Wall clock time and date at job start Tue Mar 31 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39285 * 125.82894 * 2 1 4 4 C 1.38669 * 133.31561 * 359.96580 * 3 2 1 5 5 C 1.38114 * 119.86226 * 180.02562 * 4 3 2 6 6 C 1.38543 * 120.27257 * 359.97438 * 5 4 3 7 7 Cl 1.73607 * 119.86713 * 180.02562 * 6 5 4 8 8 C 1.38212 * 120.25890 * 0.02562 * 6 5 4 9 9 C 1.38668 * 119.83752 * 359.97438 * 8 6 5 10 10 N 1.39236 * 133.31220 * 179.97438 * 9 8 6 11 11 C 1.46500 * 125.81864 * 359.97438 * 10 9 8 12 12 N 1.46900 * 109.46821 * 83.55222 * 11 10 9 13 13 C 1.46903 * 110.99746 * 193.26482 * 12 11 10 14 14 C 1.50701 * 109.47092 * 172.43729 * 13 12 11 15 15 H 1.07992 * 120.00143 * 4.50403 * 14 13 12 16 16 C 1.37882 * 119.99691 * 184.50597 * 14 13 12 17 17 N 1.31508 * 120.00335 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99572 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46926 * 89.99934 * 18 16 14 20 20 H 1.48504 * 109.46980 * 209.99646 * 18 16 14 21 21 H 1.48497 * 109.47229 * 329.99726 * 18 16 14 22 22 C 1.46896 * 111.00188 * 69.31308 * 12 11 10 23 23 C 1.52997 * 109.47213 * 65.47432 * 22 12 11 24 24 C 1.47203 * 109.47304 * 184.61887 * 23 22 12 25 25 N 6.10764 * 97.64432 * 151.25643 * 2 1 3 26 26 C 1.34641 * 125.81829 * 180.27454 * 2 1 3 27 27 S 1.71202 * 125.16662 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.46600 * 90.00343 * 1 2 3 29 29 H 1.08994 * 109.47575 * 210.00236 * 1 2 3 30 30 H 1.08997 * 109.46734 * 330.00840 * 1 2 3 31 31 H 1.07991 * 120.06897 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.86111 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07670 * 179.97438 * 8 6 5 34 34 H 1.08998 * 109.46897 * 323.55552 * 11 10 9 35 35 H 1.08993 * 109.47273 * 203.55120 * 11 10 9 36 36 H 1.09003 * 109.47246 * 292.43781 * 13 12 11 37 37 H 1.08997 * 109.47138 * 52.43706 * 13 12 11 38 38 H 0.97005 * 119.99962 * 180.02562 * 17 16 14 39 39 H 1.09007 * 109.47312 * 185.47600 * 22 12 11 40 40 H 1.09000 * 109.47005 * 305.47432 * 22 12 11 41 41 H 1.08999 * 109.47365 * 304.62288 * 23 22 12 42 42 H 1.09004 * 109.47329 * 64.62507 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2803 1.1293 0.0000 4 6 2.0192 2.4912 -0.0006 5 6 3.0660 3.3921 -0.0009 6 6 4.3758 2.9408 -0.0002 7 17 5.6836 4.0826 0.0001 8 6 4.6455 1.5853 0.0004 9 6 3.6003 0.6740 0.0008 10 7 3.5462 -0.7174 0.0010 11 6 4.7000 -1.6202 0.0002 12 7 5.1824 -1.7993 1.3762 13 6 6.5080 -2.4322 1.3910 14 6 7.0494 -2.4311 2.7974 15 1 6.4382 -2.0697 3.6110 16 6 8.3253 -2.8915 3.0452 17 7 9.0694 -3.3320 2.0545 18 14 8.9962 -2.8907 4.7887 19 1 8.6700 -4.1822 5.4451 20 1 10.4700 -2.7124 4.7518 21 1 8.3819 -1.7769 5.5550 22 6 4.2213 -2.5717 2.1746 23 6 4.1257 -3.9949 1.6212 24 6 3.0832 -4.7358 2.3499 25 7 2.2774 -5.3075 2.9110 26 6 2.2529 -1.0918 -0.0052 27 16 1.6951 -2.7103 -0.0136 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5137 31 1 0.9994 2.8465 -0.0008 32 1 2.8626 4.4528 -0.0010 33 1 5.6676 1.2368 0.0006 34 1 5.4951 -1.1931 -0.6108 35 1 4.4053 -2.5860 -0.4101 36 1 6.4244 -3.4590 1.0347 37 1 7.1835 -1.8760 0.7412 38 1 9.9669 -3.6562 2.2290 39 1 4.5555 -2.6068 3.2116 40 1 3.2419 -2.0958 2.1245 41 1 3.8712 -3.9565 0.5621 42 1 5.0842 -4.4986 1.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048343138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:52 Heat of formation + Delta-G solvation = 100.390401 kcal Electronic energy + Delta-G solvation = -28094.182525 eV Core-core repulsion = 24227.376743 eV Total energy + Delta-G solvation = -3866.805782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 364.082 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.81062 -39.69390 -38.94130 -37.42186 -37.18402 -36.40206 -34.59766 -31.98278 -31.68743 -31.27029 -29.89656 -28.37456 -26.52952 -25.33397 -25.11248 -23.69428 -22.56718 -21.57820 -19.25497 -19.09215 -18.63054 -18.33307 -18.03038 -17.79552 -16.82673 -16.55962 -16.24822 -16.04469 -16.02937 -15.60913 -15.36083 -15.13958 -14.85624 -14.59423 -14.25876 -13.91510 -13.78454 -13.62450 -13.43597 -13.37704 -13.13939 -12.96859 -12.89515 -12.71882 -12.66812 -12.54052 -12.48015 -12.30839 -11.94843 -11.91876 -11.78180 -11.61233 -11.28838 -10.55724 -10.24209 -9.61185 -9.26162 -8.82840 -8.56793 -8.15680 -6.21603 -0.47496 -0.02018 0.43238 0.64393 0.99539 1.31204 1.44131 1.47487 1.55208 1.62176 1.83355 1.91795 2.35957 2.44084 2.93207 3.10783 3.21051 3.34129 3.41190 3.81229 3.87668 3.92382 4.02250 4.12321 4.16110 4.24349 4.30270 4.37615 4.44266 4.60015 4.71292 4.75603 4.79213 4.97854 5.08085 5.10134 5.16942 5.23064 5.28206 5.31517 5.55026 5.67732 5.76684 5.98390 6.13834 6.43303 6.67918 6.90264 7.46715 8.94254 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.007265 B = 0.004372 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.085896 B = 6403.200455 C = 9584.224156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.462 5.462 3 C 0.067 3.933 4 C -0.065 4.065 5 C -0.082 4.082 6 C -0.022 4.022 7 Cl -0.053 7.053 8 C -0.085 4.085 9 C 0.080 3.920 10 N -0.455 5.455 11 C 0.271 3.729 12 N -0.537 5.537 13 C 0.208 3.792 14 C -0.516 4.516 15 H 0.059 0.941 16 C 0.019 3.981 17 N -0.923 5.923 18 Si 0.948 3.052 19 H -0.281 1.281 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.088 3.912 23 C -0.054 4.054 24 C 0.254 3.746 25 N -0.497 5.497 26 C 0.495 3.505 27 S -0.667 6.667 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.128 0.872 31 H 0.185 0.815 32 H 0.182 0.818 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.000 1.000 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.122 0.878 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.228 19.826 -8.845 25.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.154 5.154 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.102 4.102 6 C -0.051 4.051 7 Cl -0.024 7.024 8 C -0.108 4.108 9 C -0.025 4.025 10 N -0.147 5.147 11 C 0.061 3.939 12 N -0.261 5.261 13 C 0.083 3.917 14 C -0.554 4.554 15 H 0.077 0.923 16 C -0.181 4.181 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.207 1.207 20 H -0.210 1.210 21 H -0.194 1.194 22 C -0.042 4.042 23 C -0.096 4.096 24 C -0.063 4.063 25 N -0.175 5.175 26 C 0.136 3.864 27 S -0.534 6.534 28 H 0.118 0.882 29 H 0.107 0.893 30 H 0.146 0.854 31 H 0.203 0.797 32 H 0.199 0.801 33 H 0.157 0.843 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.017 0.983 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.140 0.860 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.501 18.291 -7.849 24.626 hybrid contribution 1.559 -0.418 0.368 1.655 sum -12.943 17.873 -7.481 23.301 Atomic orbital electron populations 1.22474 0.70981 1.06755 1.05904 1.45175 1.09153 1.02203 1.58880 1.18806 0.87140 0.90646 1.07193 1.20455 1.02367 0.85887 0.99942 1.21243 0.88293 1.02244 0.98442 1.20643 0.90639 0.89109 1.04709 1.98409 1.48294 1.58938 1.96766 1.19997 0.98552 0.90367 1.01854 1.18319 0.94953 0.82838 1.06436 1.45268 1.05639 1.05480 1.58323 1.22522 0.85002 0.93363 0.93049 1.62225 1.04176 1.50304 1.09429 1.19503 0.82707 0.92412 0.97124 1.21298 0.99073 1.41185 0.93865 0.92321 1.25539 0.97215 0.95223 1.00099 1.70005 1.10222 1.43531 1.32533 0.85705 0.77458 0.78359 0.81038 1.20694 1.21022 1.19444 1.21822 0.95152 0.88871 0.98397 1.20108 0.93040 0.95963 1.00455 1.29149 0.93025 0.92111 0.92028 1.81056 1.12395 1.11918 1.12163 1.22630 0.82539 0.93351 0.87903 1.93561 1.82543 0.99661 1.77667 0.88205 0.89264 0.85404 0.79732 0.80101 0.84250 0.86107 0.89207 0.98276 0.95559 0.92757 0.90911 0.91984 0.85996 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 10.85 127.77 1.39 2.35 16 2 N -0.46 -9.32 3.19 -542.55 -1.73 -11.05 16 3 C 0.07 1.18 6.83 38.40 0.26 1.45 16 4 C -0.07 -0.61 10.02 22.34 0.22 -0.38 16 5 C -0.08 -0.79 9.81 22.31 0.22 -0.57 16 6 C -0.02 -0.35 6.32 22.34 0.14 -0.21 16 7 Cl -0.05 -0.88 28.95 -2.72 -0.08 -0.95 16 8 C -0.09 -1.79 9.80 22.37 0.22 -1.57 16 9 C 0.08 1.83 6.83 38.40 0.26 2.09 16 10 N -0.45 -12.44 2.70 -529.59 -1.43 -13.87 16 11 C 0.27 8.12 5.50 170.81 0.94 9.06 16 12 N -0.54 -19.33 4.85 -913.17 -4.43 -23.76 16 13 C 0.21 9.02 4.39 85.56 0.38 9.40 16 14 C -0.52 -25.61 8.61 25.60 0.22 -25.39 16 15 H 0.06 2.95 6.76 -2.91 -0.02 2.93 16 16 C 0.02 0.96 5.46 84.66 0.46 1.43 16 17 N -0.92 -50.08 13.29 21.45 0.28 -49.80 16 18 Si 0.95 41.86 29.54 68.60 2.03 43.88 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 C 0.09 3.19 4.62 86.30 0.40 3.59 16 23 C -0.05 -1.91 4.16 28.79 0.12 -1.79 16 24 C 0.25 9.89 15.06 89.44 1.35 11.24 16 25 N -0.50 -21.06 18.54 20.01 0.37 -20.69 16 26 C 0.49 13.83 6.66 179.14 1.19 15.02 16 27 S -0.67 -23.13 25.20 -56.49 -1.42 -24.55 16 28 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.09 1.51 7.56 -2.39 -0.02 1.49 16 30 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.19 0.19 8.06 -2.92 -0.02 0.17 16 32 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.12 3.27 7.90 -2.39 -0.02 3.25 16 35 H 0.09 2.77 5.26 -2.39 -0.01 2.76 16 36 H 0.00 -0.02 6.18 -2.39 -0.01 -0.03 16 37 H 0.03 1.22 7.94 -2.39 -0.02 1.20 16 38 H 0.26 13.74 8.31 -92.70 -0.77 12.97 16 39 H 0.07 2.91 6.66 -2.38 -0.02 2.89 16 40 H 0.06 2.28 5.83 -2.39 -0.01 2.27 16 41 H 0.12 4.21 4.63 -2.39 -0.01 4.20 16 42 H 0.11 4.01 6.56 -2.38 -0.02 3.99 16 Total: -1.00 -68.58 376.54 2.45 -66.14 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.08 Total: 8.96 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: 7.77 Total: 25.69 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.93 Total: -119.17 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 16 Polarization: -23.13 SS G_CDS: -1.42 Total: -24.55 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -68.58 2.45 -66.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048343138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.528 kcal (2) G-P(sol) polarization free energy of solvation -68.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds