Wall clock time and date at job start Tue Mar 31 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39285 * 125.82894 * 2 1 4 4 C 1.38669 * 133.31561 * 359.96580 * 3 2 1 5 5 C 1.38114 * 119.86226 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.27257 * 359.97438 * 5 4 3 7 7 Cl 1.73607 * 119.86713 * 180.02562 * 6 5 4 8 8 C 1.38212 * 120.25890 * 0.02562 * 6 5 4 9 9 C 1.38668 * 119.83752 * 359.97438 * 8 6 5 10 10 N 1.39236 * 133.31220 * 179.97438 * 9 8 6 11 11 C 1.46500 * 125.81864 * 359.97438 * 10 9 8 12 12 N 1.46900 * 109.46821 * 83.55222 * 11 10 9 13 13 C 1.46903 * 110.99746 * 193.26482 * 12 11 10 14 14 C 1.50701 * 109.47092 * 172.43729 * 13 12 11 15 15 H 1.07992 * 120.00143 * 4.50403 * 14 13 12 16 16 C 1.37882 * 119.99691 * 184.50597 * 14 13 12 17 17 N 1.31508 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99572 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46926 * 89.99934 * 18 16 14 20 20 H 1.48504 * 109.46980 * 209.99646 * 18 16 14 21 21 H 1.48497 * 109.47229 * 329.99726 * 18 16 14 22 22 C 1.46896 * 111.00188 * 69.31308 * 12 11 10 23 23 C 1.52997 * 109.47213 * 65.47432 * 22 12 11 24 24 C 1.47203 * 109.47304 * 184.61887 * 23 22 12 25 25 N 6.10764 * 97.64432 * 151.25643 * 2 1 3 26 26 C 1.34641 * 125.81829 * 180.27454 * 2 1 3 27 27 S 1.71202 * 125.16662 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46600 * 90.00343 * 1 2 3 29 29 H 1.08994 * 109.47575 * 210.00236 * 1 2 3 30 30 H 1.08997 * 109.46734 * 330.00840 * 1 2 3 31 31 H 1.07991 * 120.06897 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.86111 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07670 * 179.97438 * 8 6 5 34 34 H 1.08998 * 109.46897 * 323.55552 * 11 10 9 35 35 H 1.08993 * 109.47273 * 203.55120 * 11 10 9 36 36 H 1.09003 * 109.47246 * 292.43781 * 13 12 11 37 37 H 1.08997 * 109.47138 * 52.43706 * 13 12 11 38 38 H 0.97005 * 119.99962 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.47312 * 185.47600 * 22 12 11 40 40 H 1.09000 * 109.47005 * 305.47432 * 22 12 11 41 41 H 1.08999 * 109.47365 * 304.62288 * 23 22 12 42 42 H 1.09004 * 109.47329 * 64.62507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2803 1.1293 0.0000 4 6 2.0192 2.4912 -0.0006 5 6 3.0660 3.3921 -0.0009 6 6 4.3758 2.9408 -0.0002 7 17 5.6836 4.0826 0.0001 8 6 4.6455 1.5853 0.0004 9 6 3.6003 0.6740 0.0008 10 7 3.5462 -0.7174 0.0010 11 6 4.7000 -1.6202 0.0002 12 7 5.1824 -1.7993 1.3762 13 6 6.5080 -2.4322 1.3910 14 6 7.0494 -2.4311 2.7974 15 1 6.4382 -2.0697 3.6110 16 6 8.3253 -2.8915 3.0452 17 7 9.0694 -3.3320 2.0545 18 14 8.9962 -2.8907 4.7887 19 1 8.6700 -4.1822 5.4451 20 1 10.4700 -2.7124 4.7518 21 1 8.3819 -1.7769 5.5550 22 6 4.2213 -2.5717 2.1746 23 6 4.1257 -3.9949 1.6212 24 6 3.0832 -4.7358 2.3499 25 7 2.2774 -5.3075 2.9110 26 6 2.2529 -1.0918 -0.0052 27 16 1.6951 -2.7103 -0.0136 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 0.9994 2.8465 -0.0008 32 1 2.8626 4.4528 -0.0010 33 1 5.6676 1.2368 0.0006 34 1 5.4951 -1.1931 -0.6108 35 1 4.4053 -2.5860 -0.4101 36 1 6.4244 -3.4590 1.0347 37 1 7.1835 -1.8760 0.7412 38 1 9.9669 -3.6562 2.2290 39 1 4.5555 -2.6068 3.2116 40 1 3.2419 -2.0958 2.1245 41 1 3.8712 -3.9565 0.5621 42 1 5.0842 -4.4986 1.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048343138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:53 Heat of formation + Delta-G solvation = 115.940338 kcal Electronic energy + Delta-G solvation = -28093.508229 eV Core-core repulsion = 24227.376743 eV Total energy + Delta-G solvation = -3866.131486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.87814 -38.48881 -37.96892 -36.44582 -35.97266 -35.17762 -32.71846 -30.94666 -30.69247 -30.20582 -28.72855 -26.96675 -25.27241 -24.28739 -23.69566 -22.76057 -21.53905 -20.19296 -18.29834 -18.06502 -17.25293 -17.17832 -16.84104 -16.36866 -15.42615 -15.36848 -15.35416 -14.98316 -14.65035 -14.42086 -14.32357 -13.90196 -13.69034 -13.34546 -13.17346 -12.98373 -12.75341 -12.43304 -12.08470 -11.93125 -11.85186 -11.76296 -11.55473 -11.41680 -11.32287 -11.17193 -11.15097 -10.95646 -10.80543 -10.73842 -10.14136 -10.06857 -9.45916 -9.38302 -8.80567 -8.59343 -7.77857 -7.55489 -7.38342 -6.18756 -4.20923 0.38163 0.74114 1.45147 1.59765 1.75496 2.36311 2.52740 3.09967 3.25499 3.32859 3.36106 3.40394 3.48543 3.90534 4.19473 4.28527 4.44522 4.51821 4.67312 4.68453 4.84373 4.87801 4.92993 4.98943 5.19183 5.21350 5.30205 5.40484 5.45928 5.62166 5.71596 5.75191 5.79791 5.95365 6.07202 6.10381 6.30051 6.52819 6.58002 6.66487 6.90963 7.02518 7.49154 7.68353 7.89031 8.20541 8.24276 8.84701 9.44736 10.91581 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.004372 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.085896 B = 6403.200455 C = 9584.224156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.476 5.476 3 C 0.073 3.927 4 C -0.086 4.086 5 C -0.096 4.096 6 C -0.023 4.023 7 Cl -0.053 7.053 8 C -0.069 4.069 9 C 0.107 3.893 10 N -0.454 5.454 11 C 0.265 3.735 12 N -0.538 5.538 13 C 0.193 3.807 14 C -0.512 4.512 15 H 0.065 0.935 16 C 0.063 3.937 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.075 3.925 23 C -0.067 4.067 24 C 0.240 3.760 25 N -0.468 5.468 26 C 0.496 3.504 27 S -0.594 6.594 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.108 0.892 35 H 0.093 0.907 36 H 0.007 0.993 37 H 0.039 0.961 38 H 0.264 0.736 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 16.504 -8.702 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.170 5.170 3 C -0.032 4.032 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.052 4.052 7 Cl -0.024 7.024 8 C -0.092 4.092 9 C 0.001 3.999 10 N -0.147 5.147 11 C 0.055 3.945 12 N -0.262 5.262 13 C 0.069 3.931 14 C -0.551 4.551 15 H 0.083 0.917 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.055 4.055 23 C -0.109 4.109 24 C -0.078 4.078 25 N -0.146 5.146 26 C 0.141 3.859 27 S -0.459 6.459 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.107 0.893 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.132 0.868 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.027 14.905 -7.704 21.242 hybrid contribution 1.137 0.344 0.378 1.247 sum -11.890 15.249 -7.325 20.677 Atomic orbital electron populations 1.22121 0.73186 1.05714 1.04411 1.44960 1.08015 1.02877 1.61171 1.18477 0.88323 0.89748 1.06667 1.19945 1.00236 0.87802 1.02847 1.20795 0.89624 1.00441 1.00805 1.20455 0.89552 0.89849 1.05331 1.98401 1.47886 1.59257 1.96829 1.20023 0.99223 0.89487 1.00446 1.18069 0.93454 0.83845 1.04536 1.45492 1.06134 1.04593 1.58480 1.22635 0.84132 0.92814 0.94880 1.62388 1.05437 1.50961 1.07423 1.19860 0.81277 0.92877 0.99099 1.21011 0.99189 1.42294 0.92557 0.91711 1.24908 0.96687 0.95120 0.97278 1.69921 1.09962 1.42276 1.31070 0.86525 0.78083 0.78573 0.84477 1.20595 1.21190 1.19760 1.22022 0.95406 0.88650 0.99439 1.20179 0.93954 0.96562 1.00230 1.28944 0.93390 0.92742 0.92712 1.81064 1.11486 1.10959 1.11129 1.23069 0.82212 0.93673 0.86929 1.93499 1.81861 0.96601 1.73976 0.89959 0.87469 0.89300 0.84076 0.83597 0.82926 0.87379 0.88915 0.97511 0.94275 0.92668 0.89072 0.92058 0.86824 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.85 59.85 0.65 1.30 16 2 N -0.48 -5.32 3.19 -122.84 -0.39 -5.71 16 3 C 0.07 0.76 6.83 -83.79 -0.57 0.19 16 4 C -0.09 -0.63 10.02 -39.47 -0.40 -1.02 16 5 C -0.10 -0.69 9.81 -39.51 -0.39 -1.08 16 6 C -0.02 -0.21 6.32 -39.48 -0.25 -0.46 16 7 Cl -0.05 -0.49 28.95 -51.86 -1.50 -1.99 16 8 C -0.07 -0.77 9.80 -39.43 -0.39 -1.15 16 9 C 0.11 1.30 6.83 -83.82 -0.57 0.73 16 10 N -0.45 -6.27 2.70 -118.74 -0.32 -6.59 16 11 C 0.27 3.91 5.50 -63.31 -0.35 3.56 16 12 N -0.54 -9.51 4.85 -239.98 -1.16 -10.67 16 13 C 0.19 4.10 4.39 -4.97 -0.02 4.08 16 14 C -0.51 -12.56 8.61 -34.44 -0.30 -12.85 16 15 H 0.06 1.61 6.76 -52.49 -0.35 1.26 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 17 N -0.89 -23.95 13.29 55.43 0.74 -23.22 16 18 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.07 1.33 4.62 -3.83 -0.02 1.31 16 23 C -0.07 -1.16 4.16 -29.52 -0.12 -1.29 16 24 C 0.24 4.57 15.06 -20.75 -0.31 4.25 16 25 N -0.47 -9.75 18.54 42.16 0.78 -8.97 16 26 C 0.50 7.05 6.66 -87.16 -0.58 6.47 16 27 S -0.59 -10.06 25.20 -107.50 -2.71 -12.77 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.97 7.56 -51.93 -0.39 0.58 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.11 1.43 7.90 -51.93 -0.41 1.02 16 35 H 0.09 1.39 5.26 -51.93 -0.27 1.12 16 36 H 0.01 0.16 6.18 -51.93 -0.32 -0.16 16 37 H 0.04 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.09 1.78 6.66 -51.93 -0.35 1.43 16 40 H 0.06 1.11 5.83 -51.93 -0.30 0.80 16 41 H 0.11 1.90 4.63 -51.93 -0.24 1.66 16 42 H 0.11 2.05 6.56 -51.93 -0.34 1.71 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -30.78 376.54 -12.27 -43.05 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.64 Total: 0.35 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -3.71 Total: 5.54 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: -0.36 Total: -55.16 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -10.06 SS G_CDS: -2.71 Total: -12.77 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.78 -12.27 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048343138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.987 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds