Wall clock time and date at job start Tue Mar 31 2020 06:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 120.00497 * 2 1 4 4 H 1.48496 * 109.47181 * 240.00158 * 3 2 1 5 5 H 1.48500 * 109.46775 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47206 * 119.99772 * 3 2 1 7 7 C 1.38796 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00431 * 179.97438 * 7 2 1 9 9 S 1.76204 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00328 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47116 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00075 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99609 * 180.02562 * 11 10 9 14 14 C 1.40136 * 119.99766 * 175.56962 * 13 11 10 15 15 C 1.39381 * 120.42195 * 35.11154 * 14 13 11 16 16 C 1.38313 * 118.42731 * 180.22920 * 15 14 13 17 17 C 1.38928 * 119.18236 * 359.52317 * 16 15 14 18 18 O 1.35742 * 119.60849 * 180.21033 * 17 16 15 19 19 C 1.35916 * 117.99695 * 185.24306 * 18 17 16 20 20 C 1.38748 * 120.04262 * 256.05609 * 19 18 17 21 21 C 1.38136 * 119.95196 * 179.76488 * 20 19 18 22 22 C 1.38366 * 120.04596 * 0.49113 * 21 20 19 23 23 Cl 1.73603 * 119.95711 * 179.74534 * 22 21 20 24 24 C 1.38375 * 120.08927 * 359.76184 * 22 21 20 25 25 C 1.38136 * 120.04385 * 0.02562 * 24 22 21 26 26 N 1.32225 * 120.77826 * 0.48416 * 17 16 15 27 27 C 1.31938 * 121.71936 * 359.74877 * 26 17 16 28 28 H 0.97001 * 119.99570 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.46971 * 59.99680 * 10 9 7 30 30 H 1.09002 * 109.46841 * 300.00220 * 10 9 7 31 31 H 0.97003 * 120.00510 * 355.57328 * 13 11 10 32 32 H 1.07999 * 120.78420 * 359.95038 * 15 14 13 33 33 H 1.07995 * 120.40808 * 179.72715 * 16 15 14 34 34 H 1.08005 * 120.02039 * 359.97438 * 20 19 18 35 35 H 1.07994 * 119.97435 * 180.24864 * 21 20 19 36 36 H 1.07996 * 119.97985 * 179.97438 * 24 22 21 37 37 H 1.07995 * 120.02126 * 179.97438 * 25 24 22 38 38 H 1.08004 * 119.63254 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2855 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2022 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9871 -5.3028 -0.0001 12 8 0.7907 -5.5023 0.0000 13 7 2.8438 -6.3432 0.0003 14 6 2.3551 -7.6533 0.0935 15 6 1.1485 -8.0011 -0.5115 16 6 0.7025 -9.3046 -0.3894 17 6 1.4712 -10.2201 0.3185 18 8 1.0437 -11.5027 0.4401 19 6 1.7639 -12.3432 1.2289 20 6 2.5982 -13.2912 0.6541 21 6 3.3329 -14.1412 1.4577 22 6 3.2297 -14.0545 2.8348 23 17 4.1492 -15.1283 3.8424 24 6 2.3943 -13.1132 3.4099 25 6 1.6612 -12.2584 2.6099 26 7 2.6115 -9.8554 0.8798 27 6 3.0658 -8.6201 0.7882 28 1 -0.4849 0.8401 0.0004 29 1 3.1243 -3.7315 0.8905 30 1 3.1243 -3.7315 -0.8895 31 1 3.7988 -6.1853 -0.0638 32 1 0.5733 -7.2690 -1.0587 33 1 -0.2302 -9.6079 -0.8416 34 1 2.6755 -13.3622 -0.4208 35 1 3.9854 -14.8766 1.0107 36 1 2.3148 -13.0473 4.4849 37 1 1.0089 -11.5241 3.0592 38 1 4.0019 -8.3592 1.2596 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057272838.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:49 Heat of formation + Delta-G solvation = -22.216210 kcal Electronic energy + Delta-G solvation = -25200.243779 eV Core-core repulsion = 21159.995530 eV Total energy + Delta-G solvation = -4040.248249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 364.043 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.30762 -41.30543 -40.06216 -38.76851 -37.29547 -35.94165 -34.57532 -33.46620 -32.23809 -31.99587 -30.84546 -29.36954 -27.64579 -25.51820 -24.47051 -24.02952 -23.26670 -21.81291 -20.17901 -19.86802 -18.80231 -18.49398 -18.05646 -17.64823 -17.45093 -16.86720 -16.67947 -16.12284 -16.04699 -15.58140 -15.47626 -15.24997 -15.02512 -14.65252 -14.61816 -14.49116 -14.33280 -13.96449 -13.68720 -13.53894 -13.31611 -13.16186 -12.86212 -12.64031 -12.43797 -12.36795 -11.90823 -11.76706 -11.65651 -11.27155 -11.11955 -10.90540 -10.50477 -10.28172 -10.16696 -9.67759 -9.11317 -8.65603 -8.34161 -6.11897 -0.21655 -0.04431 0.11754 0.18765 1.06442 1.22928 1.44378 1.44941 1.48845 1.55408 1.80051 2.11390 2.27678 2.63712 2.66272 3.00657 3.20631 3.28561 3.66715 3.72237 3.77757 3.82299 3.94835 4.02557 4.16482 4.28725 4.29624 4.37126 4.51390 4.59507 4.66645 4.84216 4.92564 4.96643 5.10941 5.11463 5.24453 5.41957 5.43239 5.60947 6.20353 6.25760 6.31271 6.70001 7.04755 7.07925 8.74503 Molecular weight = 364.04amu Principal moments of inertia in cm(-1) A = 0.026647 B = 0.001481 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.517199 B =18904.388135 C =19409.955200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.086 0.914 9 S -0.147 6.147 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.541 6.541 13 N -0.647 5.647 14 C 0.066 3.934 15 C -0.057 4.057 16 C -0.161 4.161 17 C 0.286 3.714 18 O -0.255 6.255 19 C 0.085 3.915 20 C -0.107 4.107 21 C -0.094 4.094 22 C -0.041 4.041 23 Cl -0.063 7.063 24 C -0.097 4.097 25 C -0.114 4.114 26 N -0.517 5.517 27 C 0.125 3.875 28 H 0.271 0.729 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.433 0.567 32 H 0.143 0.857 33 H 0.160 0.840 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -29.127 2.954 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.104 0.896 9 S 0.081 5.919 10 C -0.280 4.280 11 C 0.325 3.675 12 O -0.417 6.417 13 N -0.296 5.296 14 C -0.031 4.031 15 C -0.085 4.085 16 C -0.182 4.182 17 C 0.109 3.891 18 O -0.162 6.162 19 C 0.043 3.957 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.067 4.067 23 Cl -0.034 7.034 24 C -0.115 4.115 25 C -0.133 4.133 26 N -0.238 5.238 27 C -0.034 4.034 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.136 0.864 31 H 0.273 0.727 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.169 0.831 35 H 0.179 0.821 36 H 0.171 0.829 37 H 0.152 0.848 38 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 9.577 -30.149 3.397 31.815 hybrid contribution 1.337 1.995 -0.331 2.424 sum 10.914 -28.154 3.066 30.351 Atomic orbital electron populations 1.70169 1.07948 1.28648 1.47970 1.26088 0.95910 1.03251 0.93764 0.85035 0.77817 0.75863 0.79498 1.18631 1.20646 1.18702 1.23188 0.95466 0.91954 1.58895 0.89641 1.85592 1.10112 0.99145 1.97096 1.23359 1.03916 0.93141 1.07604 1.20291 0.86171 0.86601 0.74444 1.90704 1.17168 1.85587 1.48212 1.43130 1.11540 1.02062 1.72914 1.18793 0.97371 0.86093 1.00829 1.21634 0.95589 0.95331 0.95942 1.21101 1.02505 0.91148 1.03430 1.19954 0.90242 0.84464 0.94458 1.84607 1.49764 1.17258 1.64543 1.18832 0.95140 0.92239 0.89475 1.21313 0.93845 0.95688 1.01744 1.21136 0.99444 0.99698 0.90950 1.21109 0.97890 0.95652 0.92097 1.98386 1.72682 1.63527 1.68808 1.21073 0.95126 0.93865 1.01464 1.21360 0.99710 0.99821 0.92414 1.67340 1.13677 1.20089 1.22727 1.22628 1.00684 0.85799 0.94251 0.92039 0.86451 0.86351 0.72680 0.83911 0.82220 0.83129 0.82103 0.82884 0.84820 0.78798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.54 13.22 21.65 0.29 -54.26 16 2 C 0.01 0.82 5.49 84.86 0.47 1.28 16 3 Si 1.00 42.21 29.55 68.60 2.03 44.23 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.55 -29.86 9.50 67.95 0.65 -29.21 16 8 H 0.09 4.27 7.80 -2.91 -0.02 4.25 16 9 S -0.15 -7.66 20.57 -56.49 -1.16 -8.82 16 10 C -0.13 -4.53 6.16 71.23 0.44 -4.09 16 11 C 0.54 17.44 7.70 87.66 0.68 18.12 16 12 O -0.54 -22.32 13.36 -3.06 -0.04 -22.37 16 13 N -0.65 -14.13 5.35 -303.11 -1.62 -15.76 16 14 C 0.07 1.51 6.32 38.19 0.24 1.75 16 15 C -0.06 -1.49 8.80 22.56 0.20 -1.29 16 16 C -0.16 -3.69 10.04 22.45 0.23 -3.47 16 17 C 0.29 6.59 7.39 84.80 0.63 7.22 16 18 O -0.26 -5.65 9.97 -34.28 -0.34 -5.99 16 19 C 0.09 1.65 5.08 22.51 0.11 1.76 16 20 C -0.11 -1.65 9.99 22.37 0.22 -1.42 16 21 C -0.09 -1.21 9.82 22.28 0.22 -0.99 16 22 C -0.04 -0.58 6.32 22.33 0.14 -0.44 16 23 Cl -0.06 -0.83 28.95 -2.72 -0.08 -0.91 16 24 C -0.10 -1.43 9.82 22.28 0.22 -1.21 16 25 C -0.11 -2.02 9.74 22.37 0.22 -1.81 16 26 N -0.52 -11.43 9.20 -308.41 -2.84 -14.27 16 27 C 0.13 2.40 11.11 84.78 0.94 3.34 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.12 3.63 8.14 -2.40 -0.02 3.61 16 30 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 31 H 0.43 5.74 8.83 -92.71 -0.82 4.93 16 32 H 0.14 4.27 6.34 -2.91 -0.02 4.25 16 33 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 35 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 36 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.20 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -73.90 370.69 2.14 -71.76 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.31 Total: 16.83 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.59 Total: -10.46 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -4.17 Total: -84.28 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.38 Total: -28.36 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -73.90 2.14 -71.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057272838.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.545 kcal (2) G-P(sol) polarization free energy of solvation -73.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds