8307 -3.2601 5.8997 28 6 2.0244 -3.3202 1.1333 29 6 1.4652 -2.4521 0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 4.0333 -0.1818 0.1621 34 1 4.0115 -1.5715 -0.9555 35 1 5.2071 -2.2237 1.0780 36 1 3.8530 -1.6700 2.0928 37 1 3.6077 -5.3680 1.7749 38 1 5.1209 -4.4327 1.8357 39 1 4.3909 -6.7138 4.9670 40 1 4.3791 -6.4152 3.2123 41 1 7.0916 -8.8616 3.6802 42 1 1.7692 -5.2208 5.7040 43 1 1.2329 -4.4953 7.9936 44 1 2.8647 -3.1835 9.2863 45 1 5.0387 -2.5932 8.2955 46 1 1.7820 -2.8658 2.0938 47 1 1.5837 -4.3158 1.0800 48 1 0.4015 -2.2787 0.1629 49 1 1.6155 -2.9549 -0.9548 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036437859.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:45 Heat of formation + Delta-G solvation = -60.070427 kcal Electronic energy + Delta-G solvation = -34246.831940 eV Core-core repulsion = 29703.237814 eV Total energy + Delta-G solvation = -4543.594126 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 363.175 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -48.31810 -40.48604 -39.71692 -38.49755 -37.16464 -35.24656 -34.31415 -32.72270 -31.61867 -30.54795 -30.14791 -29.63757 -28.18094 -27.10378 -25.01527 -23.62815 -23.17682 -22.53677 -22.23788 -21.20600 -19.37169 -18.68685 -17.34305 -17.16226 -16.90480 -16.68856 -16.18417 -15.97763 -15.76378 -15.50717 -15.08751 -14.96386 -14.88447 -14.62295 -14.44809 -14.25368 -14.00113 -13.76830 -13.47826 -13.34321 -13.00260 -12.80066 -12.50490 -12.31439 -12.06679 -12.02476 -11.97428 -11.85198 -11.71112 -11.49531 -11.34789 -11.17169 -11.00898 -10.94002 -10.82159 -10.74912 -10.29155 -9.94818 -9.81473 -9.80608 -8.78679 -8.72387 -8.62591 -8.33289 -8.12593 -7.85184 -6.25714 -4.32338 1.40204 1.45376 2.60690 2.98260 3.03743 3.20816 3.28109 3.32825 3.59758 3.82240 4.04533 4.29605 4.51494 4.61458 4.88596 4.97167 4.99379 5.05555 5.08754 5.09915 5.17295 5.22119 5.26514 5.37730 5.40394 5.45374 5.54973 5.56434 5.67163 5.72520 5.77173 5.79859 5.90965 6.07517 6.17590 6.21515 6.31759 6.35102 6.47110 6.51901 6.53326 6.62910 6.88611 7.02187 7.07893 7.15295 7.41303 7.46266 7.71345 7.92955 8.02436 8.14569 8.65583 8.81350 9.36278 10.81764 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.003605 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.879747 B = 7764.062760 C = 9547.147284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.555 6.555 4 N -0.609 5.609 5 C 0.119 3.881 6 C 0.024 3.976 7 N -0.513 5.513 8 C 0.044 3.956 9 C 0.493 3.507 10 O -0.559 6.559 11 N -0.558 5.558 12 C 0.239 3.761 13 C -0.542 4.542 14 H 0.069 0.931 15 C 0.069 3.931 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.132 3.868 22 C -0.089 4.089 23 C -0.131 4.131 24 C -0.099 4.099 25 C -0.158 4.158 26 C 0.117 3.883 27 F -0.125 7.125 28 C 0.021 3.979 29 C 0.113 3.887 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.037 0.963 40 H 0.046 0.954 41 H 0.266 0.734 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.160 6.298 -1.543 13.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.433 6.433 4 N -0.343 5.343 5 C -0.003 4.003 6 C -0.104 4.104 7 N -0.236 5.236 8 C -0.086 4.086 9 C 0.282 3.718 10 O -0.440 6.440 11 N -0.287 5.287 12 C 0.121 3.879 13 C -0.580 4.580 14 H 0.087 0.913 15 C -0.135 4.135 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.040 3.960 22 C -0.109 4.109 23 C -0.150 4.150 24 C -0.117 4.117 25 C -0.177 4.177 26 C 0.096 3.904 27 F -0.103 7.103 28 C -0.108 4.108 29 C -0.010 4.010 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.106 0.894 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.911 7.022 -2.043 13.977 hybrid contribution 1.297 -0.089 0.924 1.595 sum -10.614 6.933 -1.119 12.727 Atomic orbital electron populations 1.21948 0.92109 1.04578 1.04764 1.20766 0.90568 0.83066 0.75482 1.90693 1.70759 1.31119 1.50769 1.48197 1.07344 1.05979 1.72809 1.21693 0.79036 1.00720 0.98881 1.22710 0.99206 0.89241 0.99275 1.62448 1.04294 1.09109 1.47717 1.22305 1.03785 0.96925 0.85612 1.22032 0.77667 0.83862 0.88200 1.90558 1.44339 1.22911 1.86197 1.46103 1.58282 1.22355 1.01973 1.19627 0.92548 0.77417 0.98315 1.21545 0.90451 0.95404 1.50612 0.91316 1.24899 0.99202 0.94854 0.94516 1.69912 1.35657 0.99253 1.48083 0.86513 0.84796 0.78208 0.78150 1.20527 1.20985 1.19622 1.17617 0.93204 0.98063 0.87122 1.21185 0.95228 0.99039 0.95413 1.20977 0.99915 0.99776 0.94293 1.20909 0.92929 0.98065 0.99775 1.21046 0.98951 1.03601 0.94118 1.18043 0.82017 0.97909 0.92393 1.91519 1.42449 1.90423 1.85896 1.22722 0.88808 1.00150 0.99120 1.21909 0.96137 0.83330 0.99602 0.88880 0.89116 0.89969 0.89057 0.91108 0.89943 0.90843 0.87458 0.86202 0.94473 0.93589 0.92443 0.85410 0.85512 0.85374 0.84964 0.90911 0.90123 0.89439 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.44 36.01 0.34 -1.20 16 2 C 0.51 7.00 7.82 -10.98 -0.09 6.92 16 3 O -0.55 -9.85 16.55 5.56 0.09 -9.76 16 4 N -0.61 -7.94 3.01 -172.43 -0.52 -8.46 16 5 C 0.12 1.65 6.60 -3.60 -0.02 1.63 16 6 C 0.02 0.37 5.21 -3.70 -0.02 0.35 16 7 N -0.51 -7.59 4.83 -235.73 -1.14 -8.73 16 8 C 0.04 0.74 4.55 -4.97 -0.02 0.72 16 9 C 0.49 9.49 7.04 -10.99 -0.08 9.41 16 10 O -0.56 -11.52 11.64 5.55 0.06 -11.46 16 11 N -0.56 -11.33 2.33 -114.67 -0.27 -11.60 16 12 C 0.24 5.39 4.98 -5.20 -0.03 5.37 16 13 C -0.54 -13.67 9.33 -34.44 -0.32 -13.99 16 14 H 0.07 1.81 6.40 -52.49 -0.34 1.48 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 17 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.13 2.56 4.47 -83.59 -0.37 2.18 16 22 C -0.09 -1.44 9.97 -39.41 -0.39 -1.83 16 23 C -0.13 -1.73 10.04 -39.60 -0.40 -2.13 16 24 C -0.10 -1.28 10.04 -39.55 -0.40 -1.68 16 25 C -0.16 -2.44 10.02 -39.54 -0.40 -2.84 16 26 C 0.12 2.28 7.31 -39.25 -0.29 1.99 16 27 F -0.12 -2.72 15.65 2.25 0.04 -2.68 16 28 C 0.02 0.27 5.12 -3.68 -0.02 0.25 16 29 C 0.11 1.19 6.36 -3.58 -0.02 1.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.53 6.26 -51.93 -0.33 0.20 16 33 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.24 8.06 -51.93 -0.42 0.82 16 36 H 0.07 1.37 5.75 -51.93 -0.30 1.07 16 37 H 0.11 1.69 7.10 -51.93 -0.37 1.33 16 38 H 0.12 2.17 8.07 -51.93 -0.42 1.75 16 39 H 0.04 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.05 1.03 6.29 -51.93 -0.33 0.70 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 45 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 46 H 0.07 1.15 5.72 -51.93 -0.30 0.86 16 47 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 48 H 0.09 0.69 5.64 -51.93 -0.29 0.39 16 49 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -31.83 397.53 -9.45 -41.28 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.81 Total: 5.00 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -2.62 Total: 7.98 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -1.19 Total: -51.80 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: 0.16 Total: -21.21 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.83 -9.45 -41.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036437859.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.794 kcal (2) G-P(sol) polarization free energy of solvation -31.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds