Wall clock time and date at job start Tue Mar 31 2020 05:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30840 * 125.90046 * 2 1 4 4 N 1.40082 * 108.20627 * 180.26282 * 3 2 1 5 5 C 1.46499 * 126.03755 * 179.74343 * 4 3 2 6 6 C 1.50705 * 109.46599 * 269.96755 * 5 4 3 7 7 H 1.07998 * 120.00392 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99802 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00198 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99960 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47369 * 89.99205 * 10 8 6 12 12 H 1.48496 * 109.47140 * 209.99431 * 10 8 6 13 13 H 1.48500 * 109.47002 * 329.99446 * 10 8 6 14 14 C 1.34952 * 107.92559 * 359.71742 * 4 3 2 15 15 C 1.50695 * 126.12794 * 179.97438 * 14 4 3 16 16 C 1.35322 * 107.74442 * 0.02562 * 14 4 3 17 17 C 1.50697 * 126.03675 * 180.02562 * 16 14 4 18 18 C 1.53001 * 109.47598 * 89.99891 * 17 16 14 19 19 C 1.50699 * 109.47301 * 179.97438 * 18 17 16 20 20 O 1.21284 * 120.00033 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99919 * 179.97438 * 19 18 17 22 22 C 1.46496 * 120.00039 * 180.02562 * 21 19 18 23 23 H 1.09007 * 109.79349 * 42.88277 * 22 21 19 24 24 C 1.53057 * 109.63458 * 163.38281 * 22 21 19 25 25 C 1.51795 * 110.70998 * 34.76591 * 24 22 21 26 26 C 1.51777 * 113.80935 * 66.82717 * 25 24 22 27 27 C 1.52983 * 110.88593 * 293.00129 * 26 25 24 28 28 N 1.47189 * 108.66462 * 86.46434 * 27 26 25 29 29 C 1.33369 * 120.43161 * 288.03984 * 28 27 26 30 30 O 1.21277 * 119.89411 * 180.28614 * 29 28 27 31 31 H 1.09004 * 109.47005 * 270.20828 * 1 2 3 32 32 H 1.08997 * 109.47123 * 30.20685 * 1 2 3 33 33 H 1.09002 * 109.47278 * 150.21226 * 1 2 3 34 34 H 1.08995 * 109.47124 * 29.97199 * 5 4 3 35 35 H 1.09000 * 109.46980 * 149.97430 * 5 4 3 36 36 H 0.97000 * 120.00451 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.46753 * 270.02252 * 15 14 4 38 38 H 1.08995 * 109.47360 * 30.02533 * 15 14 4 39 39 H 1.08999 * 109.47063 * 150.02729 * 15 14 4 40 40 H 1.09003 * 109.47499 * 329.99184 * 17 16 14 41 41 H 1.09004 * 109.46896 * 209.99723 * 17 16 14 42 42 H 1.09009 * 109.46784 * 59.99664 * 18 17 16 43 43 H 1.08997 * 109.47084 * 300.00171 * 18 17 16 44 44 H 0.97000 * 120.00076 * 0.02562 * 21 19 18 45 45 H 1.09005 * 109.21855 * 274.46362 * 24 22 21 46 46 H 1.08997 * 109.22703 * 155.07072 * 24 22 21 47 47 H 1.08996 * 108.61401 * 187.95116 * 25 24 22 48 48 H 1.09003 * 108.61393 * 305.85209 * 25 24 22 49 49 H 1.08999 * 109.19111 * 53.36257 * 26 25 24 50 50 H 1.09001 * 109.19102 * 172.67750 * 26 25 24 51 51 H 1.08998 * 109.60311 * 206.22256 * 27 26 25 52 52 H 1.09003 * 109.60119 * 326.70977 * 27 26 25 53 53 H 0.96998 * 119.78566 * 108.02984 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6341 -0.0061 5 6 4.7899 1.5007 -0.0135 6 6 5.1880 1.7950 -1.4369 7 1 4.6181 1.3784 -2.2542 8 6 6.2794 2.5968 -1.6957 9 7 6.6272 2.8532 -2.9378 10 14 7.2649 3.3178 -0.2820 11 1 8.3545 2.3803 0.0907 12 1 7.8508 4.6170 -0.6990 13 1 6.3727 3.5293 0.8861 14 6 3.6142 -0.7154 -0.0034 15 6 4.8349 -1.5989 -0.0086 16 6 2.3271 -1.1330 0.0036 17 6 1.8599 -2.5658 0.0092 18 6 1.7084 -3.0472 1.4536 19 6 1.2407 -4.4798 1.4591 20 8 1.0470 -5.0585 0.4110 21 7 1.0376 -5.1178 2.6288 22 6 0.5834 -6.5106 2.6343 23 1 1.1287 -7.0796 1.8813 24 6 0.8227 -7.1242 4.0158 25 6 0.6193 -6.0878 5.1061 26 6 -0.8160 -5.6126 5.2396 27 6 -1.2460 -4.8217 4.0027 28 7 -1.7454 -5.7659 2.9900 29 6 -0.9007 -6.5642 2.3359 30 8 -1.3222 -7.3349 1.4997 31 1 -0.3633 0.0037 1.0277 32 1 -0.3633 0.8881 -0.5170 33 1 -0.3634 -0.8919 -0.5105 34 1 4.5588 2.4342 0.4996 35 1 5.6117 0.9991 0.4974 36 1 7.3953 3.4169 -3.1199 37 1 5.1236 -1.8137 -1.0375 38 1 5.6538 -1.0902 0.5000 39 1 4.6102 -2.5321 0.5080 40 1 2.5909 -3.1884 -0.5066 41 1 0.8987 -2.6365 -0.5000 42 1 0.9773 -2.4246 1.9693 43 1 2.6695 -2.9765 1.9628 44 1 1.1921 -4.6548 3.4671 45 1 1.8431 -7.5042 4.0678 46 1 0.1250 -7.9475 4.1687 47 1 0.9337 -6.5171 6.0573 48 1 1.2503 -5.2259 4.8889 49 1 -1.4699 -6.4766 5.3578 50 1 -0.9020 -4.9752 6.1197 51 1 -2.0373 -4.1224 4.2726 52 1 -0.3919 -4.2748 3.6032 53 1 -2.6951 -5.8080 2.7973 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040521871.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:32 Heat of formation + Delta-G solvation = -29.597355 kcal Electronic energy + Delta-G solvation = -33225.575084 eV Core-core repulsion = 28904.481336 eV Total energy + Delta-G solvation = -4321.093748 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 362.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.23752 -42.00824 -40.08568 -38.13697 -36.10391 -35.61080 -34.85053 -34.25413 -33.95722 -32.15946 -31.35584 -30.61881 -28.30878 -27.73732 -27.06834 -25.18540 -24.98187 -23.66074 -22.14218 -21.25870 -20.68384 -20.31329 -20.13673 -19.24904 -18.43015 -18.23971 -17.80510 -17.29969 -16.68703 -16.39558 -16.28403 -16.01084 -15.71721 -15.34696 -15.13088 -14.93446 -14.82613 -14.69162 -14.57212 -14.44159 -14.11845 -13.90965 -13.80928 -13.56815 -13.47810 -13.43012 -13.32186 -13.17705 -12.90962 -12.85571 -12.75757 -12.53895 -12.47709 -11.96292 -11.95299 -11.87311 -11.81728 -11.71199 -11.64120 -11.23219 -11.17417 -10.90887 -10.90008 -10.21818 -9.87824 -9.82877 -9.00494 -8.41994 -6.53411 1.14926 1.32597 1.35823 1.40750 1.46184 1.62020 1.88412 1.91738 2.25280 2.25450 2.36732 2.90273 3.45805 3.67972 3.74384 3.85269 3.89840 3.93061 3.96148 4.16668 4.21881 4.24686 4.33143 4.36834 4.45163 4.58377 4.60159 4.63528 4.65791 4.70138 4.74235 4.78270 4.84641 4.88874 4.91844 4.94808 5.04840 5.06745 5.12677 5.18591 5.22857 5.23337 5.27709 5.35790 5.42185 5.44415 5.51533 5.86116 5.92589 6.06860 6.22719 6.42232 6.46134 6.51766 7.07227 7.11292 7.18397 7.23634 8.74971 Molecular weight = 362.21amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.002000 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.867319 B =13998.693719 C =14229.036700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.057 3.943 3 N -0.347 5.347 4 N -0.355 5.355 5 C 0.242 3.758 6 C -0.551 4.551 7 H 0.019 0.981 8 C 0.018 3.982 9 N -0.939 5.939 10 Si 0.954 3.046 11 H -0.249 1.249 12 H -0.279 1.279 13 H -0.244 1.244 14 C 0.082 3.918 15 C -0.086 4.086 16 C -0.255 4.255 17 C -0.007 4.007 18 C -0.121 4.121 19 C 0.510 3.490 20 O -0.575 6.575 21 N -0.707 5.707 22 C 0.136 3.864 23 H 0.090 0.910 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.140 4.140 27 C 0.082 3.918 28 N -0.710 5.710 29 C 0.505 3.495 30 O -0.602 6.602 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.273 0.727 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.423 0.577 45 H 0.099 0.901 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.063 0.937 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.091 0.909 53 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 -17.865 26.611 34.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.170 5.170 4 N -0.135 5.135 5 C 0.121 3.879 6 C -0.589 4.589 7 H 0.037 0.963 8 C -0.182 4.182 9 N -0.578 5.578 10 Si 0.774 3.226 11 H -0.173 1.173 12 H -0.204 1.204 13 H -0.167 1.167 14 C -0.048 4.048 15 C -0.144 4.144 16 C -0.267 4.267 17 C -0.047 4.047 18 C -0.161 4.161 19 C 0.299 3.701 20 O -0.453 6.453 21 N -0.369 5.369 22 C 0.027 3.973 23 H 0.108 0.892 24 C -0.155 4.155 25 C -0.165 4.165 26 C -0.178 4.178 27 C -0.041 4.041 28 N -0.360 5.360 29 C 0.290 3.710 30 O -0.483 6.483 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.129 0.871 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.269 0.731 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.111 0.889 48 H 0.098 0.902 49 H 0.082 0.918 50 H 0.123 0.877 51 H 0.128 0.872 52 H 0.109 0.891 53 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -12.276 -17.147 25.409 33.020 hybrid contribution 0.168 -0.024 -0.625 0.648 sum -12.108 -17.170 24.784 32.491 Atomic orbital electron populations 1.20215 0.84762 1.03155 1.04068 1.22765 0.98102 0.90205 0.99778 1.77214 0.87655 1.24854 1.27279 1.48669 1.05150 1.05007 1.54631 1.19660 0.81037 0.90544 0.96614 1.21269 1.13726 1.32629 0.91282 0.96305 1.25906 0.97770 0.95361 0.99124 1.70044 1.27962 1.38220 1.21525 0.85636 0.79381 0.78673 0.78872 1.17268 1.20420 1.16690 1.21461 0.98244 0.84580 1.00478 1.20492 0.92427 0.98236 1.03262 1.19671 0.90446 0.96338 1.20251 1.19363 1.01028 0.88552 0.95715 1.21665 1.05061 0.90196 0.99185 1.21401 0.75742 0.89780 0.83213 1.90777 1.51924 1.69184 1.33457 1.46502 1.68460 1.12356 1.09592 1.21249 0.89432 0.84878 1.01781 0.89189 1.21599 1.04649 0.99289 0.89950 1.21216 0.97238 0.98911 0.99104 1.21856 0.96523 1.01096 0.98347 1.22503 1.02524 0.91520 0.87523 1.45955 1.10472 1.38996 1.40580 1.21322 0.90796 0.79454 0.79455 1.90735 1.80014 1.41954 1.35582 0.88296 0.91957 0.89568 0.93684 0.91294 0.91757 0.91470 0.90735 0.87099 0.92157 0.91767 0.86389 0.86556 0.73108 0.88205 0.90679 0.88855 0.90172 0.91798 0.87668 0.87169 0.89143 0.76320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.59 10.26 71.24 0.73 -0.86 16 2 C 0.06 2.00 7.22 43.10 0.31 2.31 16 3 N -0.35 -15.43 12.58 -47.39 -0.60 -16.02 16 4 N -0.35 -15.89 3.60 -338.40 -1.22 -17.10 16 5 C 0.24 11.42 5.07 85.63 0.43 11.86 16 6 C -0.55 -31.93 9.94 25.60 0.25 -31.67 16 7 H 0.02 1.27 8.06 -2.91 -0.02 1.25 16 8 C 0.02 1.01 5.47 84.66 0.46 1.47 16 9 N -0.94 -57.76 13.96 21.45 0.30 -57.46 16 10 Si 0.95 40.72 27.47 68.60 1.88 42.60 16 11 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 12 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 13 H -0.24 -9.54 6.54 99.48 0.65 -8.89 16 14 C 0.08 3.02 6.93 41.40 0.29 3.31 16 15 C -0.09 -2.54 9.72 71.23 0.69 -1.85 16 16 C -0.26 -8.33 5.35 -20.14 -0.11 -8.44 16 17 C -0.01 -0.19 4.41 29.85 0.13 -0.06 16 18 C -0.12 -1.98 5.68 29.85 0.17 -1.81 16 19 C 0.51 9.88 7.69 87.66 0.67 10.56 16 20 O -0.58 -17.79 15.68 -3.04 -0.05 -17.84 16 21 N -0.71 -8.18 3.09 -444.83 -1.38 -9.56 16 22 C 0.14 2.10 2.68 44.51 0.12 2.22 16 23 H 0.09 1.94 7.84 -2.38 -0.02 1.92 16 24 C -0.12 -0.81 5.57 30.22 0.17 -0.65 16 25 C -0.13 -0.15 5.20 29.80 0.15 0.01 16 26 C -0.14 -0.18 5.73 30.19 0.17 0.00 16 27 C 0.08 0.35 6.43 86.24 0.55 0.90 16 28 N -0.71 -9.17 5.27 -462.57 -2.44 -11.60 16 29 C 0.50 10.76 6.53 88.12 0.58 11.33 16 30 O -0.60 -19.81 17.92 -3.02 -0.05 -19.86 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.09 1.88 7.25 -2.39 -0.02 1.87 16 34 H 0.05 2.14 7.20 -2.39 -0.02 2.12 16 35 H 0.07 2.86 6.48 -2.39 -0.02 2.84 16 36 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 2.11 7.08 -2.39 -0.02 2.09 16 39 H 0.11 2.34 7.77 -2.39 -0.02 2.32 16 40 H 0.06 1.68 7.73 -2.39 -0.02 1.66 16 41 H 0.06 1.74 7.21 -2.39 -0.02 1.73 16 42 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 43 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.42 1.65 4.35 -92.71 -0.40 1.25 16 45 H 0.10 0.46 8.14 -2.38 -0.02 0.44 16 46 H 0.07 0.65 7.86 -2.39 -0.02 0.64 16 47 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H 0.08 -0.12 5.70 -2.39 -0.01 -0.14 16 49 H 0.06 0.25 8.05 -2.39 -0.02 0.23 16 50 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 51 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 52 H 0.09 0.35 4.50 -2.39 -0.01 0.34 16 53 H 0.40 4.94 8.91 -92.71 -0.83 4.11 16 Total: -1.00 -91.80 417.78 1.91 -89.90 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.34 Total: 18.31 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.79 Total: -1.36 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -5.33 Total: -111.75 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.10 Total: -37.70 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.88 Total: 42.60 kcal Total: -91.80 1.91 -89.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040521871.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.301 kcal (2) G-P(sol) polarization free energy of solvation -91.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds