Wall clock time and date at job start Tue Mar 31 2020 06:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99552 * 2 1 4 4 N 1.46500 * 109.46790 * 125.00494 * 3 2 1 5 5 C 1.38105 * 126.56658 * 93.17927 * 4 3 2 6 6 C 1.47718 * 126.68994 * 0.02562 * 5 4 3 7 7 C 1.39656 * 120.13788 * 338.20305 * 6 5 4 8 8 C 1.37922 * 119.85428 * 179.69697 * 7 6 5 9 9 C 1.38466 * 120.14301 * 0.59896 * 8 7 6 10 10 Br 1.89096 * 119.85987 * 179.69900 * 9 8 7 11 11 C 1.38468 * 120.28121 * 359.67396 * 9 8 7 12 12 C 1.37915 * 120.14492 * 0.02562 * 11 9 8 13 13 C 1.36261 * 106.62649 * 179.97438 * 5 4 3 14 14 N 1.33546 * 108.23837 * 0.02562 * 13 5 4 15 15 C 1.31556 * 109.61206 * 359.72066 * 14 13 5 16 16 S 1.76197 * 125.67233 * 180.27765 * 15 14 13 17 17 C 1.76205 * 100.00165 * 0.19822 * 16 15 14 18 18 H 1.08003 * 119.99424 * 0.02562 * 17 16 15 19 19 C 1.38588 * 119.99858 * 180.02562 * 17 16 15 20 20 N 1.31674 * 120.00559 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99602 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47149 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47261 * 119.99582 * 21 19 17 24 24 H 1.48503 * 109.47089 * 239.99802 * 21 19 17 25 25 H 1.08004 * 119.99544 * 179.97438 * 1 2 3 26 26 H 1.07996 * 119.99925 * 359.71856 * 1 2 3 27 27 H 1.07997 * 120.00504 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47021 * 245.00342 * 3 2 1 29 29 H 1.08991 * 109.47395 * 5.00557 * 3 2 1 30 30 H 1.07998 * 120.07333 * 359.97438 * 7 6 5 31 31 H 1.08000 * 119.92847 * 180.31580 * 8 7 6 32 32 H 1.08002 * 119.92502 * 180.02562 * 11 9 8 33 33 H 1.08002 * 120.07300 * 180.02562 * 12 11 9 34 34 H 1.07999 * 125.88067 * 180.02562 * 13 5 4 35 35 H 0.96996 * 120.00023 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3207 0.9495 1.1147 6 6 5.0765 0.4354 -0.0457 7 6 4.3999 -0.1308 -1.1282 8 6 5.1110 -0.6033 -2.2114 9 6 6.4936 -0.5284 -2.2217 10 35 7.4611 -1.1864 -3.7072 11 6 7.1708 0.0267 -1.1490 12 6 6.4711 0.5084 -0.0625 13 6 4.7973 1.1399 2.3770 14 7 3.8039 1.6173 3.1312 15 6 2.7170 1.7443 2.4010 16 16 1.1610 2.3439 2.9703 17 6 1.5572 2.6712 4.6557 18 1 2.5546 2.4793 5.0230 19 6 0.5891 3.1748 5.5100 20 7 -0.6268 3.4092 5.0621 21 14 1.0094 3.5223 7.2966 22 1 2.4318 3.1768 7.5467 23 1 0.7913 4.9626 7.5853 24 1 0.1391 2.7034 8.1782 25 1 -0.5399 -0.9354 -0.0004 26 1 -0.5400 0.9353 0.0046 27 1 1.8501 -0.9352 -0.0004 28 1 2.6212 1.4027 -0.9314 29 1 1.3586 2.1316 0.0897 30 1 3.3218 -0.1945 -1.1192 31 1 4.5886 -1.0368 -3.0514 32 1 8.2493 0.0826 -1.1632 33 1 7.0004 0.9416 0.7733 34 1 5.8048 0.9394 2.7101 35 1 -1.3042 3.7620 5.6599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044085271.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:09 Heat of formation + Delta-G solvation = 88.753967 kcal Electronic energy + Delta-G solvation = -20870.605172 eV Core-core repulsion = 17620.741265 eV Total energy + Delta-G solvation = -3249.863907 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 363.994 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.76969 -39.97554 -36.76924 -34.68170 -34.00500 -33.04618 -32.09681 -31.28715 -28.74414 -27.64422 -27.46168 -24.11006 -23.80192 -22.17717 -21.69219 -20.80671 -19.76410 -18.57624 -17.28239 -16.94348 -16.88162 -16.57021 -16.33881 -15.84426 -15.43119 -14.90601 -14.75270 -14.55433 -14.40066 -14.30301 -14.13685 -13.24272 -13.14932 -12.97582 -12.91483 -12.44005 -12.43047 -12.15357 -12.06563 -11.95540 -11.33785 -11.24935 -10.99256 -10.84274 -10.70015 -10.48185 -10.30833 -10.07107 -9.44545 -8.46914 -8.25837 -6.20213 -0.30453 0.29355 0.62657 0.88592 1.09335 1.22611 1.38939 1.39488 1.55794 2.12302 2.13677 2.20567 2.72233 2.93549 3.13149 3.52354 3.69164 3.75802 3.85091 3.89544 4.10151 4.19630 4.26324 4.29914 4.51345 4.55360 4.67470 4.92064 4.94556 5.07949 5.16096 5.19770 5.50920 5.54903 5.57578 5.66401 5.72388 5.79403 6.07419 6.29328 7.01450 7.12459 8.62895 Molecular weight = 363.99amu Principal moments of inertia in cm(-1) A = 0.024579 B = 0.002271 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.892705 B =12325.483022 C =13333.939680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.200 4.200 3 C 0.123 3.877 4 N -0.439 5.439 5 C -0.015 4.015 6 C 0.011 3.989 7 C -0.135 4.135 8 C -0.080 4.080 9 C -0.106 4.106 10 Br -0.047 7.047 11 C -0.079 4.079 12 C -0.104 4.104 13 C -0.008 4.008 14 N -0.533 5.533 15 C 0.191 3.809 16 S 0.090 5.910 17 C -0.547 4.547 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.908 5.908 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.267 1.267 24 H -0.268 1.268 25 H 0.123 0.877 26 H 0.103 0.897 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.190 0.810 35 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -9.647 -19.997 25.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.219 4.219 3 C 0.003 3.997 4 N -0.125 5.125 5 C -0.131 4.131 6 C 0.009 3.991 7 C -0.155 4.155 8 C -0.100 4.100 9 C -0.185 4.185 10 Br 0.039 6.961 11 C -0.099 4.099 12 C -0.124 4.124 13 C -0.161 4.161 14 N -0.254 5.254 15 C -0.177 4.177 16 S 0.324 5.676 17 C -0.695 4.695 18 H 0.104 0.896 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.815 3.185 22 H -0.196 1.196 23 H -0.192 1.192 24 H -0.193 1.193 25 H 0.141 0.859 26 H 0.121 0.879 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.165 0.835 34 H 0.206 0.794 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.622 -9.442 -20.339 25.257 hybrid contribution 0.852 0.096 1.409 1.649 sum 12.474 -9.346 -18.930 24.521 Atomic orbital electron populations 1.24187 0.95349 1.03609 0.94626 1.22983 0.96717 0.97155 1.05047 1.21310 0.92097 0.98294 0.88028 1.45618 1.09174 1.48883 1.08780 1.19830 0.84502 1.12041 0.96736 1.18079 0.93127 0.97005 0.90861 1.21707 1.01271 0.99382 0.93101 1.21180 0.92041 0.98082 0.98662 1.22008 0.94974 1.06165 0.95395 1.96716 1.73906 1.86284 1.39208 1.21223 1.01269 0.96028 0.91384 1.21302 0.91865 0.99944 0.99277 1.22833 0.99624 1.03906 0.89764 1.70585 0.99633 1.22028 1.33179 1.26342 1.02584 1.05022 0.83710 1.82964 0.98718 1.75109 1.10815 1.23322 1.01520 1.49954 0.94736 0.89631 1.25900 0.94044 0.93777 1.04135 1.70044 1.03299 1.42998 1.38088 0.84977 0.78547 0.78431 0.76506 1.19553 1.19241 1.19272 0.85853 0.87854 0.86325 0.86024 0.88890 0.83934 0.83038 0.82695 0.83491 0.79354 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 14.32 67.78 0.97 -2.24 16 2 C -0.20 -4.99 8.72 25.64 0.22 -4.76 16 3 C 0.12 3.45 5.51 85.63 0.47 3.93 16 4 N -0.44 -16.00 2.80 -514.52 -1.44 -17.45 16 5 C -0.01 -0.49 6.73 40.20 0.27 -0.22 16 6 C 0.01 0.29 5.84 -20.09 -0.12 0.17 16 7 C -0.14 -2.90 8.56 22.54 0.19 -2.71 16 8 C -0.08 -1.44 9.77 22.25 0.22 -1.22 16 9 C -0.11 -1.90 6.23 22.38 0.14 -1.76 16 10 Br -0.05 -0.73 33.69 -20.37 -0.69 -1.42 16 11 C -0.08 -1.40 9.77 22.25 0.22 -1.18 16 12 C -0.10 -2.17 9.58 22.54 0.22 -1.95 16 13 C -0.01 -0.31 11.26 83.97 0.95 0.64 16 14 N -0.53 -25.55 9.96 -195.30 -1.95 -27.49 16 15 C 0.19 8.86 7.95 179.54 1.43 10.29 16 16 S 0.09 4.62 21.27 -56.49 -1.20 3.42 16 17 C -0.55 -31.66 9.36 67.90 0.64 -31.03 16 18 H 0.09 5.16 6.88 -2.91 -0.02 5.14 16 19 C 0.03 1.49 5.49 84.80 0.47 1.96 16 20 N -0.91 -51.63 13.22 21.61 0.29 -51.34 16 21 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 26 H 0.10 2.42 7.84 -2.91 -0.02 2.39 16 27 H 0.12 2.81 7.40 -2.91 -0.02 2.79 16 28 H 0.12 2.73 5.99 -2.39 -0.01 2.71 16 29 H 0.09 2.72 7.48 -2.39 -0.02 2.70 16 30 H 0.14 2.88 3.72 -2.91 -0.01 2.87 16 31 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.15 2.68 7.45 -2.91 -0.02 2.65 16 34 H 0.19 5.70 7.72 -2.91 -0.02 5.68 16 35 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -68.14 337.86 4.44 -63.70 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.13 Total: 14.41 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 6.28 Total: -30.09 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -3.10 Total: -96.28 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.20 Total: 3.42 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -0.69 Total: -1.42 kcal Total: -68.14 4.44 -63.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044085271.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.451 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds