Wall clock time and date at job start Tue Mar 31 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99552 * 2 1 4 4 N 1.46500 * 109.46790 * 125.00494 * 3 2 1 5 5 C 1.38105 * 126.56658 * 93.17927 * 4 3 2 6 6 C 1.47718 * 126.68994 * 0.02562 * 5 4 3 7 7 C 1.39656 * 120.13788 * 338.20305 * 6 5 4 8 8 C 1.37922 * 119.85428 * 179.69697 * 7 6 5 9 9 C 1.38466 * 120.14301 * 0.59896 * 8 7 6 10 10 Br 1.89096 * 119.85987 * 179.69900 * 9 8 7 11 11 C 1.38468 * 120.28121 * 359.67396 * 9 8 7 12 12 C 1.37915 * 120.14492 * 0.02562 * 11 9 8 13 13 C 1.36261 * 106.62649 * 179.97438 * 5 4 3 14 14 N 1.33546 * 108.23837 * 0.02562 * 13 5 4 15 15 C 1.31556 * 109.61206 * 359.72066 * 14 13 5 16 16 S 1.76197 * 125.67233 * 180.27765 * 15 14 13 17 17 C 1.76205 * 100.00165 * 0.19822 * 16 15 14 18 18 H 1.08003 * 119.99424 * 0.02562 * 17 16 15 19 19 C 1.38588 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31674 * 120.00559 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99602 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47149 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47261 * 119.99582 * 21 19 17 24 24 H 1.48503 * 109.47089 * 239.99802 * 21 19 17 25 25 H 1.08004 * 119.99544 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99925 * 359.71856 * 1 2 3 27 27 H 1.07997 * 120.00504 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47021 * 245.00342 * 3 2 1 29 29 H 1.08991 * 109.47395 * 5.00557 * 3 2 1 30 30 H 1.07998 * 120.07333 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.92847 * 180.31580 * 8 7 6 32 32 H 1.08002 * 119.92502 * 180.02562 * 11 9 8 33 33 H 1.08002 * 120.07300 * 180.02562 * 12 11 9 34 34 H 1.07999 * 125.88067 * 180.02562 * 13 5 4 35 35 H 0.96996 * 120.00023 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3207 0.9495 1.1147 6 6 5.0765 0.4354 -0.0457 7 6 4.3999 -0.1308 -1.1282 8 6 5.1110 -0.6033 -2.2114 9 6 6.4936 -0.5284 -2.2217 10 35 7.4611 -1.1864 -3.7072 11 6 7.1708 0.0267 -1.1490 12 6 6.4711 0.5084 -0.0625 13 6 4.7973 1.1399 2.3770 14 7 3.8039 1.6173 3.1312 15 6 2.7170 1.7443 2.4010 16 16 1.1610 2.3439 2.9703 17 6 1.5572 2.6712 4.6557 18 1 2.5546 2.4793 5.0230 19 6 0.5891 3.1748 5.5100 20 7 -0.6268 3.4092 5.0621 21 14 1.0094 3.5223 7.2966 22 1 2.4318 3.1768 7.5467 23 1 0.7913 4.9626 7.5853 24 1 0.1391 2.7034 8.1782 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0046 27 1 1.8501 -0.9352 -0.0004 28 1 2.6212 1.4027 -0.9314 29 1 1.3586 2.1316 0.0897 30 1 3.3218 -0.1945 -1.1192 31 1 4.5886 -1.0368 -3.0514 32 1 8.2493 0.0826 -1.1632 33 1 7.0004 0.9416 0.7733 34 1 5.8048 0.9394 2.7101 35 1 -1.3042 3.7620 5.6599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044085271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:10 Heat of formation + Delta-G solvation = 103.338801 kcal Electronic energy + Delta-G solvation = -20869.972726 eV Core-core repulsion = 17620.741265 eV Total energy + Delta-G solvation = -3249.231461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.994 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.32419 -38.99865 -35.57553 -32.97679 -32.64992 -31.81585 -31.15753 -30.25544 -27.47121 -26.23379 -25.62632 -23.11410 -22.68279 -20.76122 -20.50298 -19.62783 -18.03285 -17.26360 -16.12969 -15.77141 -15.40667 -15.10549 -14.91925 -14.57415 -14.22171 -13.62291 -13.54912 -13.39653 -13.24827 -13.07995 -12.92937 -12.05992 -11.52294 -11.40359 -11.23072 -11.18734 -11.16729 -11.08950 -10.99463 -10.45005 -10.15809 -9.69796 -9.59131 -9.29518 -9.19438 -9.16593 -8.97690 -8.86174 -8.04278 -6.54259 -6.45316 -4.16533 0.72730 1.18189 1.48176 2.10081 2.48853 2.66648 3.17298 3.23557 3.33516 3.48170 3.56444 3.87426 4.02750 4.63074 4.67238 4.73401 4.82899 4.91910 4.98964 5.05988 5.17003 5.18430 5.23805 5.48233 5.57990 5.65819 5.76724 5.87526 5.96109 6.06046 6.07328 6.31945 6.55233 6.63367 6.66350 6.85614 7.21095 7.48278 7.60017 8.40568 8.64642 9.07638 10.63310 Molecular weight = 363.99amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002271 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.892705 B =12325.483022 C =13333.939680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.189 4.189 3 C 0.131 3.869 4 N -0.449 5.449 5 C -0.049 4.049 6 C 0.043 3.957 7 C -0.141 4.141 8 C -0.079 4.079 9 C -0.110 4.110 10 Br -0.063 7.063 11 C -0.079 4.079 12 C -0.112 4.112 13 C 0.029 3.971 14 N -0.496 5.496 15 C 0.223 3.777 16 S 0.121 5.879 17 C -0.525 4.525 18 H 0.106 0.894 19 C 0.072 3.928 20 N -0.880 5.880 21 Si 0.930 3.070 22 H -0.265 1.265 23 H -0.279 1.279 24 H -0.279 1.279 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.163 0.837 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.020 -8.434 -18.032 22.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.208 4.208 3 C 0.009 3.991 4 N -0.137 5.137 5 C -0.164 4.164 6 C 0.041 3.959 7 C -0.161 4.161 8 C -0.099 4.099 9 C -0.189 4.189 10 Br 0.022 6.978 11 C -0.099 4.099 12 C -0.132 4.132 13 C -0.126 4.126 14 N -0.217 5.217 15 C -0.143 4.143 16 S 0.357 5.643 17 C -0.673 4.673 18 H 0.124 0.876 19 C -0.136 4.136 20 N -0.516 5.516 21 Si 0.756 3.244 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.205 1.205 25 H 0.122 0.878 26 H 0.124 0.876 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.181 0.819 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.027 -8.208 -18.318 22.438 hybrid contribution 1.096 -0.119 1.150 1.593 sum 11.122 -8.327 -17.168 22.086 Atomic orbital electron populations 1.23973 0.95506 1.02685 0.96425 1.23054 0.96443 0.97813 1.03488 1.20995 0.92180 0.97473 0.88501 1.45369 1.08246 1.50832 1.09224 1.19296 0.85230 1.15748 0.96157 1.18067 0.92414 0.94358 0.91106 1.21620 1.00853 1.00144 0.93437 1.20955 0.91895 0.98492 0.98530 1.21716 0.94604 1.07607 0.95018 1.96672 1.74344 1.86599 1.40204 1.20965 1.00086 0.96759 0.92081 1.21116 0.92646 1.00851 0.98556 1.22384 0.98999 1.02000 0.89229 1.70741 0.98384 1.21425 1.31152 1.26942 1.03457 1.01970 0.81911 1.83370 0.96177 1.72717 1.12066 1.23236 1.02106 1.49262 0.92734 0.87627 1.25062 0.94220 0.94139 1.00206 1.69975 1.02579 1.42355 1.36659 0.85904 0.79163 0.78010 0.81329 1.18953 1.20457 1.20467 0.87850 0.87646 0.86947 0.88517 0.88306 0.84445 0.85192 0.84982 0.84659 0.81933 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 14.32 29.01 0.42 -1.35 16 2 C -0.19 -2.44 8.72 -36.03 -0.31 -2.76 16 3 C 0.13 1.86 5.51 -5.19 -0.03 1.83 16 4 N -0.45 -8.14 2.80 -113.98 -0.32 -8.46 16 5 C -0.05 -0.84 6.73 -81.88 -0.55 -1.39 16 6 C 0.04 0.59 5.84 -104.97 -0.61 -0.03 16 7 C -0.14 -1.70 8.56 -39.17 -0.34 -2.04 16 8 C -0.08 -0.85 9.77 -39.61 -0.39 -1.23 16 9 C -0.11 -1.18 6.23 -39.41 -0.25 -1.43 16 10 Br -0.06 -0.60 33.69 -68.01 -2.29 -2.90 16 11 C -0.08 -0.83 9.77 -39.61 -0.39 -1.22 16 12 C -0.11 -1.31 9.58 -39.17 -0.38 -1.69 16 13 C 0.03 0.54 11.26 -17.52 -0.20 0.35 16 14 N -0.50 -11.47 9.96 -13.08 -0.13 -11.60 16 15 C 0.22 4.99 7.95 -88.30 -0.70 4.29 16 16 S 0.12 2.96 21.27 -107.50 -2.29 0.68 16 17 C -0.52 -14.53 9.36 30.86 0.29 -14.24 16 18 H 0.11 3.02 6.88 -52.48 -0.36 2.66 16 19 C 0.07 1.96 5.49 -17.49 -0.10 1.86 16 20 N -0.88 -24.42 13.22 55.48 0.73 -23.69 16 21 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 25 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 26 H 0.11 1.24 7.84 -52.49 -0.41 0.83 16 27 H 0.11 1.42 7.40 -52.49 -0.39 1.03 16 28 H 0.10 1.16 5.99 -51.93 -0.31 0.85 16 29 H 0.10 1.42 7.48 -51.93 -0.39 1.03 16 30 H 0.14 1.56 3.72 -52.49 -0.20 1.37 16 31 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.40 7.45 -52.49 -0.39 1.01 16 34 H 0.16 2.48 7.72 -52.49 -0.41 2.08 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -30.39 337.86 -11.01 -41.40 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.25 Total: 2.42 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -3.53 Total: -19.05 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.28 Total: -43.75 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -2.29 Total: 0.68 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.39 -11.01 -41.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.741 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds