Wall clock time and date at job start Tue Mar 31 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47327 * 275.10381 * 3 2 1 5 5 H 1.48507 * 109.47289 * 35.10455 * 3 2 1 6 6 H 1.48502 * 109.47576 * 155.10378 * 3 2 1 7 7 C 1.38948 * 120.00454 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 337.18600 * 7 2 1 9 9 N 1.37095 * 120.00570 * 157.18059 * 7 2 1 10 10 C 1.46504 * 119.99773 * 320.03472 * 9 7 2 11 11 C 1.50700 * 109.46893 * 269.99192 * 10 9 7 12 12 C 1.38230 * 120.00134 * 269.72673 * 11 10 9 13 13 C 1.38243 * 119.99615 * 179.76753 * 12 11 10 14 14 C 1.38229 * 120.00123 * 0.50735 * 13 12 11 15 15 C 1.38240 * 119.99991 * 359.74736 * 14 13 12 16 16 C 1.38234 * 119.99826 * 0.02562 * 15 14 13 17 17 C 1.34777 * 120.00166 * 140.02660 * 9 7 2 18 18 O 1.21289 * 119.99942 * 184.55289 * 17 9 7 19 19 C 1.50702 * 119.99883 * 4.56104 * 17 9 7 20 20 C 1.50703 * 109.47078 * 186.07108 * 19 17 9 21 21 C 1.38326 * 120.01592 * 89.37750 * 20 19 17 22 22 Cl 1.73596 * 120.00574 * 359.70843 * 21 20 19 23 23 C 1.38359 * 119.98791 * 179.97438 * 21 20 19 24 24 C 1.38218 * 120.01176 * 0.02562 * 23 21 20 25 25 C 1.38219 * 120.02870 * 359.97438 * 24 23 21 26 26 C 1.38326 * 120.00873 * 269.36182 * 20 19 17 27 27 Cl 1.73603 * 120.01170 * 359.97438 * 26 20 19 28 28 H 0.96995 * 120.00329 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47122 * 29.99599 * 10 9 7 30 30 H 1.09008 * 109.46941 * 149.99771 * 10 9 7 31 31 H 1.08001 * 120.00065 * 0.02562 * 12 11 10 32 32 H 1.08000 * 119.99267 * 180.23498 * 13 12 11 33 33 H 1.07994 * 120.00057 * 179.72104 * 14 13 12 34 34 H 1.07995 * 119.99987 * 179.97438 * 15 14 13 35 35 H 1.08000 * 119.99863 * 179.97438 * 16 15 14 36 36 H 1.08990 * 109.47154 * 66.06739 * 19 17 9 37 37 H 1.09000 * 109.46864 * 306.06651 * 19 17 9 38 38 H 1.07997 * 119.99463 * 180.02562 * 23 21 20 39 39 H 1.08006 * 119.98887 * 180.02562 * 24 23 21 40 40 H 1.07999 * 119.99421 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.3877 2.1087 -1.3945 5 1 1.5036 2.6192 0.8052 6 1 3.5954 1.4115 0.5894 7 6 2.0089 -1.2033 0.0005 8 1 1.5322 -2.1019 0.3636 9 7 3.2993 -1.2500 -0.4599 10 6 3.6822 -0.4800 -1.6460 11 6 3.4788 -1.3224 -2.8789 12 6 4.5079 -2.1146 -3.3522 13 6 4.3197 -2.8911 -4.4804 14 6 3.1058 -2.8672 -5.1412 15 6 2.0783 -2.0709 -4.6709 16 6 2.2650 -1.2981 -3.5400 17 6 4.2158 -2.0041 0.1788 18 8 5.3749 -1.9814 -0.1779 19 6 3.8005 -2.8756 1.3359 20 6 5.0232 -3.4939 1.9633 21 6 5.6865 -2.8346 2.9825 22 17 5.1151 -1.2909 3.5340 23 6 6.8088 -3.4030 3.5585 24 6 7.2674 -4.6293 3.1153 25 6 6.6050 -5.2887 2.0970 26 6 5.4825 -4.7213 1.5205 27 17 4.6501 -5.5501 0.2422 28 1 -0.4850 0.8400 -0.0004 29 1 3.0651 0.4161 -1.7123 30 1 4.7313 -0.1939 -1.5705 31 1 5.4577 -2.1302 -2.8382 32 1 5.1226 -3.5129 -4.8480 33 1 2.9603 -3.4703 -6.0252 34 1 1.1301 -2.0519 -5.1874 35 1 1.4625 -0.6756 -3.1728 36 1 3.1380 -3.6635 0.9778 37 1 3.2782 -2.2707 2.0772 38 1 7.3265 -2.8885 4.3544 39 1 8.1432 -5.0729 3.5655 40 1 6.9641 -6.2466 1.7509 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054246733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:40 Heat of formation + Delta-G solvation = -0.354923 kcal Electronic energy + Delta-G solvation = -27867.498193 eV Core-core repulsion = 23891.580125 eV Total energy + Delta-G solvation = -3975.918068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 363.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26071 -40.36825 -39.46270 -37.72351 -37.21378 -36.81436 -34.21609 -33.90769 -32.44961 -31.73413 -31.57592 -29.06571 -27.37005 -26.37157 -23.79851 -23.38444 -23.11911 -22.24593 -20.88975 -19.08185 -18.16225 -18.09282 -17.48576 -17.38200 -17.12603 -16.39464 -16.15247 -15.85808 -15.73709 -15.55581 -15.30983 -14.80840 -14.56310 -14.31655 -14.24923 -14.19046 -13.85642 -13.55385 -13.36838 -13.26584 -13.10016 -13.06098 -12.84867 -12.45426 -12.39314 -12.07776 -12.04932 -12.00996 -11.79514 -11.77550 -11.71533 -11.15167 -10.60508 -9.83270 -9.77674 -9.70368 -9.67707 -9.59815 -8.53774 -6.13581 0.02691 0.08216 0.44291 0.54582 0.90670 1.13246 1.26578 1.31966 1.37675 1.89625 2.14639 2.38948 2.63688 2.97246 3.09141 3.60005 3.83586 3.88066 3.92041 3.97827 4.17239 4.23232 4.26217 4.31312 4.35267 4.45139 4.49459 4.54320 4.55444 4.72960 4.78016 4.85129 5.12529 5.13451 5.17615 5.20240 5.22304 5.40963 5.60753 5.62552 5.65184 5.80855 6.05942 6.16349 6.23561 6.94913 7.40133 7.77280 8.60199 Molecular weight = 363.05amu Principal moments of inertia in cm(-1) A = 0.009065 B = 0.004992 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.943358 B = 5608.020394 C = 7688.212374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.047 3.953 3 Si 0.902 3.098 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.468 5.468 10 C 0.138 3.862 11 C -0.104 4.104 12 C -0.114 4.114 13 C -0.126 4.126 14 C -0.118 4.118 15 C -0.127 4.127 16 C -0.111 4.111 17 C 0.500 3.500 18 O -0.598 6.598 19 C -0.089 4.089 20 C -0.061 4.061 21 C -0.035 4.035 22 Cl -0.071 7.071 23 C -0.105 4.105 24 C -0.087 4.087 25 C -0.104 4.104 26 C -0.030 4.030 27 Cl -0.067 7.067 28 H 0.279 0.721 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.144 0.856 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.163 0.837 39 H 0.185 0.815 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.394 -9.063 1.184 14.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.158 4.158 3 Si 0.728 3.272 4 H -0.187 1.187 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.098 0.902 9 N -0.189 5.189 10 C 0.016 3.984 11 C -0.106 4.106 12 C -0.132 4.132 13 C -0.144 4.144 14 C -0.136 4.136 15 C -0.145 4.145 16 C -0.130 4.130 17 C 0.291 3.709 18 O -0.483 6.483 19 C -0.128 4.128 20 C -0.063 4.063 21 C -0.062 4.062 22 Cl -0.042 7.042 23 C -0.124 4.124 24 C -0.105 4.105 25 C -0.123 4.123 26 C -0.057 4.057 27 Cl -0.038 7.038 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.162 0.838 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 11.627 -8.850 0.951 14.643 hybrid contribution -0.670 1.377 0.108 1.535 sum 10.957 -7.474 1.058 13.305 Atomic orbital electron populations 1.69821 1.07133 1.28983 1.46158 1.25624 0.95246 1.00067 0.94898 0.86498 0.80081 0.81698 0.78893 1.18682 1.20665 1.19443 1.18803 0.87374 0.95897 1.44335 0.90198 1.43704 1.09327 1.43325 1.22552 1.20549 1.00019 0.93583 0.84292 1.20168 0.95011 0.99513 0.95866 1.21159 0.98431 0.96662 0.96994 1.21385 0.98684 0.99096 0.95255 1.21459 0.92674 0.98842 1.00615 1.21383 1.00271 0.96761 0.96085 1.21122 0.96003 0.99931 0.95923 1.20328 0.84445 0.82455 0.83703 1.90512 1.18927 1.69659 1.69161 1.20438 0.95807 0.99337 0.97237 1.19209 0.97363 0.93915 0.95788 1.20887 0.98212 0.88629 0.98454 1.98377 1.88804 1.28469 1.88576 1.21475 0.93709 0.96604 1.00574 1.21499 1.00354 0.93294 0.95371 1.21486 0.92679 1.01700 0.96418 1.20844 0.97168 0.93879 0.93793 1.98365 1.78057 1.77273 1.50089 0.91050 0.91766 0.90983 0.87002 0.83778 0.82819 0.84075 0.87756 0.88595 0.88248 0.81921 0.79782 0.81763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.30 13.96 21.66 0.30 -48.00 16 2 C 0.05 2.48 5.28 84.93 0.45 2.93 16 3 Si 0.90 42.20 25.22 68.60 1.73 43.93 16 4 H -0.26 -11.60 6.67 99.48 0.66 -10.93 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.34 -17.64 8.87 84.04 0.75 -16.89 16 8 H 0.08 4.47 7.48 -2.91 -0.02 4.45 16 9 N -0.47 -22.87 2.10 -639.58 -1.35 -24.22 16 10 C 0.14 6.35 4.39 85.63 0.38 6.73 16 11 C -0.10 -4.38 5.46 -19.87 -0.11 -4.49 16 12 C -0.11 -4.30 9.70 22.27 0.22 -4.08 16 13 C -0.13 -3.84 10.05 22.27 0.22 -3.62 16 14 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 15 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 16 C -0.11 -4.41 9.70 22.27 0.22 -4.19 16 17 C 0.50 23.34 7.61 87.66 0.67 24.01 16 18 O -0.60 -29.07 15.38 -3.06 -0.05 -29.12 16 19 C -0.09 -3.66 3.70 29.10 0.11 -3.55 16 20 C -0.06 -2.14 4.39 -19.82 -0.09 -2.23 16 21 C -0.03 -1.10 6.31 22.32 0.14 -0.96 16 22 Cl -0.07 -2.41 27.31 -2.72 -0.07 -2.48 16 23 C -0.11 -2.39 9.83 22.29 0.22 -2.17 16 24 C -0.09 -1.58 10.04 22.26 0.22 -1.36 16 25 C -0.10 -2.32 9.83 22.30 0.22 -2.10 16 26 C -0.03 -0.92 6.31 22.32 0.14 -0.78 16 27 Cl -0.07 -2.11 27.28 -2.72 -0.07 -2.18 16 28 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 29 H 0.06 3.01 3.58 -2.39 -0.01 3.00 16 30 H 0.07 3.31 7.31 -2.38 -0.02 3.29 16 31 H 0.11 4.42 7.83 -2.91 -0.02 4.40 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 35 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.10 3.96 6.79 -2.39 -0.02 3.95 16 37 H 0.10 4.24 6.64 -2.39 -0.02 4.23 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 40 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -64.44 368.05 5.73 -58.71 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.04 Total: 23.02 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 4.20 Total: -19.65 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: -1.04 Total: -72.22 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.73 Total: 43.93 kcal Atomic # 17 Polarization: -4.52 SS G_CDS: -0.15 Total: -4.67 kcal Total: -64.44 5.73 -58.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054246733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.359 kcal (2) G-P(sol) polarization free energy of solvation -64.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds