Wall clock time and date at job start Tue Mar 31 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 120.00497 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00158 * 3 2 1 5 5 H 1.48500 * 109.46775 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47206 * 119.99772 * 3 2 1 7 7 C 1.38796 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00431 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00328 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00075 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99609 * 180.02562 * 11 10 9 14 14 C 1.40136 * 119.99766 * 175.56962 * 13 11 10 15 15 C 1.39381 * 120.42195 * 35.11154 * 14 13 11 16 16 C 1.38313 * 118.42731 * 180.22920 * 15 14 13 17 17 C 1.38928 * 119.18236 * 359.52317 * 16 15 14 18 18 O 1.35742 * 119.60849 * 180.21033 * 17 16 15 19 19 C 1.35916 * 117.99695 * 185.24306 * 18 17 16 20 20 C 1.38748 * 120.04262 * 256.05609 * 19 18 17 21 21 C 1.38136 * 119.95196 * 179.76488 * 20 19 18 22 22 C 1.38366 * 120.04596 * 0.49113 * 21 20 19 23 23 Cl 1.73603 * 119.95711 * 179.74534 * 22 21 20 24 24 C 1.38375 * 120.08927 * 359.76184 * 22 21 20 25 25 C 1.38136 * 120.04385 * 0.02562 * 24 22 21 26 26 N 1.32225 * 120.77826 * 0.48416 * 17 16 15 27 27 C 1.31938 * 121.71936 * 359.74877 * 26 17 16 28 28 H 0.97001 * 119.99570 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46971 * 59.99680 * 10 9 7 30 30 H 1.09002 * 109.46841 * 300.00220 * 10 9 7 31 31 H 0.97003 * 120.00510 * 355.57328 * 13 11 10 32 32 H 1.07999 * 120.78420 * 359.95038 * 15 14 13 33 33 H 1.07995 * 120.40808 * 179.72715 * 16 15 14 34 34 H 1.08005 * 120.02039 * 359.97438 * 20 19 18 35 35 H 1.07994 * 119.97435 * 180.24864 * 21 20 19 36 36 H 1.07996 * 119.97985 * 179.97438 * 24 22 21 37 37 H 1.07995 * 120.02126 * 179.97438 * 25 24 22 38 38 H 1.08004 * 119.63254 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3551 -7.6533 0.0935 15 6 1.1485 -8.0011 -0.5115 16 6 0.7025 -9.3046 -0.3894 17 6 1.4712 -10.2201 0.3185 18 8 1.0437 -11.5027 0.4401 19 6 1.7639 -12.3432 1.2289 20 6 2.5982 -13.2912 0.6541 21 6 3.3329 -14.1412 1.4577 22 6 3.2297 -14.0545 2.8348 23 17 4.1492 -15.1283 3.8424 24 6 2.3943 -13.1132 3.4099 25 6 1.6612 -12.2584 2.6099 26 7 2.6115 -9.8554 0.8798 27 6 3.0658 -8.6201 0.7882 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7315 0.8905 30 1 3.1243 -3.7315 -0.8895 31 1 3.7988 -6.1853 -0.0638 32 1 0.5733 -7.2690 -1.0587 33 1 -0.2302 -9.6079 -0.8416 34 1 2.6755 -13.3622 -0.4208 35 1 3.9854 -14.8766 1.0107 36 1 2.3148 -13.0473 4.4849 37 1 1.0089 -11.5241 3.0592 38 1 4.0019 -8.3592 1.2596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057272838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:50 Heat of formation + Delta-G solvation = -1.120310 kcal Electronic energy + Delta-G solvation = -25199.328992 eV Core-core repulsion = 21159.995530 eV Total energy + Delta-G solvation = -4039.333462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.043 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42570 -40.31338 -39.11111 -37.94059 -36.66095 -34.80210 -32.53130 -32.50659 -31.60965 -30.95081 -29.91618 -28.26415 -25.57467 -24.63235 -23.58483 -23.34813 -22.44394 -20.64213 -19.28293 -18.29953 -17.67849 -17.47972 -17.17096 -16.75795 -16.44517 -15.60795 -15.11232 -14.87468 -14.76705 -14.60982 -14.54316 -14.29135 -14.02462 -13.81281 -13.56819 -13.49088 -13.07000 -12.81909 -12.68706 -12.62506 -12.27024 -11.76392 -11.66952 -11.24088 -11.13354 -11.09545 -10.85442 -10.68850 -10.11789 -9.95096 -9.87546 -9.54455 -9.41977 -9.13446 -9.00107 -8.37343 -8.15696 -6.61137 -6.29597 -4.01821 0.48424 0.80111 0.86573 1.07320 1.67934 2.53890 2.72438 2.81433 3.18635 3.20829 3.24466 3.33426 3.49048 3.57368 4.04076 4.12166 4.32780 4.36913 4.59291 4.73244 4.74403 4.87676 4.91058 4.95732 5.06036 5.15274 5.40563 5.42423 5.43576 5.51014 5.66789 5.69951 5.73431 5.88293 5.90942 5.97458 6.05330 6.16965 6.55296 7.10701 7.29968 7.51719 7.59209 8.23448 8.27003 9.15860 10.77727 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.001481 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.517199 B =18904.388135 C =19409.955200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.056 6.056 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.498 6.498 13 N -0.674 5.674 14 C 0.081 3.919 15 C -0.046 4.046 16 C -0.157 4.157 17 C 0.288 3.712 18 O -0.250 6.250 19 C 0.109 3.891 20 C -0.105 4.105 21 C -0.097 4.097 22 C -0.036 4.036 23 Cl -0.069 7.069 24 C -0.096 4.096 25 C -0.105 4.105 26 N -0.509 5.509 27 C 0.111 3.889 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.413 0.587 32 H 0.162 0.838 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.449 -28.086 2.524 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.370 6.370 13 N -0.322 5.322 14 C -0.016 4.016 15 C -0.073 4.073 16 C -0.178 4.178 17 C 0.110 3.890 18 O -0.156 6.156 19 C 0.067 3.933 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.063 4.063 23 Cl -0.040 7.040 24 C -0.115 4.115 25 C -0.124 4.124 26 N -0.231 5.231 27 C -0.048 4.048 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.249 0.751 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.613 -29.059 2.969 29.949 hybrid contribution 2.184 1.910 -0.230 2.911 sum 8.798 -27.149 2.739 28.670 Atomic orbital electron populations 1.69999 1.05972 1.27724 1.46486 1.24992 0.95041 0.99077 0.94362 0.86206 0.79243 0.81123 0.78845 1.19886 1.20761 1.19898 1.22811 0.94903 0.91484 1.59489 0.90834 1.85422 1.04342 0.96384 1.96785 1.23545 1.07099 0.94340 1.05471 1.20604 0.86457 0.86311 0.74523 1.90701 1.15290 1.85139 1.45891 1.43573 1.11089 1.03052 1.74483 1.18720 0.97096 0.86091 0.99734 1.21706 0.95081 0.95103 0.95410 1.21012 1.01922 0.91588 1.03316 1.19809 0.90265 0.84060 0.94852 1.84611 1.49318 1.17413 1.64300 1.18559 0.93968 0.91668 0.89140 1.21141 0.94268 0.96092 1.00913 1.20886 0.99763 0.99803 0.91169 1.20964 0.97984 0.95693 0.91666 1.98381 1.72888 1.63787 1.68931 1.20908 0.95559 0.94238 1.00747 1.21310 0.99284 0.99327 0.92474 1.67240 1.13592 1.19711 1.22536 1.22184 1.00242 0.86752 0.95638 0.92020 0.88639 0.88664 0.75116 0.82021 0.83502 0.84342 0.84265 0.84330 0.84601 0.82050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.22 55.49 0.73 -24.63 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 20.74 29.55 -169.99 -5.02 15.71 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.48 16 9 S -0.06 -1.43 20.57 -107.50 -2.21 -3.64 16 10 C -0.15 -2.80 6.16 36.00 0.22 -2.57 16 11 C 0.53 8.84 7.70 -10.99 -0.08 8.76 16 12 O -0.50 -10.03 13.36 5.55 0.07 -9.96 16 13 N -0.67 -8.01 5.35 -9.74 -0.05 -8.06 16 14 C 0.08 0.98 6.32 -83.48 -0.53 0.45 16 15 C -0.05 -0.59 8.80 -39.13 -0.34 -0.93 16 16 C -0.16 -1.81 10.04 -39.30 -0.39 -2.20 16 17 C 0.29 3.42 7.39 -17.13 -0.13 3.30 16 18 O -0.25 -2.83 9.97 -3.18 -0.03 -2.86 16 19 C 0.11 1.10 5.08 -39.21 -0.20 0.91 16 20 C -0.11 -0.89 9.99 -39.43 -0.39 -1.28 16 21 C -0.10 -0.73 9.82 -39.57 -0.39 -1.12 16 22 C -0.04 -0.29 6.32 -39.48 -0.25 -0.54 16 23 Cl -0.07 -0.52 28.95 -51.86 -1.50 -2.02 16 24 C -0.10 -0.77 9.82 -39.57 -0.39 -1.16 16 25 C -0.11 -0.97 9.74 -39.43 -0.38 -1.36 16 26 N -0.51 -6.05 9.20 -13.17 -0.12 -6.17 16 27 C 0.11 1.19 11.11 -17.35 -0.19 0.99 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.10 1.59 8.14 -51.92 -0.42 1.16 16 30 H 0.10 1.56 8.14 -51.91 -0.42 1.14 16 31 H 0.41 3.40 8.83 -40.82 -0.36 3.04 16 32 H 0.16 2.30 6.34 -52.49 -0.33 1.97 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 38 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 LS Contribution 370.69 15.07 5.59 5.59 Total: -1.00 -33.19 370.69 -9.42 -42.61 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -3.62 Total: 2.64 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.25 Total: -9.21 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.56 Total: -38.86 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.04 Total: -12.82 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.19 -9.42 -42.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057272838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.489 kcal (2) G-P(sol) polarization free energy of solvation -33.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds