Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47490 * 240.00138 * 3 2 1 5 5 H 1.48501 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47134 * 120.00219 * 3 2 1 7 7 C 1.40312 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00629 * 180.02562 * 7 2 1 9 9 C 1.39983 * 119.99311 * 359.97438 * 7 2 1 10 10 N 1.33287 * 126.82907 * 0.02978 * 9 7 2 11 11 N 1.28741 * 109.53229 * 180.92411 * 10 9 7 12 12 C 1.31107 * 110.09241 * 0.37723 * 11 10 9 13 13 N 1.35391 * 107.83952 * 358.44541 * 12 11 10 14 14 C 1.39244 * 126.10253 * 183.81489 * 13 12 11 15 15 C 1.39225 * 118.27595 * 142.30820 * 14 13 12 16 16 C 1.37863 * 120.48666 * 182.63814 * 15 14 13 17 17 C 1.38620 * 120.00430 * 359.73487 * 16 15 14 18 18 Cl 1.73603 * 119.89969 * 179.26885 * 17 16 15 19 19 C 1.37682 * 120.20293 * 359.25817 * 17 16 15 20 20 C 1.39716 * 121.87669 * 323.55113 * 14 13 12 21 21 C 1.46702 * 122.99103 * 355.72726 * 20 14 13 22 22 C 1.48146 * 116.05722 * 221.70316 * 21 20 14 23 23 C 1.39469 * 120.12997 * 204.98049 * 22 21 20 24 24 C 1.37983 * 119.85957 * 179.72071 * 23 22 21 25 25 C 1.38348 * 120.13806 * 0.55027 * 24 23 22 26 26 C 1.38353 * 120.26306 * 359.72220 * 25 24 23 27 27 C 1.37975 * 120.13713 * 0.02562 * 26 25 24 28 28 N 1.28807 * 127.88420 * 41.67588 * 21 20 14 29 29 C 1.46664 * 121.92604 * 1.16484 * 28 21 20 30 30 H 0.96999 * 119.99975 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.75663 * 2.62439 * 15 14 13 32 32 H 1.08008 * 120.00088 * 179.74455 * 16 15 14 33 33 H 1.07996 * 119.72982 * 180.85850 * 19 17 16 34 34 H 1.07999 * 120.07350 * 359.97213 * 23 22 21 35 35 H 1.08009 * 119.93114 * 180.25152 * 24 23 22 36 36 H 1.07996 * 119.86632 * 179.69967 * 25 24 23 37 37 H 1.08004 * 119.92863 * 179.97438 * 26 25 24 38 38 H 1.08000 * 120.06734 * 180.02562 * 27 26 25 39 39 H 1.09002 * 109.79371 * 58.53298 * 29 28 21 40 40 H 1.08997 * 109.79806 * 179.38992 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0082 -1.2151 -0.0005 8 1 3.0881 -1.2151 -0.0001 9 6 1.3082 -2.4273 -0.0005 10 7 -0.0152 -2.5858 -0.0006 11 7 -0.2984 -3.8415 0.0190 12 6 0.8036 -4.5514 0.0407 13 7 1.8504 -3.6938 -0.0005 14 6 3.1962 -4.0444 -0.0698 15 6 4.0419 -3.2632 -0.8527 16 6 5.3708 -3.6002 -0.9972 17 6 5.8754 -4.7209 -0.3562 18 17 7.5449 -5.1535 -0.5553 19 6 5.0568 -5.4920 0.4381 20 6 3.7029 -5.1617 0.5988 21 6 2.8900 -5.9949 1.4917 22 6 3.5434 -6.4326 2.7473 23 6 3.1129 -7.5912 3.3934 24 6 3.7292 -7.9968 4.5594 25 6 4.7645 -7.2507 5.0938 26 6 5.1921 -6.0974 4.4603 27 6 4.5872 -5.6844 3.2911 28 7 1.6772 -6.3917 1.3169 29 6 0.9172 -6.0542 0.1087 30 1 -0.4850 0.8400 -0.0004 31 1 3.6539 -2.3869 -1.3506 32 1 6.0189 -2.9909 -1.6097 33 1 5.4612 -6.3556 0.9450 34 1 2.3017 -8.1719 2.9799 35 1 3.3995 -8.8961 5.0586 36 1 5.2406 -7.5697 6.0092 37 1 6.0005 -5.5189 4.8825 38 1 4.9221 -4.7841 2.7973 39 1 1.4409 -6.4251 -0.7724 40 1 -0.0770 -6.4976 0.1621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039247014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = 144.639309 kcal Electronic energy + Delta-G solvation = -29532.859745 eV Core-core repulsion = 25532.528788 eV Total energy + Delta-G solvation = -4000.330957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.079 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.68432 -39.75608 -38.64821 -36.78066 -36.12410 -34.00992 -33.77091 -32.21847 -31.15691 -30.41474 -29.59132 -29.16185 -27.24150 -25.35998 -24.00357 -23.07416 -22.34673 -22.25802 -20.67421 -19.90874 -19.37239 -17.75328 -17.08473 -16.68665 -16.37143 -15.62622 -15.36427 -15.24878 -15.01868 -14.53478 -14.30153 -14.02535 -13.94697 -13.53240 -13.48297 -13.33800 -13.20363 -12.73074 -12.65334 -12.35747 -11.98278 -11.78059 -11.51293 -11.44416 -11.28683 -11.10904 -11.05877 -10.87941 -10.62489 -10.54148 -9.95069 -9.84593 -9.79150 -9.43026 -9.00321 -8.89386 -8.68021 -8.42506 -8.00452 -7.87172 -6.91211 -4.88368 0.71380 1.08251 1.18893 1.44374 2.10535 2.55909 2.76855 2.92367 2.95429 3.10918 3.48081 3.66199 3.77775 3.91201 4.13466 4.30466 4.49772 4.83208 4.94367 4.96058 5.04457 5.08949 5.12259 5.16060 5.26960 5.41865 5.49215 5.59281 5.61402 5.67210 5.84420 5.91194 5.98070 6.04484 6.07823 6.20343 6.27704 6.48613 6.51242 6.54924 6.58566 6.66983 6.84611 6.95820 6.97467 7.27155 7.80239 7.90440 7.91488 8.40738 8.57544 10.00198 10.41923 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.004141 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.993179 B = 6759.518251 C = 8176.556792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.719 5.719 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.432 4.432 8 H 0.094 0.906 9 C 0.341 3.659 10 N -0.341 5.341 11 N -0.259 5.259 12 C 0.032 3.968 13 N -0.472 5.472 14 C 0.217 3.783 15 C -0.130 4.130 16 C -0.071 4.071 17 C -0.066 4.066 18 Cl -0.076 7.076 19 C -0.056 4.056 20 C -0.124 4.124 21 C 0.257 3.743 22 C -0.056 4.056 23 C -0.074 4.074 24 C -0.130 4.130 25 C -0.111 4.111 26 C -0.126 4.126 27 C -0.092 4.092 28 N -0.487 5.487 29 C 0.146 3.854 30 H 0.286 0.714 31 H 0.156 0.844 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.069 0.931 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.226 -9.359 3.191 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.341 5.341 2 C -0.153 4.153 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.112 0.888 9 C 0.103 3.897 10 N -0.188 5.188 11 N -0.099 5.099 12 C -0.231 4.231 13 N -0.166 5.166 14 C 0.116 3.884 15 C -0.151 4.151 16 C -0.090 4.090 17 C -0.094 4.094 18 Cl -0.047 7.047 19 C -0.077 4.077 20 C -0.130 4.130 21 C 0.067 3.933 22 C -0.057 4.057 23 C -0.093 4.093 24 C -0.148 4.148 25 C -0.130 4.130 26 C -0.144 4.144 27 C -0.111 4.111 28 N -0.193 5.193 29 C 0.016 3.984 30 H 0.097 0.903 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.589 -9.416 3.476 15.331 hybrid contribution 2.213 1.052 -0.559 2.513 sum 13.801 -8.364 2.917 16.400 Atomic orbital electron populations 1.69910 1.07303 1.29576 1.27334 1.25907 0.95021 1.01015 0.93359 0.86129 0.79893 0.79332 0.80169 1.18507 1.19717 1.18600 1.18496 0.94359 0.87045 1.47089 0.88823 1.21799 0.89780 0.82995 0.95079 1.75835 1.07989 1.04035 1.30956 1.73996 1.23018 1.00655 1.12227 1.23960 0.84971 0.93525 1.20632 1.43496 1.03117 1.08326 1.61642 1.17645 0.83813 0.93535 0.93385 1.21390 0.92853 1.02030 0.98815 1.20981 0.94921 0.95020 0.98123 1.20555 0.85852 0.98794 1.04159 1.98349 1.16716 1.92924 1.96703 1.21026 0.90849 0.99027 0.96787 1.18907 0.94152 0.98757 1.01218 1.20610 0.89822 0.91159 0.91697 1.18867 0.96399 0.96220 0.94226 1.21326 0.98101 0.95492 0.94430 1.21113 0.96993 1.00298 0.96393 1.21246 0.97055 0.95139 0.99534 1.21049 1.00526 0.97128 0.95657 1.21394 0.94779 0.99200 0.95764 1.71789 1.05343 1.20505 1.21644 1.20468 1.00337 0.86811 0.90791 0.90301 0.82663 0.84242 0.84298 0.84935 0.85896 0.86148 0.85817 0.85551 0.91258 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.73 11.96 55.57 0.66 -18.07 16 2 C 0.07 1.79 5.50 -17.27 -0.10 1.70 16 3 Si 0.92 17.28 29.56 -169.99 -5.03 12.25 16 4 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.43 -10.68 8.14 -38.15 -0.31 -10.99 16 8 H 0.09 2.07 5.85 -52.49 -0.31 1.77 16 9 C 0.34 9.12 7.32 -155.13 -1.14 7.98 16 10 N -0.34 -10.02 10.55 31.22 0.33 -9.69 16 11 N -0.26 -7.13 12.22 32.91 0.40 -6.72 16 12 C 0.03 0.77 7.40 -154.51 -1.14 -0.38 16 13 N -0.47 -11.15 2.89 -57.02 -0.16 -11.31 16 14 C 0.22 4.22 6.14 -83.57 -0.51 3.71 16 15 C -0.13 -2.21 8.40 -39.35 -0.33 -2.54 16 16 C -0.07 -0.96 9.82 -39.58 -0.39 -1.34 16 17 C -0.07 -0.86 6.30 -39.64 -0.25 -1.11 16 18 Cl -0.08 -0.85 28.95 -51.86 -1.50 -2.35 16 19 C -0.06 -0.77 7.48 -39.02 -0.29 -1.06 16 20 C -0.12 -2.09 4.71 -105.16 -0.50 -2.58 16 21 C 0.26 4.42 6.23 -81.65 -0.51 3.91 16 22 C -0.06 -0.83 5.20 -104.91 -0.55 -1.38 16 23 C -0.07 -0.97 9.48 -39.22 -0.37 -1.35 16 24 C -0.13 -1.41 10.03 -39.63 -0.40 -1.81 16 25 C -0.11 -1.13 10.04 -39.50 -0.40 -1.53 16 26 C -0.13 -1.39 10.03 -39.64 -0.40 -1.79 16 27 C -0.09 -1.22 8.18 -39.22 -0.32 -1.54 16 28 N -0.49 -8.98 9.50 -57.10 -0.54 -9.53 16 29 C 0.15 2.80 6.88 -5.03 -0.03 2.77 16 30 H 0.29 6.69 8.29 -40.82 -0.34 6.35 16 31 H 0.16 2.77 6.08 -52.49 -0.32 2.46 16 32 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.14 1.69 7.10 -52.49 -0.37 1.32 16 34 H 0.13 1.72 7.63 -52.49 -0.40 1.32 16 35 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 38 H 0.13 1.71 6.56 -52.49 -0.34 1.37 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -31.05 354.26 -11.84 -42.89 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -3.41 Total: 6.52 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -7.93 Total: -9.34 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.69 Total: -55.32 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.05 -11.84 -42.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039247014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.532 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds