Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47327 * 275.10381 * 3 2 1 5 5 H 1.48507 * 109.47289 * 35.10455 * 3 2 1 6 6 H 1.48502 * 109.47576 * 155.10378 * 3 2 1 7 7 C 1.38948 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 337.18600 * 7 2 1 9 9 N 1.37095 * 120.00570 * 157.18059 * 7 2 1 10 10 C 1.46504 * 119.99773 * 320.03472 * 9 7 2 11 11 C 1.50700 * 109.46893 * 269.99192 * 10 9 7 12 12 C 1.38230 * 120.00134 * 269.72673 * 11 10 9 13 13 C 1.38243 * 119.99615 * 179.76753 * 12 11 10 14 14 C 1.38229 * 120.00123 * 0.50735 * 13 12 11 15 15 C 1.38240 * 119.99991 * 359.74736 * 14 13 12 16 16 C 1.38234 * 119.99826 * 0.02562 * 15 14 13 17 17 C 1.34777 * 120.00166 * 140.02660 * 9 7 2 18 18 O 1.21289 * 119.99942 * 184.55289 * 17 9 7 19 19 C 1.50702 * 119.99883 * 4.56104 * 17 9 7 20 20 C 1.50703 * 109.47078 * 186.07108 * 19 17 9 21 21 C 1.38326 * 120.01592 * 89.37750 * 20 19 17 22 22 Cl 1.73596 * 120.00574 * 359.70843 * 21 20 19 23 23 C 1.38359 * 119.98791 * 179.97438 * 21 20 19 24 24 C 1.38218 * 120.01176 * 0.02562 * 23 21 20 25 25 C 1.38219 * 120.02870 * 359.97438 * 24 23 21 26 26 C 1.38326 * 120.00873 * 269.36182 * 20 19 17 27 27 Cl 1.73603 * 120.01170 * 359.97438 * 26 20 19 28 28 H 0.96995 * 120.00329 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47122 * 29.99599 * 10 9 7 30 30 H 1.09008 * 109.46941 * 149.99771 * 10 9 7 31 31 H 1.08001 * 120.00065 * 0.02562 * 12 11 10 32 32 H 1.08000 * 119.99267 * 180.23498 * 13 12 11 33 33 H 1.07994 * 120.00057 * 179.72104 * 14 13 12 34 34 H 1.07995 * 119.99987 * 179.97438 * 15 14 13 35 35 H 1.08000 * 119.99863 * 179.97438 * 16 15 14 36 36 H 1.08990 * 109.47154 * 66.06739 * 19 17 9 37 37 H 1.09000 * 109.46864 * 306.06651 * 19 17 9 38 38 H 1.07997 * 119.99463 * 180.02562 * 23 21 20 39 39 H 1.08006 * 119.98887 * 180.02562 * 24 23 21 40 40 H 1.07999 * 119.99421 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.3877 2.1087 -1.3945 5 1 1.5036 2.6192 0.8052 6 1 3.5954 1.4115 0.5894 7 6 2.0089 -1.2033 0.0005 8 1 1.5322 -2.1019 0.3636 9 7 3.2993 -1.2500 -0.4599 10 6 3.6822 -0.4800 -1.6460 11 6 3.4788 -1.3224 -2.8789 12 6 4.5079 -2.1146 -3.3522 13 6 4.3197 -2.8911 -4.4804 14 6 3.1058 -2.8672 -5.1412 15 6 2.0783 -2.0709 -4.6709 16 6 2.2650 -1.2981 -3.5400 17 6 4.2158 -2.0041 0.1788 18 8 5.3749 -1.9814 -0.1779 19 6 3.8005 -2.8756 1.3359 20 6 5.0232 -3.4939 1.9633 21 6 5.6865 -2.8346 2.9825 22 17 5.1151 -1.2909 3.5340 23 6 6.8088 -3.4030 3.5585 24 6 7.2674 -4.6293 3.1153 25 6 6.6050 -5.2887 2.0970 26 6 5.4825 -4.7213 1.5205 27 17 4.6501 -5.5501 0.2422 28 1 -0.4850 0.8400 -0.0004 29 1 3.0651 0.4161 -1.7123 30 1 4.7313 -0.1939 -1.5705 31 1 5.4577 -2.1302 -2.8382 32 1 5.1226 -3.5129 -4.8480 33 1 2.9603 -3.4703 -6.0252 34 1 1.1301 -2.0519 -5.1874 35 1 1.4625 -0.6756 -3.1728 36 1 3.1380 -3.6635 0.9778 37 1 3.2782 -2.2707 2.0772 38 1 7.3265 -2.8885 4.3544 39 1 8.1432 -5.0729 3.5655 40 1 6.9641 -6.2466 1.7509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054246733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = 11.712428 kcal Electronic energy + Delta-G solvation = -27866.974913 eV Core-core repulsion = 23891.580125 eV Total energy + Delta-G solvation = -3975.394788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.78528 -39.02247 -37.95469 -36.51399 -36.02191 -35.00496 -32.70879 -32.15405 -30.91929 -30.50048 -30.33873 -27.66987 -25.65200 -24.60823 -22.70369 -21.97852 -21.87513 -20.82610 -19.05600 -17.48691 -16.87132 -16.42929 -16.08174 -15.90392 -15.55152 -15.11618 -14.69119 -14.38707 -14.19070 -14.05716 -13.95027 -13.40082 -13.09262 -12.88550 -12.72227 -12.65365 -12.25607 -12.11391 -12.03921 -11.83268 -11.79912 -11.51444 -11.20459 -10.96322 -10.94024 -10.78780 -10.58448 -10.50636 -10.45916 -10.21002 -10.01599 -9.28291 -8.85607 -8.58839 -8.54074 -8.37516 -8.14895 -7.81933 -6.53853 -4.13257 1.10839 1.20312 1.85217 1.95222 2.08559 2.50221 3.01121 3.18659 3.28390 3.52775 3.69736 4.07723 4.18343 4.59355 4.78355 4.88866 4.95493 4.98714 5.27847 5.37458 5.38804 5.47203 5.49783 5.61365 5.70914 5.85698 5.87352 6.00294 6.09612 6.15302 6.20280 6.22723 6.32980 6.37153 6.46738 6.53654 6.62063 6.66141 6.97880 7.00613 7.27486 7.31503 7.54912 8.03077 8.19883 8.90683 9.29243 9.63800 10.56389 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.004992 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.943358 B = 5608.020394 C = 7688.212374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.075 3.925 3 Si 0.860 3.140 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.258 1.258 7 C -0.344 4.344 8 H 0.103 0.897 9 N -0.458 5.458 10 C 0.138 3.862 11 C -0.082 4.082 12 C -0.101 4.101 13 C -0.132 4.132 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.090 4.090 17 C 0.501 3.499 18 O -0.586 6.586 19 C -0.098 4.098 20 C -0.030 4.030 21 C -0.016 4.016 22 Cl -0.053 7.053 23 C -0.109 4.109 24 C -0.107 4.107 25 C -0.109 4.109 26 C -0.013 4.013 27 Cl -0.055 7.055 28 H 0.275 0.725 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.149 -7.267 1.855 11.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.133 4.133 3 Si 0.687 3.313 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.181 1.181 7 C -0.471 4.471 8 H 0.120 0.880 9 N -0.178 5.178 10 C 0.015 3.985 11 C -0.084 4.084 12 C -0.119 4.119 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.108 4.108 17 C 0.290 3.710 18 O -0.470 6.470 19 C -0.137 4.137 20 C -0.032 4.032 21 C -0.043 4.043 22 Cl -0.024 7.024 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.040 4.040 27 Cl -0.026 7.026 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.379 -7.057 1.627 11.849 hybrid contribution -0.076 0.951 -0.085 0.958 sum 9.303 -6.106 1.542 11.234 Atomic orbital electron populations 1.69779 1.06240 1.28198 1.44493 1.25271 0.94902 0.98198 0.94950 0.87174 0.81741 0.84003 0.78409 1.19928 1.21205 1.18144 1.19008 0.86852 0.96619 1.44636 0.87979 1.43598 1.09762 1.42739 1.21734 1.20585 1.00833 0.93466 0.83569 1.20273 0.93819 0.98354 0.95921 1.21178 0.99295 0.95770 0.95681 1.21020 0.97310 1.00053 0.96627 1.21008 0.93905 0.99838 1.00029 1.21063 0.98626 0.97772 0.97260 1.21163 0.96770 0.98626 0.94265 1.19883 0.84792 0.82870 0.83455 1.90547 1.18458 1.69325 1.68656 1.20613 0.94390 1.00153 0.98584 1.19306 0.97248 0.92506 0.94128 1.20648 0.96850 0.88981 0.97840 1.98390 1.88385 1.27162 1.88452 1.21054 0.95144 0.96043 1.00559 1.20927 1.00017 0.94623 0.97007 1.21048 0.94228 1.00722 0.96837 1.20616 0.95939 0.94052 0.93407 1.98377 1.77556 1.77267 1.49431 0.91458 0.90842 0.90384 0.85829 0.86891 0.86983 0.86668 0.85720 0.88018 0.87085 0.84697 0.84582 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.52 13.96 55.50 0.77 -21.75 16 2 C 0.07 1.90 5.28 -17.47 -0.09 1.81 16 3 Si 0.86 19.88 25.22 -169.99 -4.29 15.59 16 4 H -0.27 -6.07 6.67 56.52 0.38 -5.69 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.34 -8.59 8.87 -14.94 -0.13 -8.72 16 8 H 0.10 2.68 7.48 -52.48 -0.39 2.29 16 9 N -0.46 -10.72 2.10 -116.09 -0.24 -10.97 16 10 C 0.14 3.06 4.39 -5.19 -0.02 3.03 16 11 C -0.08 -1.69 5.46 -104.63 -0.57 -2.26 16 12 C -0.10 -1.91 9.70 -39.58 -0.38 -2.29 16 13 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 14 C -0.13 -2.02 10.05 -39.58 -0.40 -2.42 16 15 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 16 C -0.09 -1.76 9.70 -39.58 -0.38 -2.14 16 17 C 0.50 11.25 7.61 -10.98 -0.08 11.17 16 18 O -0.59 -13.88 15.38 5.55 0.09 -13.79 16 19 C -0.10 -1.93 3.70 -29.03 -0.11 -2.04 16 20 C -0.03 -0.52 4.39 -104.56 -0.46 -0.98 16 21 C -0.02 -0.26 6.31 -39.50 -0.25 -0.51 16 22 Cl -0.05 -0.88 27.31 -51.86 -1.42 -2.30 16 23 C -0.11 -1.40 9.83 -39.54 -0.39 -1.79 16 24 C -0.11 -1.21 10.04 -39.60 -0.40 -1.61 16 25 C -0.11 -1.39 9.83 -39.54 -0.39 -1.78 16 26 C -0.01 -0.21 6.31 -39.50 -0.25 -0.46 16 27 Cl -0.06 -0.88 27.28 -51.86 -1.41 -2.30 16 28 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.07 1.66 3.58 -51.93 -0.19 1.47 16 30 H 0.08 1.71 7.31 -51.92 -0.38 1.33 16 31 H 0.12 2.40 7.83 -52.49 -0.41 1.99 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 34 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.12 2.56 8.06 -52.49 -0.42 2.13 16 36 H 0.10 1.98 6.79 -51.93 -0.35 1.62 16 37 H 0.11 2.22 6.64 -51.93 -0.34 1.88 16 38 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -28.31 368.05 -10.25 -38.55 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -4.19 Total: 7.54 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -5.10 Total: -16.13 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.53 Total: -32.72 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.29 Total: 15.59 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -2.83 Total: -4.59 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.31 -10.25 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.266 kcal (2) G-P(sol) polarization free energy of solvation -28.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds