Wall clock time and date at job start Tue Mar 31 2020 06:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86801 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47064 * 269.72619 * 3 2 1 5 5 H 1.48496 * 109.47079 * 29.72494 * 3 2 1 6 6 H 1.48494 * 109.47411 * 149.72765 * 3 2 1 7 7 C 1.38773 * 119.99919 * 179.72732 * 2 1 3 8 8 H 1.08000 * 120.00018 * 0.26925 * 7 2 1 9 9 S 1.76203 * 119.99811 * 180.27514 * 7 2 1 10 10 C 1.76202 * 99.99871 * 174.34846 * 9 7 2 11 11 C 1.39080 * 120.17810 * 353.18386 * 10 9 7 12 12 C 1.37943 * 120.04241 * 179.97438 * 11 10 9 13 13 C 1.38603 * 120.40995 * 359.97438 * 12 11 10 14 14 C 1.37885 * 120.35675 * 0.02724 * 13 12 11 15 15 C 1.39531 * 119.95101 * 359.71267 * 14 13 12 16 16 C 1.47682 * 120.20571 * 180.25502 * 15 14 13 17 17 O 1.35277 * 119.99581 * 0.28514 * 16 15 14 18 18 N 1.30150 * 120.00329 * 180.27450 * 16 15 14 19 19 S 1.65596 * 120.00205 * 180.02562 * 18 16 15 20 20 O 1.42101 * 106.40434 * 293.54616 * 19 18 16 21 21 O 1.42100 * 106.40057 * 66.46730 * 19 18 16 22 22 C 1.76205 * 107.21932 * 180.02562 * 19 18 16 23 23 C 1.38678 * 120.41476 * 269.72040 * 22 19 18 24 24 C 1.38633 * 118.41330 * 179.77962 * 23 22 19 25 25 C 1.38223 * 119.16069 * 0.52074 * 24 23 22 26 26 N 1.31851 * 120.76593 * 359.72056 * 25 24 23 27 27 C 1.31889 * 121.72666 * 0.02562 * 26 25 24 28 28 H 0.97001 * 120.00074 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.97653 * 359.97438 * 11 10 9 30 30 H 1.07998 * 119.79749 * 179.97438 * 12 11 10 31 31 H 1.07998 * 119.82410 * 179.97438 * 13 12 11 32 32 H 1.08002 * 120.02776 * 179.97438 * 14 13 12 33 33 H 0.96704 * 113.99803 * 179.97438 * 17 16 15 34 34 H 1.07992 * 120.79433 * 0.02863 * 23 22 19 35 35 H 1.08000 * 120.41293 * 180.22515 * 24 23 22 36 36 H 1.08004 * 119.61258 * 179.74708 * 25 24 23 37 37 H 1.07995 * 119.61614 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.5031 2.0430 -1.4001 5 1 1.4444 2.6543 0.6942 6 1 3.5444 1.4419 0.7057 7 6 2.0096 -1.2018 0.0057 8 1 1.4696 -2.1371 0.0058 9 16 3.7716 -1.2017 0.0130 10 6 4.0768 -2.9282 0.1893 11 6 3.0216 -3.8050 0.4172 12 6 3.2638 -5.1561 0.5542 13 6 4.5558 -5.6499 0.4657 14 6 5.6144 -4.7955 0.2402 15 6 5.3860 -3.4268 0.0939 16 6 6.5149 -2.5074 -0.1534 17 8 7.7745 -2.9923 -0.2444 18 7 6.2980 -1.2308 -0.2839 19 16 7.5638 -0.2000 -0.5618 20 8 8.3632 -0.2202 0.6128 21 8 8.0680 -0.5221 -1.8507 22 6 6.8959 1.4263 -0.6804 23 6 6.4936 1.9323 -1.9073 24 6 5.9696 3.2150 -1.9522 25 6 5.8763 3.9456 -0.7825 26 7 6.2735 3.4339 0.3659 27 6 6.7721 2.2156 0.4469 28 1 -0.4850 0.8400 0.0004 29 1 2.0120 -3.4279 0.4869 30 1 2.4415 -5.8334 0.7315 31 1 4.7346 -6.7093 0.5749 32 1 6.6191 -5.1859 0.1727 33 1 8.4456 -2.3155 -0.4078 34 1 6.5826 1.3397 -2.8058 35 1 5.6429 3.6396 -2.8899 36 1 5.4731 4.9472 -0.8097 37 1 7.0873 1.8305 1.4053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048532049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:16 Heat of formation + Delta-G solvation = -36.465226 kcal Electronic energy + Delta-G solvation = -27883.062679 eV Core-core repulsion = 23844.240252 eV Total energy + Delta-G solvation = -4038.822427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.038 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41637 -41.14226 -39.44138 -38.58882 -37.29773 -35.29715 -34.77710 -33.88196 -32.68019 -32.21722 -31.83228 -27.99030 -25.96296 -25.27881 -24.92387 -23.69449 -22.57337 -21.20206 -19.99892 -19.67108 -19.40488 -18.32919 -17.96945 -17.81026 -17.39656 -16.94313 -16.91669 -16.64323 -16.02258 -15.73389 -15.48815 -15.38931 -15.25806 -15.11360 -14.50290 -14.44889 -13.99153 -13.92647 -13.84974 -13.62758 -13.58044 -13.42343 -13.16442 -13.08475 -12.53624 -12.41497 -12.30407 -12.10365 -11.77968 -11.49822 -11.46796 -11.30379 -10.80085 -10.63967 -10.57597 -10.01563 -9.92143 -8.67441 -8.60028 -6.28419 -1.03035 -0.63638 -0.56138 -0.01979 0.47104 0.97828 1.00962 1.16584 1.33494 1.54107 1.62257 1.75542 1.89307 2.11047 2.48141 2.74825 2.77145 2.88262 3.10400 3.23416 3.63283 3.67348 3.83815 3.91769 4.02989 4.15367 4.25099 4.30322 4.47221 4.58246 4.61247 4.61910 4.73428 4.79247 5.09013 5.32620 5.35841 5.48145 5.61920 5.65807 5.99681 6.04216 6.20729 6.55834 6.83915 8.50432 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.008380 B = 0.006280 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3340.594455 B = 4457.468479 C = 7335.643824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.250 1.250 5 H -0.263 1.263 6 H -0.232 1.232 7 C -0.598 4.598 8 H 0.085 0.915 9 S 0.110 5.890 10 C -0.041 4.041 11 C -0.172 4.172 12 C -0.048 4.048 13 C -0.153 4.153 14 C -0.034 4.034 15 C -0.125 4.125 16 C 0.537 3.463 17 O -0.480 6.480 18 N -0.994 5.994 19 S 2.631 3.369 20 O -0.988 6.988 21 O -0.986 6.986 22 C -0.702 4.702 23 C 0.013 3.987 24 C -0.188 4.188 25 C 0.142 3.858 26 N -0.515 5.515 27 C 0.189 3.811 28 H 0.278 0.722 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.163 0.837 33 H 0.397 0.603 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.204 0.796 37 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.121 -2.369 -2.606 13.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.148 4.148 3 Si 0.709 3.291 4 H -0.174 1.174 5 H -0.188 1.188 6 H -0.155 1.155 7 C -0.745 4.745 8 H 0.103 0.897 9 S 0.371 5.629 10 C -0.160 4.160 11 C -0.196 4.196 12 C -0.071 4.071 13 C -0.175 4.175 14 C -0.055 4.055 15 C -0.139 4.139 16 C 0.325 3.675 17 O -0.274 6.274 18 N -0.862 5.862 19 S 2.728 3.272 20 O -0.977 6.977 21 O -0.975 6.975 22 C -0.794 4.794 23 C -0.014 4.014 24 C -0.208 4.208 25 C -0.014 4.014 26 N -0.225 5.225 27 C 0.030 3.970 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.171 0.829 31 H 0.188 0.812 32 H 0.181 0.819 33 H 0.254 0.746 34 H 0.184 0.816 35 H 0.204 0.796 36 H 0.220 0.780 37 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 13.728 -0.719 -1.974 13.888 hybrid contribution -0.788 0.300 -0.731 1.115 sum 12.941 -0.419 -2.704 13.227 Atomic orbital electron populations 1.69997 1.07470 1.29102 1.47324 1.25503 0.95107 1.01743 0.92489 0.86293 0.81318 0.80609 0.80924 1.17418 1.18772 1.15528 1.24090 0.95337 0.97621 1.57463 0.89736 1.83976 1.00317 0.99957 1.78683 1.22516 0.94997 1.00210 0.98279 1.21480 0.98580 0.94654 1.04925 1.21665 0.98835 0.93671 0.92885 1.21384 0.91038 1.01436 1.03631 1.21548 1.01620 0.89505 0.92790 1.17473 0.86693 0.92720 1.16975 1.21902 0.83611 0.86644 0.75313 1.85054 1.15384 1.42258 1.84715 1.74149 1.53461 1.12379 1.46212 1.03543 0.72990 0.76815 0.73890 1.93607 1.67655 1.87327 1.49097 1.93602 1.78654 1.83425 1.41851 1.30794 1.22887 1.23257 1.02502 1.21754 0.87300 0.96139 0.96168 1.22755 1.00818 0.94777 1.02427 1.23948 0.89193 1.01050 0.87206 1.67891 1.11861 1.13092 1.29608 1.22739 0.87823 0.89100 0.97302 0.91271 0.86013 0.82890 0.81181 0.81902 0.74569 0.81613 0.79563 0.77959 0.80824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.33 13.96 21.64 0.30 -52.02 16 2 C 0.06 3.24 5.50 84.86 0.47 3.71 16 3 Si 0.89 41.14 27.74 68.60 1.90 43.04 16 4 H -0.25 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.23 -10.60 6.74 99.48 0.67 -9.93 16 7 C -0.60 -32.50 9.54 67.95 0.65 -31.85 16 8 H 0.08 4.84 5.21 -2.91 -0.02 4.83 16 9 S 0.11 5.10 16.23 -56.49 -0.92 4.18 16 10 C -0.04 -1.62 6.14 23.00 0.14 -1.48 16 11 C -0.17 -6.38 9.22 22.40 0.21 -6.17 16 12 C -0.05 -1.28 10.03 22.29 0.22 -1.05 16 13 C -0.15 -3.25 10.03 22.27 0.22 -3.02 16 14 C -0.03 -0.83 9.61 22.50 0.22 -0.61 16 15 C -0.12 -4.15 5.89 -19.94 -0.12 -4.27 16 16 C 0.54 17.73 7.88 87.44 0.69 18.42 16 17 O -0.48 -12.97 12.81 -85.49 -1.10 -14.07 16 18 N -0.99 -35.79 7.27 -166.97 -1.21 -37.00 16 19 S 2.63 86.33 4.26 -56.49 -0.24 86.09 16 20 O -0.99 -33.89 16.63 -127.17 -2.11 -36.00 16 21 O -0.99 -33.16 16.68 -127.18 -2.12 -35.28 16 22 C -0.70 -22.42 5.99 22.36 0.13 -22.28 16 23 C 0.01 0.36 9.65 22.47 0.22 0.58 16 24 C -0.19 -4.25 10.11 22.36 0.23 -4.02 16 25 C 0.14 3.40 11.18 84.69 0.95 4.34 16 26 N -0.51 -15.73 10.36 -195.85 -2.03 -17.76 16 27 C 0.19 6.09 10.69 84.67 0.90 7.00 16 28 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.12 5.24 5.03 -2.91 -0.01 5.23 16 30 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 31 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.16 2.95 7.61 -2.91 -0.02 2.92 16 33 H 0.40 9.84 5.72 -78.27 -0.45 9.39 16 34 H 0.17 4.01 7.70 -2.91 -0.02 3.99 16 35 H 0.19 2.63 8.06 -2.91 -0.02 2.60 16 36 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 37 H 0.17 5.23 7.63 -2.91 -0.02 5.21 16 Total: -1.00 -72.55 347.79 -1.73 -74.28 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.68 Total: 25.25 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 5.13 Total: -40.71 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -2.94 Total: -106.78 kcal Atomic # 8 Polarization: -80.02 SS G_CDS: -5.33 Total: -85.35 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.90 Total: 43.04 kcal Atomic # 16 Polarization: 91.43 SS G_CDS: -1.16 Total: 90.27 kcal Total: -72.55 -1.73 -74.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048532049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.812 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds