Wall clock time and date at job start Tue Mar 31 2020 06:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47270 * 343.07668 * 3 2 1 5 5 C 1.36799 * 120.00563 * 264.38068 * 4 3 2 6 6 H 1.08007 * 119.99798 * 140.10676 * 5 4 3 7 7 C 1.39043 * 120.00106 * 319.83783 * 5 4 3 8 8 N 1.31374 * 120.00197 * 159.63800 * 7 5 4 9 9 Si 1.86802 * 119.99880 * 339.63872 * 7 5 4 10 10 H 1.48501 * 109.47206 * 88.84191 * 9 7 5 11 11 H 1.48494 * 109.47175 * 208.84896 * 9 7 5 12 12 H 1.48498 * 109.47009 * 328.84522 * 9 7 5 13 13 C 1.34780 * 119.99870 * 84.38235 * 4 3 2 14 14 O 1.21775 * 120.00321 * 175.44188 * 13 4 3 15 15 C 1.46357 * 119.99766 * 355.44990 * 13 4 3 16 16 C 1.37931 * 125.96365 * 173.93640 * 15 13 4 17 17 C 1.39799 * 106.76353 * 179.90056 * 16 15 13 18 18 C 1.36596 * 107.11378 * 0.35707 * 17 16 15 19 19 C 1.47658 * 125.65207 * 179.77372 * 18 17 16 20 20 C 1.39687 * 120.15267 * 0.02663 * 19 18 17 21 21 C 1.37912 * 119.84195 * 179.97438 * 20 19 18 22 22 C 1.38400 * 120.15545 * 359.97438 * 21 20 19 23 23 C 1.38356 * 120.30684 * 0.02562 * 22 21 20 24 24 C 1.50705 * 119.91865 * 180.02562 * 23 22 21 25 25 F 1.39896 * 109.47268 * 0.02562 * 24 23 22 26 26 F 1.39904 * 109.46744 * 119.99994 * 24 23 22 27 27 F 1.39905 * 109.47177 * 239.99801 * 24 23 22 28 28 C 1.37956 * 120.15784 * 359.74331 * 23 22 21 29 29 O 1.34393 * 108.69489 * 359.77547 * 18 17 16 30 30 H 1.09006 * 109.47045 * 223.08530 * 3 2 1 31 31 H 1.08998 * 109.47282 * 103.08220 * 3 2 1 32 32 H 0.96997 * 119.99816 * 179.97438 * 8 7 5 33 33 H 1.07999 * 126.61906 * 0.03351 * 16 15 13 34 34 H 1.08001 * 126.44056 * 180.09839 * 17 16 15 35 35 H 1.07996 * 120.07742 * 359.95006 * 20 19 18 36 36 H 1.07999 * 119.92115 * 180.02562 * 21 20 19 37 37 H 1.07995 * 119.84490 * 180.02562 * 22 21 20 38 38 H 1.08002 * 120.07811 * 180.27614 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3205 0.4020 5 6 3.4345 -1.5572 1.7064 6 1 3.1793 -2.4999 2.1677 7 6 4.1110 -0.5865 2.4367 8 7 4.0891 -0.6181 3.7499 9 14 5.0512 0.7627 1.5505 10 1 4.1443 1.9095 1.2908 11 1 6.1872 1.2112 2.3951 12 1 5.5696 0.2397 0.2609 13 6 3.2143 -2.3028 -0.5133 14 8 3.6983 -3.3747 -0.1975 15 6 2.7603 -2.0812 -1.8869 16 6 2.9266 -2.9500 -2.9451 17 6 2.3430 -2.3428 -4.0609 18 6 1.8538 -1.1350 -3.6514 19 6 1.1579 -0.1533 -4.5071 20 6 0.9508 -0.4253 -5.8615 21 6 0.2997 0.4959 -6.6548 22 6 -0.1487 1.6874 -6.1118 23 6 0.0531 1.9633 -4.7712 24 6 -0.4393 3.2633 -4.1889 25 9 -1.0620 4.0164 -5.1899 26 9 -1.3567 2.9983 -3.1664 27 9 0.6433 3.9814 -3.6696 28 6 0.6987 1.0489 -3.9648 29 8 2.1108 -0.9882 -2.3404 30 1 2.9710 0.7514 0.7020 31 1 2.9713 0.2334 -1.0010 32 1 4.5614 0.0589 4.2592 33 1 3.4119 -3.9144 -2.9167 34 1 2.2925 -2.7500 -5.0599 35 1 1.3002 -1.3547 -6.2865 36 1 0.1385 0.2867 -7.7020 37 1 -0.6583 2.4050 -6.7375 38 1 0.8515 1.2637 -2.9175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058149480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:49 Heat of formation + Delta-G solvation = -107.050553 kcal Electronic energy + Delta-G solvation = -32316.146522 eV Core-core repulsion = 27290.042817 eV Total energy + Delta-G solvation = -5026.103704 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.082 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.26589 -48.77967 -48.74195 -43.73729 -40.74149 -40.23759 -38.07404 -36.64468 -34.65624 -34.21106 -33.50734 -32.76543 -30.17815 -29.55140 -27.39872 -27.08403 -24.79836 -23.67299 -22.76755 -22.01230 -21.26819 -20.48101 -19.70564 -19.58659 -19.42446 -18.85963 -18.40801 -17.68362 -17.36612 -17.21099 -16.97675 -16.20376 -15.90872 -15.76163 -15.65186 -15.44436 -15.37869 -15.17078 -15.07736 -14.91125 -14.89569 -14.71641 -14.56535 -14.23023 -14.10951 -14.05029 -14.01512 -13.85334 -13.65668 -13.57415 -13.21560 -12.86505 -12.61051 -12.31869 -12.23790 -11.88926 -11.35733 -11.22419 -10.92613 -10.77823 -10.30291 -10.14890 -9.07863 -8.61407 -6.32756 -0.63807 -0.11027 0.38923 1.16709 1.29649 1.33870 1.44399 1.46947 1.47511 1.55249 1.66232 2.10280 2.12382 2.48843 2.55857 2.60186 2.70913 2.90243 3.07741 3.30751 3.32875 3.66188 3.70793 3.86713 3.92256 3.99956 4.02602 4.13611 4.24343 4.39775 4.58962 4.65837 4.75910 4.85218 5.02388 5.15844 5.21315 5.34168 5.40565 5.64534 5.79033 5.90350 6.28971 6.36442 6.65155 6.97065 7.45794 8.53786 Molecular weight = 364.08amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003626 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.013510 B = 7720.259613 C = 9357.273871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.220 3.780 3 C 0.176 3.824 4 N -0.453 5.453 5 C -0.346 4.346 6 H 0.058 0.942 7 C 0.027 3.973 8 N -0.889 5.889 9 Si 0.919 3.081 10 H -0.224 1.224 11 H -0.272 1.272 12 H -0.245 1.245 13 C 0.543 3.457 14 O -0.570 6.570 15 C -0.083 4.083 16 C -0.121 4.121 17 C -0.171 4.171 18 C 0.029 3.971 19 C -0.032 4.032 20 C -0.052 4.052 21 C -0.101 4.101 22 C -0.062 4.062 23 C -0.191 4.191 24 C 0.506 3.494 25 F -0.170 7.170 26 F -0.188 7.188 27 F -0.182 7.182 28 C -0.073 4.073 29 O -0.171 6.171 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.288 0.712 33 H 0.171 0.829 34 H 0.205 0.795 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.164 0.836 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.052 8.190 -27.688 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.099 4.099 3 C 0.051 3.949 4 N -0.174 5.174 5 C -0.473 4.473 6 H 0.076 0.924 7 C -0.179 4.179 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.149 1.149 11 H -0.197 1.197 12 H -0.168 1.168 13 C 0.335 3.665 14 O -0.453 6.453 15 C -0.135 4.135 16 C -0.142 4.142 17 C -0.189 4.189 18 C -0.023 4.023 19 C -0.033 4.033 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.080 4.080 23 C -0.193 4.193 24 C 0.452 3.548 25 F -0.152 7.152 26 F -0.169 7.169 27 F -0.164 7.164 28 C -0.091 4.091 29 O -0.068 6.068 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.188 0.812 34 H 0.222 0.778 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.181 0.819 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.523 8.020 -27.064 28.971 hybrid contribution 0.764 0.483 1.361 1.633 sum -5.759 8.503 -25.704 27.679 Atomic orbital electron populations 1.81043 1.13484 1.08257 1.10483 1.29809 0.95636 0.92870 0.91586 1.19934 0.81146 0.88732 1.05129 1.43466 1.56205 1.09802 1.07910 1.18658 1.39417 1.04631 0.84604 0.92395 1.26191 0.95537 1.00527 0.95642 1.69793 1.39069 1.36353 1.07193 0.86289 0.80025 0.79291 0.80462 1.14889 1.19720 1.16842 1.17131 0.81684 0.85615 0.82120 1.90746 1.48945 1.26412 1.79239 1.22479 1.06329 0.89231 0.95491 1.22351 1.00691 1.00605 0.90571 1.22062 1.01961 0.93262 1.01592 1.21140 1.02576 0.97290 0.81245 1.17806 1.00375 0.91586 0.93494 1.21779 0.94477 1.01084 0.89633 1.21567 0.96358 0.91595 1.02287 1.21542 0.95956 0.98697 0.91834 1.19867 1.07811 0.94182 0.97400 1.18444 0.75177 0.85348 0.75844 1.93162 1.83198 1.78375 1.60433 1.93232 1.68108 1.94034 1.61546 1.93218 1.55294 1.80343 1.87508 1.20946 0.95471 0.93163 0.99570 1.84217 1.59390 1.38686 1.24463 0.85681 0.83754 0.90215 0.81158 0.77786 0.80745 0.79687 0.81868 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.48 18.54 20.01 0.37 -19.11 16 2 C 0.22 8.97 14.11 89.44 1.26 10.23 16 3 C 0.18 6.86 4.10 84.57 0.35 7.20 16 4 N -0.45 -21.67 2.10 -650.30 -1.37 -23.04 16 5 C -0.35 -19.41 9.29 84.11 0.78 -18.63 16 6 H 0.06 3.79 8.00 -2.91 -0.02 3.77 16 7 C 0.03 1.42 5.28 84.95 0.45 1.87 16 8 N -0.89 -49.90 13.95 21.68 0.30 -49.59 16 9 Si 0.92 37.01 25.29 68.60 1.73 38.74 16 10 H -0.22 -7.60 6.42 99.48 0.64 -6.96 16 11 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 12 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 13 C 0.54 25.50 7.53 86.35 0.65 26.15 16 14 O -0.57 -30.70 16.80 -4.59 -0.08 -30.78 16 15 C -0.08 -3.05 6.67 24.31 0.16 -2.89 16 16 C -0.12 -3.48 10.66 22.57 0.24 -3.24 16 17 C -0.17 -3.49 10.21 22.26 0.23 -3.26 16 18 C 0.03 0.71 7.02 24.38 0.17 0.88 16 19 C -0.03 -0.63 5.87 -20.10 -0.12 -0.75 16 20 C -0.05 -0.54 9.56 22.54 0.22 -0.33 16 21 C -0.10 -0.72 10.03 22.23 0.22 -0.50 16 22 C -0.06 -0.72 9.43 22.34 0.21 -0.51 16 23 C -0.19 -3.64 5.37 -19.90 -0.11 -3.74 16 24 C 0.51 10.87 3.31 71.24 0.24 11.11 16 25 F -0.17 -3.13 15.96 44.97 0.72 -2.41 16 26 F -0.19 -4.90 17.23 44.97 0.77 -4.12 16 27 F -0.18 -4.30 17.24 44.97 0.78 -3.53 16 28 C -0.07 -1.66 9.26 22.54 0.21 -1.45 16 29 O -0.17 -5.50 6.07 -10.17 -0.06 -5.56 16 30 H 0.13 4.72 3.60 -2.38 -0.01 4.72 16 31 H 0.15 4.66 5.92 -2.39 -0.01 4.65 16 32 H 0.29 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.17 4.51 8.06 -2.91 -0.02 4.49 16 34 H 0.21 2.03 7.23 -2.91 -0.02 2.01 16 35 H 0.18 0.61 6.96 -2.91 -0.02 0.59 16 36 H 0.19 -0.18 8.06 -2.91 -0.02 -0.20 16 37 H 0.16 1.15 7.14 -2.91 -0.02 1.13 16 38 H 0.11 3.06 7.90 -2.91 -0.02 3.03 16 Total: -1.00 -74.52 352.69 9.43 -65.08 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.10 Total: 12.18 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 5.16 Total: 22.14 kcal Atomic # 7 Polarization: -91.05 SS G_CDS: -0.69 Total: -91.75 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.14 Total: -36.34 kcal Atomic # 9 Polarization: -12.33 SS G_CDS: 2.27 Total: -10.06 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.73 Total: 38.74 kcal Total: -74.52 9.43 -65.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058149480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.966 kcal (2) G-P(sol) polarization free energy of solvation -74.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds