Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48499 * 109.47490 * 240.00138 * 3 2 1 5 5 H 1.48501 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47134 * 120.00219 * 3 2 1 7 7 C 1.40312 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00629 * 180.02562 * 7 2 1 9 9 C 1.39983 * 119.99311 * 359.97438 * 7 2 1 10 10 N 1.33287 * 126.82907 * 0.02978 * 9 7 2 11 11 N 1.28741 * 109.53229 * 180.92411 * 10 9 7 12 12 C 1.31107 * 110.09241 * 0.37723 * 11 10 9 13 13 N 1.35391 * 107.83952 * 358.44541 * 12 11 10 14 14 C 1.39244 * 126.10253 * 183.81489 * 13 12 11 15 15 C 1.39225 * 118.27595 * 142.30820 * 14 13 12 16 16 C 1.37863 * 120.48666 * 182.63814 * 15 14 13 17 17 C 1.38620 * 120.00430 * 359.73487 * 16 15 14 18 18 Cl 1.73603 * 119.89969 * 179.26885 * 17 16 15 19 19 C 1.37682 * 120.20293 * 359.25817 * 17 16 15 20 20 C 1.39716 * 121.87669 * 323.55113 * 14 13 12 21 21 C 1.46702 * 122.99103 * 355.72726 * 20 14 13 22 22 C 1.48146 * 116.05722 * 221.70316 * 21 20 14 23 23 C 1.39469 * 120.12997 * 204.98049 * 22 21 20 24 24 C 1.37983 * 119.85957 * 179.72071 * 23 22 21 25 25 C 1.38348 * 120.13806 * 0.55027 * 24 23 22 26 26 C 1.38353 * 120.26306 * 359.72220 * 25 24 23 27 27 C 1.37975 * 120.13713 * 0.02562 * 26 25 24 28 28 N 1.28807 * 127.88420 * 41.67588 * 21 20 14 29 29 C 1.46664 * 121.92604 * 1.16484 * 28 21 20 30 30 H 0.96999 * 119.99975 * 0.02562 * 1 2 3 31 31 H 1.08002 * 119.75663 * 2.62439 * 15 14 13 32 32 H 1.08008 * 120.00088 * 179.74455 * 16 15 14 33 33 H 1.07996 * 119.72982 * 180.85850 * 19 17 16 34 34 H 1.07999 * 120.07350 * 359.97213 * 23 22 21 35 35 H 1.08009 * 119.93114 * 180.25152 * 24 23 22 36 36 H 1.07996 * 119.86632 * 179.69967 * 25 24 23 37 37 H 1.08004 * 119.92863 * 179.97438 * 26 25 24 38 38 H 1.08000 * 120.06734 * 180.02562 * 27 26 25 39 39 H 1.09002 * 109.79371 * 58.53298 * 29 28 21 40 40 H 1.08997 * 109.79806 * 179.38992 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6178 0.0000 4 1 3.0942 1.6965 -1.2125 5 1 1.2755 2.7465 0.0006 6 1 3.0943 1.6964 1.2125 7 6 2.0082 -1.2151 -0.0005 8 1 3.0881 -1.2151 -0.0001 9 6 1.3082 -2.4273 -0.0005 10 7 -0.0152 -2.5858 -0.0006 11 7 -0.2984 -3.8415 0.0190 12 6 0.8036 -4.5514 0.0407 13 7 1.8504 -3.6938 -0.0005 14 6 3.1962 -4.0444 -0.0698 15 6 4.0419 -3.2632 -0.8527 16 6 5.3708 -3.6002 -0.9972 17 6 5.8754 -4.7209 -0.3562 18 17 7.5449 -5.1535 -0.5553 19 6 5.0568 -5.4920 0.4381 20 6 3.7029 -5.1617 0.5988 21 6 2.8900 -5.9949 1.4917 22 6 3.5434 -6.4326 2.7473 23 6 3.1129 -7.5912 3.3934 24 6 3.7292 -7.9968 4.5594 25 6 4.7645 -7.2507 5.0938 26 6 5.1921 -6.0974 4.4603 27 6 4.5872 -5.6844 3.2911 28 7 1.6772 -6.3917 1.3169 29 6 0.9172 -6.0542 0.1087 30 1 -0.4850 0.8400 -0.0004 31 1 3.6539 -2.3869 -1.3506 32 1 6.0189 -2.9909 -1.6097 33 1 5.4612 -6.3556 0.9450 34 1 2.3017 -8.1719 2.9799 35 1 3.3995 -8.8961 5.0586 36 1 5.2406 -7.5697 6.0092 37 1 6.0005 -5.5189 4.8825 38 1 4.9221 -4.7841 2.7973 39 1 1.4409 -6.4251 -0.7724 40 1 -0.0770 -6.4976 0.1621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039247014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = 128.010257 kcal Electronic energy + Delta-G solvation = -29533.580835 eV Core-core repulsion = 25532.528788 eV Total energy + Delta-G solvation = -4001.052046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 364.079 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.44355 -41.02401 -39.74735 -37.98164 -37.33022 -35.78377 -35.36697 -33.51844 -32.33455 -31.54109 -31.04164 -30.60696 -28.82062 -27.01660 -25.43205 -24.46030 -23.44343 -23.28286 -22.41861 -21.48073 -20.66408 -19.37524 -18.36830 -18.17551 -17.55417 -17.05951 -16.86278 -16.55368 -16.15413 -15.90654 -15.52680 -15.44962 -15.30945 -14.88584 -14.82901 -14.59450 -14.21002 -13.91543 -13.78193 -13.70588 -13.39323 -13.18300 -12.99553 -12.81354 -12.69541 -12.15986 -12.11255 -12.01858 -11.96093 -11.94170 -11.82523 -11.45097 -11.37077 -10.90850 -10.53960 -10.14990 -9.82674 -9.80715 -9.54646 -9.40876 -8.67968 -6.79795 -0.54545 -0.16125 0.09210 0.52624 0.99395 1.15285 1.34622 1.37869 1.53995 1.57085 1.88251 2.19034 2.30175 2.37494 2.88429 3.04147 3.17142 3.21513 3.55368 3.60411 3.88066 3.93757 4.05615 4.12226 4.13701 4.19104 4.27800 4.35969 4.46299 4.61124 4.63360 4.69597 4.73886 4.75456 4.95291 4.97903 5.01721 5.11410 5.17934 5.18462 5.43189 5.52521 5.58161 5.59909 5.61694 5.99393 6.07278 6.08762 6.56014 6.58595 6.78996 8.26903 8.48900 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.008460 B = 0.004141 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.993179 B = 6759.518251 C = 8176.556792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.029 3.971 3 Si 1.004 2.996 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.453 4.453 8 H 0.113 0.887 9 C 0.317 3.683 10 N -0.396 5.396 11 N -0.315 5.315 12 C 0.051 3.949 13 N -0.476 5.476 14 C 0.172 3.828 15 C -0.137 4.137 16 C -0.053 4.053 17 C -0.051 4.051 18 Cl -0.044 7.044 19 C -0.042 4.042 20 C -0.126 4.126 21 C 0.257 3.743 22 C -0.084 4.084 23 C -0.085 4.085 24 C -0.128 4.128 25 C -0.100 4.100 26 C -0.124 4.124 27 C -0.101 4.101 28 N -0.509 5.509 29 C 0.150 3.850 30 H 0.290 0.710 31 H 0.141 0.859 32 H 0.174 0.826 33 H 0.161 0.839 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.119 0.881 39 H 0.085 0.915 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.283 -10.351 4.517 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.194 4.194 3 Si 0.821 3.179 4 H -0.167 1.167 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.131 0.869 9 C 0.077 3.923 10 N -0.242 5.242 11 N -0.153 5.153 12 C -0.215 4.215 13 N -0.170 5.170 14 C 0.074 3.926 15 C -0.157 4.157 16 C -0.073 4.073 17 C -0.079 4.079 18 Cl -0.015 7.015 19 C -0.062 4.062 20 C -0.132 4.132 21 C 0.069 3.931 22 C -0.085 4.085 23 C -0.104 4.104 24 C -0.145 4.145 25 C -0.118 4.118 26 C -0.142 4.142 27 C -0.121 4.121 28 N -0.216 5.216 29 C 0.019 3.981 30 H 0.100 0.900 31 H 0.159 0.841 32 H 0.191 0.809 33 H 0.178 0.822 34 H 0.144 0.856 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.137 0.863 39 H 0.103 0.897 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.692 -10.457 4.795 20.272 hybrid contribution 0.927 1.100 -0.886 1.690 sum 17.619 -9.357 3.909 20.329 Atomic orbital electron populations 1.70061 1.09603 1.30833 1.29309 1.27113 0.95675 1.04856 0.91719 0.84938 0.78382 0.73657 0.80904 1.16668 1.19412 1.17740 1.18969 0.95314 0.87030 1.47900 0.86914 1.22191 0.89640 0.84747 0.95688 1.75667 1.10163 1.05130 1.33257 1.73873 1.24988 1.00760 1.15692 1.24899 0.84673 0.95511 1.16415 1.43553 1.04783 1.07194 1.61493 1.18086 0.82378 0.95925 0.96185 1.21339 0.94062 1.01467 0.98873 1.21258 0.93603 0.95071 0.97359 1.20661 0.87170 0.97755 1.02276 1.98374 1.14091 1.92626 1.96446 1.21178 0.89361 0.99401 0.96291 1.19026 0.95473 0.97873 1.00840 1.21153 0.89438 0.89902 0.92624 1.18871 0.97819 0.97782 0.94029 1.21415 0.98374 0.95205 0.95447 1.21453 0.96626 1.01166 0.95305 1.21693 0.95999 0.94028 1.00089 1.21384 1.00697 0.97560 0.94573 1.21426 0.94818 0.98961 0.96910 1.71858 1.06150 1.22574 1.21031 1.20612 1.01458 0.83685 0.92335 0.89958 0.84102 0.80902 0.82181 0.85590 0.83192 0.82633 0.83211 0.86292 0.89718 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -42.89 11.96 21.89 0.26 -42.62 16 2 C 0.03 1.44 5.50 85.37 0.47 1.91 16 3 Si 1.00 35.77 29.56 68.60 2.03 37.80 16 4 H -0.24 -7.91 7.11 99.48 0.71 -7.20 16 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 6 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 7 C -0.45 -23.50 8.14 23.20 0.19 -23.31 16 8 H 0.11 5.13 5.85 -2.91 -0.02 5.11 16 9 C 0.32 18.09 7.32 133.42 0.98 19.06 16 10 N -0.40 -25.12 10.55 -55.15 -0.58 -25.70 16 11 N -0.31 -18.69 12.22 -49.80 -0.61 -19.29 16 12 C 0.05 2.61 7.40 137.89 1.02 3.63 16 13 N -0.48 -23.78 2.89 -334.32 -0.96 -24.74 16 14 C 0.17 6.84 6.14 38.56 0.24 7.08 16 15 C -0.14 -4.62 8.40 22.42 0.19 -4.43 16 16 C -0.05 -1.30 9.82 22.27 0.22 -1.09 16 17 C -0.05 -1.16 6.30 22.23 0.14 -1.02 16 18 Cl -0.04 -0.81 28.95 -2.72 -0.08 -0.89 16 19 C -0.04 -1.05 7.48 22.64 0.17 -0.88 16 20 C -0.13 -4.21 4.71 -20.21 -0.10 -4.31 16 21 C 0.26 8.93 6.23 44.43 0.28 9.20 16 22 C -0.08 -2.42 5.20 -20.05 -0.10 -2.52 16 23 C -0.08 -2.12 9.48 22.51 0.21 -1.91 16 24 C -0.13 -2.36 10.03 22.24 0.22 -2.14 16 25 C -0.10 -1.59 10.04 22.32 0.22 -1.37 16 26 C -0.12 -2.30 10.03 22.23 0.22 -2.08 16 27 C -0.10 -2.50 8.18 22.50 0.18 -2.32 16 28 N -0.51 -19.38 9.50 -334.57 -3.18 -22.56 16 29 C 0.15 6.02 6.88 85.65 0.59 6.61 16 30 H 0.29 14.43 8.29 -92.71 -0.77 13.66 16 31 H 0.14 5.16 6.08 -2.91 -0.02 5.14 16 32 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.16 3.39 7.10 -2.91 -0.02 3.37 16 34 H 0.13 3.24 7.63 -2.91 -0.02 3.22 16 35 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.12 3.04 6.56 -2.91 -0.02 3.02 16 39 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.12 4.60 8.14 -2.39 -0.02 4.58 16 Total: -1.00 -75.53 354.26 3.34 -72.18 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 1.12 Total: 25.70 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 5.34 Total: 0.13 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.07 Total: -134.92 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -75.53 3.34 -72.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039247014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.193 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds