Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35133 * 125.61351 * 2 1 4 4 C 1.40369 * 107.11184 * 180.02562 * 3 2 1 5 5 C 1.36540 * 106.70828 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98851 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99755 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00384 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00301 * 179.97438 * 8 6 5 10 10 C 1.53120 * 109.52317 * 205.00117 * 9 8 6 11 11 C 1.53039 * 109.27752 * 182.44201 * 10 9 8 12 12 N 1.46846 * 109.52263 * 59.17824 * 11 10 9 13 13 C 1.46895 * 111.00110 * 174.15901 * 12 11 10 14 14 C 1.50705 * 109.47462 * 293.61079 * 13 12 11 15 15 O 1.21284 * 119.99562 * 353.72667 * 14 13 12 16 16 N 1.34775 * 120.00396 * 173.73089 * 14 13 12 17 17 C 1.46500 * 119.99605 * 359.97438 * 16 14 13 18 18 C 1.46493 * 120.00068 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47323 * 90.00235 * 18 16 14 20 20 H 1.08001 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00005 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99971 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00162 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47434 * 90.00322 * 23 21 19 25 25 H 1.48505 * 109.47208 * 210.00172 * 23 21 19 26 26 H 1.48505 * 109.47381 * 329.99956 * 23 21 19 27 27 C 1.46846 * 111.19890 * 298.25993 * 12 11 10 28 28 C 1.53032 * 109.52278 * 61.74355 * 27 12 11 29 29 O 1.33927 * 125.61639 * 180.32736 * 2 1 3 30 30 H 1.08997 * 109.46877 * 89.99951 * 1 2 3 31 31 H 1.09000 * 109.46576 * 209.99773 * 1 2 3 32 32 H 1.08993 * 109.46857 * 329.99290 * 1 2 3 33 33 H 1.07997 * 126.44229 * 0.04021 * 3 2 1 34 34 H 1.07994 * 126.64444 * 179.97438 * 4 3 2 35 35 H 0.97003 * 119.99438 * 359.97438 * 8 6 5 36 36 H 1.08989 * 109.52187 * 325.13053 * 9 8 6 37 37 H 1.09002 * 109.50619 * 62.50221 * 10 9 8 38 38 H 1.09007 * 109.50380 * 302.38041 * 10 9 8 39 39 H 1.08998 * 109.46234 * 299.16240 * 11 10 9 40 40 H 1.08998 * 109.45351 * 179.18494 * 11 10 9 41 41 H 1.08996 * 109.47632 * 173.60666 * 13 12 11 42 42 H 1.09001 * 109.46989 * 53.61171 * 13 12 11 43 43 H 1.09001 * 109.47215 * 269.99861 * 17 16 14 44 44 H 1.09001 * 109.47372 * 30.00234 * 17 16 14 45 45 H 1.09003 * 109.46839 * 150.00284 * 17 16 14 46 46 H 1.09011 * 109.47124 * 210.00111 * 18 16 14 47 47 H 1.09001 * 109.47485 * 329.99450 * 18 16 14 48 48 H 0.96994 * 120.00520 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.46198 * 181.76134 * 27 12 11 50 50 H 1.08997 * 109.46322 * 301.72498 * 27 12 11 51 51 H 1.09004 * 109.50399 * 180.88039 * 28 27 12 52 52 H 1.09000 * 109.50863 * 60.76678 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5824 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8681 -1.1499 -0.0020 8 7 4.5591 -2.9455 -0.0015 9 6 5.7170 -3.8430 -0.0030 10 6 5.3194 -5.1900 -0.6129 11 6 6.5155 -6.1431 -0.5561 12 7 6.9346 -6.3220 0.8399 13 6 7.9911 -7.3370 0.9464 14 6 7.4319 -8.6855 0.5720 15 8 6.2446 -8.8116 0.3589 16 7 8.2510 -9.7512 0.4741 17 6 9.6852 -9.5987 0.7311 18 6 7.7073 -11.0620 0.1107 19 6 7.7361 -11.2200 -1.3877 20 1 8.1206 -10.4233 -2.0074 21 6 7.2706 -12.3810 -1.9676 22 7 7.2953 -12.5187 -3.2754 23 14 6.6050 -13.7586 -0.8959 24 1 5.1461 -13.5683 -0.6946 25 1 6.8468 -15.0641 -1.5611 26 1 7.2931 -13.7387 0.4199 27 6 7.3658 -5.0493 1.4322 28 6 6.1951 -4.0638 1.4348 29 8 2.2870 -1.0887 -0.0062 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.9612 2.1260 0.0006 34 1 4.5113 1.2703 -0.0011 35 1 3.6611 -3.3122 -0.0006 36 1 6.5205 -3.3998 -0.5911 37 1 5.0185 -5.0452 -1.6504 38 1 4.4890 -5.6142 -0.0483 39 1 7.3408 -5.7248 -1.1322 40 1 6.2313 -7.1077 -0.9764 41 1 8.3621 -7.3693 1.9708 42 1 8.8086 -7.0827 0.2719 43 1 10.1966 -9.3499 -0.1988 44 1 9.8415 -8.8002 1.4565 45 1 10.0847 -10.5324 1.1269 46 1 8.3100 -11.8455 0.5702 47 1 6.6793 -11.1399 0.4646 48 1 6.9682 -13.3356 -3.6834 49 1 7.6994 -5.2197 2.4558 50 1 8.1871 -4.6361 0.8467 51 1 6.5198 -3.1141 1.8601 52 1 5.3785 -4.4701 2.0316 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051097380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -43.596837 kcal Electronic energy + Delta-G solvation = -32383.573451 eV Core-core repulsion = 27964.153979 eV Total energy + Delta-G solvation = -4419.419473 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.08215 -40.22214 -39.34879 -38.02543 -35.34102 -34.76386 -33.70286 -32.63243 -32.48149 -31.75197 -30.89799 -29.00748 -27.84934 -26.68833 -25.65513 -23.80264 -23.23837 -22.35905 -21.99289 -21.66732 -20.55228 -20.07958 -18.51334 -18.41816 -16.96882 -16.86618 -16.69923 -16.39075 -16.01260 -15.69976 -15.30748 -15.09707 -14.87123 -14.52338 -14.46035 -13.93135 -13.84604 -13.74280 -13.61438 -13.49867 -13.37487 -13.28562 -13.19340 -12.72228 -12.64029 -12.39565 -12.35720 -12.13116 -11.96919 -11.68703 -11.59804 -11.40265 -11.25256 -10.95500 -10.89334 -10.60721 -10.51518 -10.42237 -10.40976 -10.12092 -9.54585 -9.38502 -8.97888 -8.85602 -8.58820 -8.18204 -7.67340 -6.08825 -4.07386 0.68508 1.93174 2.21443 2.87268 2.88805 3.29159 3.34722 3.36357 3.37056 3.59924 4.14581 4.16140 4.39634 4.45161 4.51291 4.65546 4.70328 4.84965 4.92159 4.96623 5.01965 5.13629 5.18325 5.24436 5.25439 5.31576 5.35908 5.40198 5.44105 5.47940 5.53481 5.55841 5.58386 5.63596 5.79905 5.85723 5.89141 5.97030 6.00807 6.07116 6.13702 6.25537 6.27217 6.48747 6.67846 6.91301 7.04554 7.15075 7.19854 7.36140 7.61567 7.78966 8.26782 8.47251 8.93175 9.03062 9.51695 11.04568 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.001741 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.015270 B =16083.005870 C =17142.942814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.116 4.116 5 C -0.082 4.082 6 C 0.604 3.396 7 O -0.522 6.522 8 N -0.712 5.712 9 C 0.143 3.857 10 C -0.119 4.119 11 C 0.057 3.943 12 N -0.520 5.520 13 C 0.039 3.961 14 C 0.507 3.493 15 O -0.522 6.522 16 N -0.601 5.601 17 C 0.086 3.914 18 C 0.217 3.783 19 C -0.527 4.527 20 H 0.073 0.927 21 C 0.071 3.929 22 N -0.898 5.898 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.266 1.266 27 C 0.060 3.940 28 C -0.124 4.124 29 O -0.162 6.162 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.029 0.971 47 H 0.037 0.963 48 H 0.264 0.736 49 H 0.078 0.922 50 H 0.035 0.965 51 H 0.071 0.929 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 25.821 10.024 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.032 4.032 3 C -0.244 4.244 4 C -0.137 4.137 5 C -0.134 4.134 6 C 0.390 3.610 7 O -0.400 6.400 8 N -0.362 5.362 9 C 0.039 3.961 10 C -0.158 4.158 11 C -0.072 4.072 12 N -0.245 5.245 13 C -0.092 4.092 14 C 0.293 3.707 15 O -0.398 6.398 16 N -0.335 5.335 17 C -0.058 4.058 18 C 0.096 3.904 19 C -0.566 4.566 20 H 0.091 0.909 21 C -0.131 4.131 22 N -0.537 5.537 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.069 4.069 28 C -0.162 4.162 29 O -0.058 6.058 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.111 0.889 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.097 0.903 50 H 0.054 0.946 51 H 0.090 0.910 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.609 25.431 10.015 28.371 hybrid contribution 0.141 -0.477 -0.110 0.509 sum -7.468 24.954 9.905 27.867 Atomic orbital electron populations 1.20438 0.84453 1.04614 1.04102 1.22863 0.94351 0.84069 1.01955 1.21608 0.92337 0.99862 1.10606 1.21959 0.98664 0.92954 1.00119 1.22071 0.81889 0.94678 1.14721 1.16550 0.86016 0.81646 0.76776 1.90884 1.22028 1.76149 1.50895 1.46024 1.10919 1.05226 1.74023 1.21206 0.87973 0.89642 0.97290 1.21833 0.99752 0.92897 1.01273 1.22152 0.95778 1.01207 0.88016 1.61570 1.37411 1.06753 1.18810 1.22002 0.93217 0.91469 1.02504 1.20170 0.86948 0.85224 0.78363 1.90652 1.15553 1.84481 1.49082 1.47848 1.07209 1.10479 1.67932 1.21634 0.82238 1.01722 1.00209 1.19657 0.95002 0.78951 0.96768 1.21323 1.42331 1.02982 0.89958 0.90879 1.24866 0.95099 0.98231 0.94899 1.69898 1.47038 1.27388 1.09336 0.86836 0.80218 0.81660 0.80866 1.19904 1.21118 1.19103 1.22043 0.95896 0.88989 0.99948 1.21948 0.98948 0.98857 0.96491 1.84008 1.15978 1.35006 1.70841 0.89454 0.90013 0.88879 0.82619 0.82213 0.75910 0.89334 0.90771 0.90020 0.95079 0.87851 0.88399 0.92379 0.92936 0.92519 0.91372 0.95335 0.94545 0.92591 0.90332 0.94641 0.91020 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.41 36.01 0.38 0.09 16 2 C 0.02 0.15 7.31 -35.41 -0.26 -0.11 16 3 C -0.23 -1.67 10.77 -39.88 -0.43 -2.10 16 4 C -0.12 -1.10 10.62 -39.39 -0.42 -1.52 16 5 C -0.08 -0.87 7.13 -36.80 -0.26 -1.13 16 6 C 0.60 7.23 7.76 -12.86 -0.10 7.13 16 7 O -0.52 -7.66 16.53 5.19 0.09 -7.58 16 8 N -0.71 -7.40 5.08 -55.00 -0.28 -7.68 16 9 C 0.14 1.60 2.52 -67.81 -0.17 1.43 16 10 C -0.12 -1.44 5.57 -26.65 -0.15 -1.59 16 11 C 0.06 0.83 5.12 -3.83 -0.02 0.81 16 12 N -0.52 -7.40 4.35 -236.12 -1.03 -8.42 16 13 C 0.04 0.57 3.91 -4.98 -0.02 0.55 16 14 C 0.51 10.07 7.20 -10.98 -0.08 9.99 16 15 O -0.52 -12.48 14.29 5.55 0.08 -12.40 16 16 N -0.60 -12.16 2.86 -182.95 -0.52 -12.69 16 17 C 0.09 1.28 10.17 59.85 0.61 1.89 16 18 C 0.22 5.27 4.27 -5.20 -0.02 5.25 16 19 C -0.53 -15.09 9.94 -34.44 -0.34 -15.43 16 20 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 21 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 22 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 23 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 27 C 0.06 0.67 5.46 -3.84 -0.02 0.65 16 28 C -0.12 -1.35 5.67 -26.65 -0.15 -1.50 16 29 O -0.16 -1.54 10.40 5.00 0.05 -1.49 16 30 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.16 0.75 8.06 -52.49 -0.42 0.32 16 34 H 0.16 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.41 3.56 8.36 -40.82 -0.34 3.22 16 36 H 0.09 1.10 7.57 -51.94 -0.39 0.71 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 1.91 6.06 -51.93 -0.31 1.60 16 41 H 0.10 1.17 7.55 -51.93 -0.39 0.77 16 42 H 0.06 0.77 7.90 -51.93 -0.41 0.36 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.63 6.61 -51.93 -0.34 0.29 16 45 H 0.07 0.95 7.89 -51.93 -0.41 0.54 16 46 H 0.03 0.66 6.95 -51.92 -0.36 0.30 16 47 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.08 0.78 8.01 -51.93 -0.42 0.36 16 50 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 52 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 422.65 15.07 6.37 6.37 Total: -1.00 -36.34 422.65 -9.09 -45.44 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.40 Total: 2.04 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: -1.56 Total: 6.38 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.05 Total: -55.65 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.22 Total: -21.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -36.34 -9.09 -45.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051097380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.842 kcal (2) G-P(sol) polarization free energy of solvation -36.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds