Wall clock time and date at job start Tue Mar 31 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35133 * 125.61351 * 2 1 4 4 C 1.40369 * 107.11184 * 180.02562 * 3 2 1 5 5 C 1.36540 * 106.70828 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98851 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99755 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00384 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00301 * 179.97438 * 8 6 5 10 10 C 1.53120 * 109.52317 * 205.00117 * 9 8 6 11 11 C 1.53039 * 109.27752 * 182.44201 * 10 9 8 12 12 N 1.46846 * 109.52263 * 59.17824 * 11 10 9 13 13 C 1.46895 * 111.00110 * 174.15901 * 12 11 10 14 14 C 1.50705 * 109.47462 * 293.61079 * 13 12 11 15 15 O 1.21284 * 119.99562 * 353.72667 * 14 13 12 16 16 N 1.34775 * 120.00396 * 173.73089 * 14 13 12 17 17 C 1.46500 * 119.99605 * 359.97438 * 16 14 13 18 18 C 1.46493 * 120.00068 * 179.97438 * 16 14 13 19 19 C 1.50697 * 109.47323 * 90.00235 * 18 16 14 20 20 H 1.08001 * 119.99735 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00005 * 180.02562 * 19 18 16 22 22 N 1.31520 * 119.99971 * 179.97438 * 21 19 18 23 23 Si 1.86792 * 120.00162 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47434 * 90.00322 * 23 21 19 25 25 H 1.48505 * 109.47208 * 210.00172 * 23 21 19 26 26 H 1.48505 * 109.47381 * 329.99956 * 23 21 19 27 27 C 1.46846 * 111.19890 * 298.25993 * 12 11 10 28 28 C 1.53032 * 109.52278 * 61.74355 * 27 12 11 29 29 O 1.33927 * 125.61639 * 180.32736 * 2 1 3 30 30 H 1.08997 * 109.46877 * 89.99951 * 1 2 3 31 31 H 1.09000 * 109.46576 * 209.99773 * 1 2 3 32 32 H 1.08993 * 109.46857 * 329.99290 * 1 2 3 33 33 H 1.07997 * 126.44229 * 0.04021 * 3 2 1 34 34 H 1.07994 * 126.64444 * 179.97438 * 4 3 2 35 35 H 0.97003 * 119.99438 * 359.97438 * 8 6 5 36 36 H 1.08989 * 109.52187 * 325.13053 * 9 8 6 37 37 H 1.09002 * 109.50619 * 62.50221 * 10 9 8 38 38 H 1.09007 * 109.50380 * 302.38041 * 10 9 8 39 39 H 1.08998 * 109.46234 * 299.16240 * 11 10 9 40 40 H 1.08998 * 109.45351 * 179.18494 * 11 10 9 41 41 H 1.08996 * 109.47632 * 173.60666 * 13 12 11 42 42 H 1.09001 * 109.46989 * 53.61171 * 13 12 11 43 43 H 1.09001 * 109.47215 * 269.99861 * 17 16 14 44 44 H 1.09001 * 109.47372 * 30.00234 * 17 16 14 45 45 H 1.09003 * 109.46839 * 150.00284 * 17 16 14 46 46 H 1.09011 * 109.47124 * 210.00111 * 18 16 14 47 47 H 1.09001 * 109.47485 * 329.99450 * 18 16 14 48 48 H 0.96994 * 120.00520 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.46198 * 181.76134 * 27 12 11 50 50 H 1.08997 * 109.46322 * 301.72498 * 27 12 11 51 51 H 1.09004 * 109.50399 * 180.88039 * 28 27 12 52 52 H 1.09000 * 109.50863 * 60.76678 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2940 1.0986 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 3.5824 -0.7116 -0.0004 6 6 4.7415 -1.6101 -0.0013 7 8 5.8681 -1.1499 -0.0020 8 7 4.5591 -2.9455 -0.0015 9 6 5.7170 -3.8430 -0.0030 10 6 5.3194 -5.1900 -0.6129 11 6 6.5155 -6.1431 -0.5561 12 7 6.9346 -6.3220 0.8399 13 6 7.9911 -7.3370 0.9464 14 6 7.4319 -8.6855 0.5720 15 8 6.2446 -8.8116 0.3589 16 7 8.2510 -9.7512 0.4741 17 6 9.6852 -9.5987 0.7311 18 6 7.7073 -11.0620 0.1107 19 6 7.7361 -11.2200 -1.3877 20 1 8.1206 -10.4233 -2.0074 21 6 7.2706 -12.3810 -1.9676 22 7 7.2953 -12.5187 -3.2754 23 14 6.6050 -13.7586 -0.8959 24 1 5.1461 -13.5683 -0.6946 25 1 6.8468 -15.0641 -1.5611 26 1 7.2931 -13.7387 0.4199 27 6 7.3658 -5.0493 1.4322 28 6 6.1951 -4.0638 1.4348 29 8 2.2870 -1.0887 -0.0062 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.9612 2.1260 0.0006 34 1 4.5113 1.2703 -0.0011 35 1 3.6611 -3.3122 -0.0006 36 1 6.5205 -3.3998 -0.5911 37 1 5.0185 -5.0452 -1.6504 38 1 4.4890 -5.6142 -0.0483 39 1 7.3408 -5.7248 -1.1322 40 1 6.2313 -7.1077 -0.9764 41 1 8.3621 -7.3693 1.9708 42 1 8.8086 -7.0827 0.2719 43 1 10.1966 -9.3499 -0.1988 44 1 9.8415 -8.8002 1.4565 45 1 10.0847 -10.5324 1.1269 46 1 8.3100 -11.8455 0.5702 47 1 6.6793 -11.1399 0.4646 48 1 6.9682 -13.3356 -3.6834 49 1 7.6994 -5.2197 2.4558 50 1 8.1871 -4.6361 0.8467 51 1 6.5198 -3.1141 1.8601 52 1 5.3785 -4.4701 2.0316 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051097380.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:21 Heat of formation + Delta-G solvation = -70.551698 kcal Electronic energy + Delta-G solvation = -32384.742302 eV Core-core repulsion = 27964.153979 eV Total energy + Delta-G solvation = -4420.588323 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 363.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.73880 -41.26985 -40.64485 -39.21153 -36.64628 -36.14391 -34.69912 -34.32477 -33.29510 -32.61429 -31.90168 -30.76151 -28.73652 -27.73564 -27.10150 -24.96617 -24.24451 -23.77307 -22.84644 -22.59592 -21.37729 -20.97841 -19.96736 -19.32566 -19.14222 -17.94943 -17.58875 -17.50611 -17.20467 -16.70364 -16.67860 -16.23373 -16.01619 -15.81344 -15.51522 -15.33994 -15.05161 -14.70085 -14.47487 -14.38441 -14.08539 -14.06290 -14.03705 -13.98618 -13.84352 -13.72564 -13.61145 -13.25835 -13.13854 -12.84629 -12.80030 -12.71138 -12.56646 -12.38860 -12.22447 -12.00951 -11.93168 -11.74894 -11.64142 -11.41294 -11.07703 -10.82791 -10.54159 -10.29699 -9.49972 -9.37171 -9.26797 -8.33753 -6.38501 -0.05108 1.31430 1.32846 1.37038 1.45403 1.53094 1.84996 2.03791 2.07216 2.25428 2.31296 2.94573 3.00819 3.51093 3.65560 3.71020 3.81741 3.88009 3.91906 4.01648 4.15273 4.23874 4.31754 4.38675 4.42693 4.49606 4.51305 4.54123 4.59933 4.66060 4.70939 4.71494 4.71949 4.79433 4.85199 4.89918 4.93085 4.95404 4.97084 5.00377 5.06718 5.12316 5.18997 5.33335 5.43501 5.46742 5.64791 5.81858 5.90468 6.11340 6.25624 6.35359 6.62503 6.76116 6.91428 7.22736 7.50346 8.83230 Molecular weight = 363.20amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.001741 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.015270 B =16083.005870 C =17142.942814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.024 3.976 3 C -0.231 4.231 4 C -0.118 4.118 5 C -0.113 4.113 6 C 0.604 3.396 7 O -0.556 6.556 8 N -0.704 5.704 9 C 0.151 3.849 10 C -0.110 4.110 11 C 0.060 3.940 12 N -0.535 5.535 13 C 0.050 3.950 14 C 0.496 3.504 15 O -0.574 6.574 16 N -0.611 5.611 17 C 0.079 3.921 18 C 0.225 3.775 19 C -0.534 4.534 20 H 0.026 0.974 21 C 0.009 3.991 22 N -0.946 5.946 23 Si 0.949 3.051 24 H -0.277 1.277 25 H -0.276 1.276 26 H -0.237 1.237 27 C 0.063 3.937 28 C -0.117 4.117 29 O -0.172 6.172 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.116 0.884 33 H 0.184 0.816 34 H 0.163 0.837 35 H 0.414 0.586 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.136 0.864 42 H 0.075 0.925 43 H 0.046 0.954 44 H 0.103 0.897 45 H 0.079 0.921 46 H 0.050 0.950 47 H 0.018 0.982 48 H 0.268 0.732 49 H 0.101 0.899 50 H 0.044 0.956 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 27.015 12.657 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.249 4.249 4 C -0.139 4.139 5 C -0.164 4.164 6 C 0.392 3.608 7 O -0.437 6.437 8 N -0.354 5.354 9 C 0.046 3.954 10 C -0.148 4.148 11 C -0.068 4.068 12 N -0.260 5.260 13 C -0.080 4.080 14 C 0.284 3.716 15 O -0.453 6.453 16 N -0.344 5.344 17 C -0.063 4.063 18 C 0.102 3.898 19 C -0.573 4.573 20 H 0.044 0.956 21 C -0.189 4.189 22 N -0.587 5.587 23 Si 0.772 3.228 24 H -0.203 1.203 25 H -0.201 1.201 26 H -0.160 1.160 27 C -0.065 4.065 28 C -0.156 4.156 29 O -0.069 6.069 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.201 0.799 34 H 0.180 0.820 35 H 0.250 0.750 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.036 0.964 48 H 0.077 0.923 49 H 0.119 0.881 50 H 0.062 0.938 51 H 0.093 0.907 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.859 26.642 12.673 30.531 hybrid contribution 0.171 -0.729 -1.015 1.261 sum -7.688 25.913 11.658 29.437 Atomic orbital electron populations 1.20672 0.81611 1.05985 1.05316 1.23714 0.95884 0.83516 0.99764 1.21952 0.91246 1.01304 1.10442 1.22233 0.99936 0.92698 0.99039 1.21845 0.82140 0.94844 1.17585 1.16705 0.86093 0.81909 0.76090 1.90850 1.23377 1.76732 1.52751 1.45923 1.11114 1.04867 1.73477 1.21042 0.87928 0.88862 0.97529 1.21708 0.98558 0.92925 1.01606 1.21980 0.96852 0.99308 0.88706 1.61531 1.38027 1.08214 1.18238 1.21985 0.93129 0.88078 1.04824 1.21216 0.86395 0.86895 0.77046 1.90622 1.17984 1.85473 1.51204 1.47972 1.09576 1.09217 1.67612 1.21943 0.78851 1.04172 1.01300 1.19320 0.94775 0.82059 0.93628 1.21567 1.41789 1.01726 0.92182 0.95560 1.25876 0.95324 1.01368 0.96333 1.70055 1.48499 1.28544 1.11559 0.85692 0.79165 0.77886 0.80049 1.20253 1.20099 1.16023 1.22120 0.96032 0.87358 1.00980 1.21888 0.98936 0.98924 0.95843 1.83998 1.15666 1.36052 1.71179 0.88143 0.89593 0.86543 0.79877 0.81959 0.74996 0.90349 0.90411 0.90573 0.94562 0.92369 0.84627 0.90698 0.93506 0.87896 0.90194 0.93240 0.96392 0.92334 0.88073 0.93788 0.90714 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 71.24 0.74 0.38 16 2 C 0.02 0.31 7.31 24.97 0.18 0.49 16 3 C -0.23 -3.02 10.77 22.07 0.24 -2.78 16 4 C -0.12 -2.18 10.62 22.39 0.24 -1.94 16 5 C -0.11 -2.40 7.13 24.07 0.17 -2.23 16 6 C 0.60 14.69 7.76 86.44 0.67 15.36 16 7 O -0.56 -16.67 16.53 -4.33 -0.07 -16.74 16 8 N -0.70 -14.75 5.08 -446.16 -2.26 -17.01 16 9 C 0.15 3.36 2.52 45.07 0.11 3.48 16 10 C -0.11 -2.72 5.57 30.65 0.17 -2.55 16 11 C 0.06 1.81 5.12 86.33 0.44 2.25 16 12 N -0.53 -14.64 4.35 -900.95 -3.92 -18.55 16 13 C 0.05 1.35 3.91 85.56 0.33 1.69 16 14 C 0.50 19.67 7.20 87.66 0.63 20.30 16 15 O -0.57 -28.40 14.29 -3.04 -0.04 -28.45 16 16 N -0.61 -24.38 2.86 -851.12 -2.43 -26.81 16 17 C 0.08 2.18 10.17 127.77 1.30 3.48 16 18 C 0.22 10.93 4.27 85.63 0.37 11.29 16 19 C -0.53 -31.60 9.94 25.60 0.25 -31.35 16 20 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 21 C 0.01 0.52 5.47 84.65 0.46 0.98 16 22 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 23 Si 0.95 44.71 27.47 68.60 1.88 46.60 16 24 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.24 -9.97 6.54 99.48 0.65 -9.32 16 27 C 0.06 1.26 5.46 86.32 0.47 1.73 16 28 C -0.12 -2.42 5.67 30.64 0.17 -2.24 16 29 O -0.17 -3.18 10.40 -5.04 -0.05 -3.23 16 30 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 34 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 35 H 0.41 7.32 8.36 -92.71 -0.78 6.55 16 36 H 0.08 1.95 7.57 -2.39 -0.02 1.94 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.06 2.30 6.06 -2.39 -0.01 2.29 16 41 H 0.14 2.63 7.55 -2.39 -0.02 2.61 16 42 H 0.08 1.80 7.90 -2.39 -0.02 1.78 16 43 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.10 1.86 6.61 -2.39 -0.02 1.85 16 45 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 46 H 0.05 2.20 6.95 -2.38 -0.02 2.18 16 47 H 0.02 0.94 6.85 -2.39 -0.02 0.93 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 49 H 0.10 1.63 8.01 -2.38 -0.02 1.61 16 50 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 52 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -84.75 422.65 0.46 -84.28 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.10 Total: 21.52 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 6.96 Total: 18.35 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -8.31 Total: -122.33 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -0.17 Total: -48.42 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.60 kcal Total: -84.75 0.46 -84.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051097380.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.730 kcal (2) G-P(sol) polarization free energy of solvation -84.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds