Wall clock time and date at job start Tue Mar 31 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30844 * 125.89419 * 2 1 4 4 N 1.40083 * 108.20198 * 179.97438 * 3 2 1 5 5 C 1.46504 * 126.03812 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.46848 * 90.02225 * 5 4 3 7 7 H 1.08002 * 120.00148 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99807 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00063 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99956 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47046 * 90.00087 * 10 8 6 12 12 H 1.48494 * 109.47311 * 210.00048 * 10 8 6 13 13 H 1.48501 * 109.47132 * 330.00417 * 10 8 6 14 14 C 1.34951 * 107.92726 * 359.97438 * 4 3 2 15 15 C 1.50702 * 126.12865 * 179.97438 * 14 4 3 16 16 C 1.35320 * 107.74569 * 0.02562 * 14 4 3 17 17 C 1.50697 * 126.04023 * 180.02562 * 16 14 4 18 18 C 1.52997 * 109.46925 * 270.00016 * 17 16 14 19 19 C 1.50707 * 109.46923 * 180.02562 * 18 17 16 20 20 O 1.21281 * 120.00190 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00008 * 179.97438 * 19 18 17 22 22 C 1.46498 * 120.00123 * 179.97438 * 21 19 18 23 23 H 1.08994 * 109.62828 * 325.39381 * 22 21 19 24 24 C 1.53063 * 109.63211 * 204.99870 * 22 21 19 25 25 C 1.51792 * 110.73993 * 155.38299 * 24 22 21 26 26 C 1.51775 * 113.81357 * 66.80958 * 25 24 22 27 27 C 1.52980 * 110.88070 * 292.99477 * 26 25 24 28 28 N 1.47200 * 108.66541 * 86.46870 * 27 26 25 29 29 C 1.33376 * 120.42120 * 288.03597 * 28 27 26 30 30 O 1.21285 * 119.88635 * 180.28186 * 29 28 27 31 31 H 1.09001 * 109.47171 * 90.02700 * 1 2 3 32 32 H 1.09000 * 109.47391 * 210.02261 * 1 2 3 33 33 H 1.09000 * 109.47782 * 330.02806 * 1 2 3 34 34 H 1.08994 * 109.47314 * 210.02353 * 5 4 3 35 35 H 1.08998 * 109.46715 * 330.02835 * 5 4 3 36 36 H 0.97001 * 120.00462 * 179.97438 * 9 8 6 37 37 H 1.08994 * 109.47435 * 270.05935 * 15 14 4 38 38 H 1.09007 * 109.46847 * 30.05958 * 15 14 4 39 39 H 1.08997 * 109.46886 * 150.05639 * 15 14 4 40 40 H 1.09007 * 109.46911 * 29.99328 * 17 16 14 41 41 H 1.08997 * 109.47417 * 149.99511 * 17 16 14 42 42 H 1.08998 * 109.46983 * 299.99520 * 18 17 16 43 43 H 1.08991 * 109.47766 * 59.99880 * 18 17 16 44 44 H 0.97003 * 119.99654 * 359.97438 * 21 19 18 45 45 H 1.08998 * 109.22657 * 275.70744 * 24 22 21 46 46 H 1.09003 * 109.21954 * 35.10082 * 24 22 21 47 47 H 1.09003 * 108.61571 * 187.92962 * 25 24 22 48 48 H 1.09002 * 108.61514 * 305.82736 * 25 24 22 49 49 H 1.09000 * 109.19283 * 53.35661 * 26 25 24 50 50 H 1.08999 * 109.19714 * 172.67707 * 26 25 24 51 51 H 1.09001 * 109.61009 * 206.21674 * 27 26 25 52 52 H 1.08999 * 109.61100 * 326.54784 * 27 26 25 53 53 H 0.96994 * 119.78678 * 108.03810 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0600 0.0000 4 7 3.6087 0.6343 0.0006 5 6 4.7898 1.5009 0.0003 6 6 5.1948 1.7986 1.4210 7 1 4.6292 1.3834 2.2420 8 6 6.2874 2.6011 1.6726 9 7 6.9758 3.1071 0.6729 10 14 6.7898 2.9695 3.4337 11 1 7.7518 1.9387 3.8999 12 1 7.4297 4.3080 3.4962 13 1 5.5874 2.9544 4.3050 14 6 3.6142 -0.7152 0.0015 15 6 4.8351 -1.5988 0.0019 16 6 2.3271 -1.1330 0.0009 17 6 1.8599 -2.5657 0.0022 18 6 1.7030 -3.0521 -1.4399 19 6 1.2352 -4.4848 -1.4387 20 8 1.0464 -5.0602 -0.3879 21 7 1.0267 -5.1265 -2.6053 22 6 0.5725 -6.5193 -2.6042 23 1 1.0130 -7.0474 -1.7586 24 6 0.9927 -7.1984 -3.9100 25 6 1.0985 -8.7012 -3.7246 26 6 -0.2316 -9.3805 -3.4544 27 6 -0.7931 -8.9587 -2.0953 28 7 -1.5629 -7.7161 -2.2686 29 6 -0.9379 -6.5618 -2.5051 30 8 -1.5815 -5.5429 -2.6413 31 1 -0.3633 -0.0005 -1.0277 32 1 -0.3634 -0.8898 0.5142 33 1 -0.3635 0.8902 0.5134 34 1 5.6092 0.9982 -0.5134 35 1 4.5562 2.4332 -0.5138 36 1 7.7443 3.6720 0.8499 37 1 5.1298 -1.8117 -1.0256 38 1 5.6510 -1.0908 0.5161 39 1 4.6074 -2.5328 0.5155 40 1 2.5931 -3.1865 0.5172 41 1 0.9008 -2.6347 0.5153 42 1 0.9699 -2.4314 -1.9550 43 1 2.6621 -2.9832 -1.9531 44 1 1.1773 -4.6662 -3.4458 45 1 0.2526 -6.9831 -4.6808 46 1 1.9607 -6.8069 -4.2227 47 1 1.5330 -9.1333 -4.6260 48 1 1.7662 -8.9022 -2.8868 49 1 -0.9399 -9.1052 -4.2358 50 1 -0.0905 -10.4612 -3.4634 51 1 -1.4455 -9.7422 -1.7099 52 1 0.0268 -8.7894 -1.3973 53 1 -2.5309 -7.7369 -2.2105 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040521869.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:28 Heat of formation + Delta-G solvation = -53.028652 kcal Electronic energy + Delta-G solvation = -32545.386314 eV Core-core repulsion = 28223.276509 eV Total energy + Delta-G solvation = -4322.109805 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16352 -41.68252 -40.14102 -37.73659 -36.21524 -35.99791 -34.84861 -34.18969 -33.95333 -31.94890 -31.00382 -30.45476 -28.27597 -27.62456 -26.99752 -25.19187 -25.04535 -23.83513 -22.01255 -21.13838 -20.65900 -20.30941 -20.11548 -18.82192 -18.43296 -18.16883 -17.96297 -17.24378 -16.80223 -16.37986 -16.20505 -16.07144 -15.85946 -15.19866 -15.06103 -14.92318 -14.79131 -14.58904 -14.42817 -14.33939 -14.04039 -13.99465 -13.90683 -13.53072 -13.38314 -13.27958 -13.22954 -13.16497 -12.85546 -12.75758 -12.62378 -12.60852 -12.56335 -12.22125 -12.08354 -11.85780 -11.71896 -11.70162 -11.57403 -11.26562 -11.17221 -10.89434 -10.74990 -10.15526 -10.01045 -9.83038 -9.03308 -8.34994 -6.52651 1.17565 1.35220 1.36532 1.47990 1.54329 1.64807 1.86190 1.94842 2.13793 2.33084 2.49850 2.94276 3.45843 3.68488 3.77638 3.85001 3.92377 3.96230 4.05080 4.19623 4.22095 4.27423 4.32312 4.39169 4.48015 4.62010 4.64630 4.68661 4.72938 4.75823 4.79439 4.81940 4.84332 4.86738 4.97911 5.00519 5.02913 5.07614 5.14094 5.18190 5.23223 5.28827 5.38145 5.44344 5.45216 5.49964 5.56004 5.80379 5.88045 6.03747 6.22607 6.32665 6.50413 6.62775 7.11173 7.18653 7.19191 7.26181 8.70988 Molecular weight = 362.21amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.001772 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.663033 B =15798.795774 C =16376.035723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.052 3.948 3 N -0.350 5.350 4 N -0.354 5.354 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.046 0.954 8 C 0.022 3.978 9 N -0.917 5.917 10 Si 0.971 3.029 11 H -0.263 1.263 12 H -0.273 1.273 13 H -0.278 1.278 14 C 0.081 3.919 15 C -0.086 4.086 16 C -0.259 4.259 17 C -0.002 4.002 18 C -0.124 4.124 19 C 0.522 3.478 20 O -0.579 6.579 21 N -0.706 5.706 22 C 0.129 3.871 23 H 0.110 0.890 24 C -0.115 4.115 25 C -0.121 4.121 26 C -0.139 4.139 27 C 0.096 3.904 28 N -0.716 5.716 29 C 0.497 3.503 30 O -0.592 6.592 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.019 0.981 36 H 0.274 0.726 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.112 0.888 44 H 0.417 0.583 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.088 0.912 48 H 0.074 0.926 49 H 0.065 0.935 50 H 0.102 0.898 51 H 0.114 0.886 52 H 0.077 0.923 53 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -30.931 -12.099 35.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.174 5.174 4 N -0.135 5.135 5 C 0.156 3.844 6 C -0.592 4.592 7 H 0.064 0.936 8 C -0.179 4.179 9 N -0.555 5.555 10 Si 0.795 3.205 11 H -0.187 1.187 12 H -0.198 1.198 13 H -0.203 1.203 14 C -0.049 4.049 15 C -0.144 4.144 16 C -0.270 4.270 17 C -0.041 4.041 18 C -0.164 4.164 19 C 0.311 3.689 20 O -0.458 6.458 21 N -0.357 5.357 22 C 0.020 3.980 23 H 0.128 0.872 24 C -0.153 4.153 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.027 4.027 28 N -0.367 5.367 29 C 0.283 3.717 30 O -0.472 6.472 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.130 0.870 44 H 0.254 0.746 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.107 0.893 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.120 0.880 51 H 0.132 0.868 52 H 0.095 0.905 53 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -11.690 -29.313 -11.502 33.589 hybrid contribution -0.087 0.422 0.566 0.711 sum -11.777 -28.891 -10.936 33.060 Atomic orbital electron populations 1.20181 0.85103 1.03291 1.03570 1.22726 0.97949 0.90399 1.00158 1.77207 0.87924 1.24891 1.27332 1.49014 1.05246 1.05187 1.54013 1.19138 0.78971 0.88773 0.97520 1.21427 1.13435 1.32463 0.91827 0.93582 1.25740 0.95450 0.94432 1.02263 1.69997 1.19378 1.33208 1.32953 0.85366 0.78314 0.78292 0.78578 1.18734 1.19769 1.20319 1.21471 0.98142 0.84670 1.00590 1.20496 0.92173 0.97743 1.04027 1.19692 0.90493 0.96372 1.20469 1.19342 1.01077 0.88582 0.95128 1.21612 1.04318 0.90820 0.99612 1.21081 0.75429 0.89252 0.83159 1.90661 1.53318 1.69164 1.32658 1.45691 1.67684 1.13002 1.09360 1.21185 0.89765 0.84234 1.02844 0.87224 1.21578 1.03589 0.96896 0.93226 1.21159 0.98176 0.92437 1.04136 1.21841 0.97034 1.02339 0.96520 1.22147 0.97223 0.85074 0.98220 1.45995 1.10967 1.08434 1.71306 1.21441 0.92170 0.83214 0.74922 1.90725 1.68794 1.35196 1.52511 0.89393 0.89444 0.91563 0.93324 0.96314 0.91715 0.88653 0.92231 0.88156 0.91254 0.91843 0.88169 0.87016 0.74607 0.91259 0.88154 0.89317 0.90730 0.91639 0.87964 0.86798 0.90487 0.76041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.88 10.26 71.23 0.73 -1.15 16 2 C 0.05 2.07 7.22 43.10 0.31 2.38 16 3 N -0.35 -17.01 12.58 -47.39 -0.60 -17.61 16 4 N -0.35 -17.38 3.60 -338.40 -1.22 -18.60 16 5 C 0.28 14.95 5.82 85.63 0.50 15.45 16 6 C -0.55 -31.93 9.39 25.60 0.24 -31.69 16 7 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 8 C 0.02 1.24 5.46 84.66 0.46 1.70 16 9 N -0.92 -52.70 13.29 21.45 0.28 -52.42 16 10 Si 0.97 44.09 29.54 68.60 2.03 46.12 16 11 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 C 0.08 3.28 6.93 41.41 0.29 3.56 16 15 C -0.09 -2.78 9.68 71.24 0.69 -2.09 16 16 C -0.26 -9.39 5.35 -20.14 -0.11 -9.50 16 17 C 0.00 -0.07 4.59 29.85 0.14 0.07 16 18 C -0.12 -2.82 5.68 29.85 0.17 -2.65 16 19 C 0.52 12.64 7.80 87.66 0.68 13.33 16 20 O -0.58 -18.21 15.64 -3.03 -0.05 -18.25 16 21 N -0.71 -12.62 4.58 -444.90 -2.04 -14.66 16 22 C 0.13 1.99 2.15 44.50 0.10 2.09 16 23 H 0.11 1.79 6.22 -2.39 -0.01 1.77 16 24 C -0.11 -0.88 5.19 30.22 0.16 -0.72 16 25 C -0.12 -0.42 5.28 29.79 0.16 -0.27 16 26 C -0.14 -0.37 5.73 30.18 0.17 -0.19 16 27 C 0.10 0.50 6.46 86.24 0.56 1.05 16 28 N -0.72 -9.17 5.27 -462.60 -2.44 -11.61 16 29 C 0.50 10.15 6.98 88.10 0.61 10.77 16 30 O -0.59 -17.79 17.31 -3.05 -0.05 -17.85 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.09 2.29 7.25 -2.39 -0.02 2.27 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 2.60 7.66 -2.39 -0.02 2.58 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.09 2.53 8.14 -2.39 -0.02 2.52 16 38 H 0.06 2.19 7.72 -2.38 -0.02 2.17 16 39 H 0.10 2.67 7.15 -2.39 -0.02 2.66 16 40 H 0.07 2.00 7.10 -2.38 -0.02 1.98 16 41 H 0.06 1.92 7.21 -2.39 -0.02 1.90 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.42 5.37 8.61 -92.71 -0.80 4.57 16 45 H 0.07 0.61 7.86 -2.39 -0.02 0.59 16 46 H 0.10 0.53 8.08 -2.39 -0.02 0.51 16 47 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.07 0.23 7.87 -2.39 -0.02 0.21 16 49 H 0.06 0.30 8.05 -2.39 -0.02 0.28 16 50 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 51 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 52 H 0.08 0.48 6.73 -2.39 -0.02 0.46 16 53 H 0.40 4.69 8.91 -92.71 -0.83 3.86 16 Total: -1.00 -83.16 428.91 1.09 -82.07 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.68 Total: 20.67 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.86 Total: 2.14 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -6.00 Total: -114.89 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.10 Total: -36.10 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -83.16 1.09 -82.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040521869.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.038 kcal (2) G-P(sol) polarization free energy of solvation -83.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds