Wall clock time and date at job start Tue Mar 31 2020 05:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86803 * 119.99498 * 2 1 4 4 H 1.48500 * 109.47253 * 269.99552 * 3 2 1 5 5 H 1.48498 * 109.47275 * 29.99938 * 3 2 1 6 6 H 1.48507 * 109.46660 * 149.99958 * 3 2 1 7 7 C 1.39881 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00018 * 175.57596 * 7 2 1 9 9 C 1.41215 * 120.00534 * 355.56881 * 7 2 1 10 10 C 1.40830 * 120.18355 * 214.77522 * 9 7 2 11 11 C 1.36434 * 119.81034 * 180.02562 * 10 9 7 12 12 C 1.39314 * 120.18664 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.82004 * 179.97438 * 12 11 10 14 14 C 1.42899 * 117.00399 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.47338 * 180.02562 * 14 13 12 16 16 O 1.21293 * 119.99969 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99856 * 179.97438 * 15 14 13 18 18 C 1.40026 * 119.99820 * 175.68223 * 17 15 14 19 19 C 1.38885 * 120.00066 * 214.89669 * 18 17 15 20 20 C 1.38039 * 119.98663 * 179.74056 * 19 18 17 21 21 C 1.38831 * 120.00999 * 0.50929 * 20 19 18 22 22 N 1.40330 * 119.99511 * 179.74400 * 21 20 19 23 23 C 1.37072 * 126.47153 * 359.73663 * 22 21 20 24 24 C 1.34679 * 106.83638 * 179.83915 * 23 22 21 25 25 N 1.34116 * 108.18801 * 0.42090 * 24 23 22 26 26 C 1.30536 * 109.34377 * 359.73070 * 25 24 23 27 27 C 1.38831 * 120.00821 * 359.76242 * 21 20 19 28 28 C 1.38040 * 120.00882 * 359.97438 * 27 21 20 29 29 C 1.39310 * 120.36394 * 0.25122 * 12 11 10 30 30 C 1.36438 * 120.18455 * 359.48801 * 29 12 11 31 31 H 0.97001 * 120.00539 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.09649 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.90692 * 179.97438 * 11 10 9 34 34 H 1.09003 * 109.46824 * 299.99757 * 14 13 12 35 35 H 1.09000 * 109.46861 * 59.99444 * 14 13 12 36 36 H 0.96996 * 120.00225 * 355.68210 * 17 15 14 37 37 H 1.07994 * 120.00623 * 359.97438 * 19 18 17 38 38 H 1.08004 * 119.99447 * 180.26958 * 20 19 18 39 39 H 1.07998 * 126.57841 * 359.97438 * 23 22 21 40 40 H 1.08004 * 125.90257 * 180.12513 * 24 23 22 41 41 H 1.08001 * 125.71750 * 180.02562 * 26 25 24 42 42 H 1.08009 * 119.99615 * 180.02562 * 27 21 20 43 43 H 1.07996 * 120.00063 * 179.97438 * 28 27 21 44 44 H 1.08008 * 119.90818 * 179.72502 * 29 12 11 45 45 H 1.07996 * 120.09524 * 180.25413 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4403 0.7001 7 6 2.0082 -1.2114 -0.0005 8 1 3.0858 -1.2128 -0.0727 9 6 1.3054 -2.4326 0.0934 10 6 1.8642 -3.5191 0.7939 11 6 1.1788 -4.6957 0.8794 12 6 -0.0706 -4.8239 0.2767 13 8 -0.7455 -5.9975 0.3660 14 6 -2.0217 -6.0624 -0.2737 15 6 -2.6172 -7.4315 -0.0690 16 8 -2.0085 -8.2695 0.5622 17 7 -3.8262 -7.7248 -0.5873 18 6 -4.3398 -9.0226 -0.4753 19 6 -5.1104 -9.5554 -1.5006 20 6 -5.6121 -10.8369 -1.3921 21 6 -5.3554 -11.5891 -0.2539 22 7 -5.8701 -12.8897 -0.1417 23 6 -6.6419 -13.5432 -1.0669 24 6 -6.9099 -14.7620 -0.5604 25 7 -6.3282 -14.8517 0.6447 26 6 -5.7023 -13.7366 0.9068 27 6 -4.5898 -11.0545 0.7735 28 6 -4.0833 -9.7752 0.6634 29 6 -0.6284 -3.7555 -0.4220 30 6 0.0416 -2.5704 -0.5125 31 1 -0.4851 0.8400 -0.0004 32 1 2.8329 -3.4215 1.2613 33 1 1.6060 -5.5300 1.4159 34 1 -2.6829 -5.3108 0.1576 35 1 -1.9033 -5.8730 -1.3406 36 1 -4.3406 -7.0369 -1.0380 37 1 -5.3139 -8.9687 -2.3841 38 1 -6.2078 -11.2529 -2.1913 39 1 -6.9700 -13.1560 -2.0202 40 1 -7.4964 -15.5321 -1.0396 41 1 -5.1442 -13.5233 1.8064 42 1 -4.3898 -11.6401 1.6588 43 1 -3.4881 -9.3593 1.4628 44 1 -1.5956 -3.8645 -0.8903 45 1 -0.3940 -1.7419 -1.0511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058158679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:54 Heat of formation + Delta-G solvation = 54.478437 kcal Electronic energy + Delta-G solvation = -29251.241620 eV Core-core repulsion = 25007.550836 eV Total energy + Delta-G solvation = -4243.690785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.67483 -40.87008 -39.26775 -38.46596 -36.44275 -35.54908 -33.56314 -33.34275 -31.79304 -30.21554 -29.81545 -29.66720 -29.02086 -27.52581 -24.84187 -23.96257 -23.74913 -21.86381 -21.23678 -21.16919 -20.76861 -20.21554 -19.03980 -18.14920 -17.69866 -17.33537 -16.58366 -16.27358 -15.84248 -15.55803 -15.41584 -15.33449 -14.82749 -14.62583 -14.25981 -14.12702 -14.04560 -13.94881 -13.79821 -13.56745 -13.27965 -13.06348 -12.86442 -12.50598 -11.96900 -11.91886 -11.79588 -11.48693 -11.36961 -11.28094 -11.10824 -10.70738 -10.47838 -10.22182 -10.05278 -9.99190 -9.84649 -9.53850 -9.42293 -9.16640 -9.03944 -8.28137 -7.77026 -6.98941 -6.67072 -4.38580 0.36090 0.80390 1.80305 2.24114 2.30561 2.45783 2.67578 2.74720 2.87673 3.06349 3.08038 3.15821 3.29148 3.94094 3.99732 4.13362 4.23285 4.29185 4.43318 4.50433 4.61672 4.69856 4.74785 4.96987 5.01518 5.16594 5.17701 5.23313 5.40852 5.43482 5.53031 5.53876 5.79980 5.90795 5.94759 6.01661 6.17479 6.30496 6.39055 6.53214 6.77608 6.84396 6.93418 6.99876 7.23032 7.30246 7.48229 7.60331 7.76312 7.82180 7.93480 8.08569 8.30709 8.56693 8.86884 8.90159 10.25777 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.039259 B = 0.001338 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.039845 B =20918.365686 C =21410.845978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.082 3.918 10 C -0.182 4.182 11 C -0.115 4.115 12 C -0.003 4.003 13 O -0.304 6.304 14 C 0.053 3.947 15 C 0.518 3.482 16 O -0.495 6.495 17 N -0.676 5.676 18 C 0.151 3.849 19 C -0.119 4.119 20 C -0.111 4.111 21 C 0.110 3.890 22 N -0.406 5.406 23 C -0.056 4.056 24 C -0.025 4.025 25 N -0.488 5.488 26 C 0.188 3.812 27 C -0.110 4.110 28 C -0.094 4.094 29 C -0.183 4.183 30 C -0.120 4.120 31 H 0.277 0.723 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.415 0.585 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.209 0.791 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.095 0.905 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.619 -16.904 -4.555 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.080 3.920 10 C -0.202 4.202 11 C -0.134 4.134 12 C -0.046 4.046 13 O -0.219 6.219 14 C -0.026 4.026 15 C 0.305 3.695 16 O -0.367 6.367 17 N -0.323 5.323 18 C 0.056 3.944 19 C -0.140 4.140 20 C -0.131 4.131 21 C 0.017 3.983 22 N -0.084 5.084 23 C -0.186 4.186 24 C -0.171 4.171 25 N -0.205 5.205 26 C -0.093 4.093 27 C -0.130 4.130 28 C -0.115 4.115 29 C -0.202 4.202 30 C -0.140 4.140 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.252 0.748 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.194 0.806 40 H 0.191 0.809 41 H 0.225 0.775 42 H 0.154 0.846 43 H 0.170 0.830 44 H 0.113 0.887 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.224 -18.061 -3.486 23.877 hybrid contribution -0.136 2.048 -0.929 2.253 sum -15.360 -16.013 -4.415 22.624 Atomic orbital electron populations 1.69739 1.07258 1.28630 1.39070 1.25830 0.94931 1.01083 0.92568 0.86207 0.80242 0.80551 0.79035 1.19580 1.20339 1.18745 1.19434 0.94681 0.90094 1.45308 0.90655 1.17673 0.92512 0.92232 0.89632 1.20767 1.00854 0.94154 1.04402 1.19640 0.93023 0.98014 1.02740 1.18666 0.94411 0.84560 1.06967 1.85908 1.28544 1.34357 1.73078 1.22051 0.87975 0.93000 0.99621 1.20707 0.80088 0.90169 0.78493 1.90727 1.60001 1.48927 1.37019 1.43436 1.19321 1.10289 1.59283 1.17797 0.96782 0.85857 0.94006 1.20780 1.00213 0.95146 0.97879 1.20594 1.01811 0.93985 0.96708 1.17821 0.99828 0.83541 0.97112 1.43225 1.37791 1.11169 1.16236 1.22769 1.02584 0.95449 0.97812 1.22371 1.04606 0.96748 0.93384 1.70346 1.12340 1.21894 1.15923 1.25300 1.03608 0.86117 0.94274 1.20748 0.97948 0.96131 0.98220 1.21249 0.99184 0.93663 0.97365 1.20661 1.00000 0.94963 1.04541 1.21235 0.96829 0.95400 1.00515 0.91220 0.87899 0.88189 0.89427 0.89450 0.74831 0.84373 0.84758 0.80556 0.80902 0.77477 0.84630 0.83000 0.88679 0.84930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.55 10.60 55.54 0.59 -19.96 16 2 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 3 Si 0.91 18.46 29.56 -169.99 -5.03 13.43 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.97 9.03 -37.84 -0.34 -12.31 16 8 H 0.08 1.87 7.85 -52.49 -0.41 1.46 16 9 C 0.08 2.10 5.55 -106.80 -0.59 1.50 16 10 C -0.18 -4.33 9.74 -39.25 -0.38 -4.71 16 11 C -0.12 -2.60 9.92 -39.83 -0.40 -3.00 16 12 C 0.00 -0.07 6.71 -38.78 -0.26 -0.33 16 13 O -0.30 -5.95 9.65 -38.64 -0.37 -6.33 16 14 C 0.05 0.73 5.21 36.01 0.19 0.92 16 15 C 0.52 6.68 7.75 -10.99 -0.09 6.60 16 16 O -0.49 -8.30 13.95 -14.36 -0.20 -8.50 16 17 N -0.68 -5.89 5.34 -9.83 -0.05 -5.94 16 18 C 0.15 1.37 6.30 -83.64 -0.53 0.84 16 19 C -0.12 -0.82 9.96 -39.41 -0.39 -1.21 16 20 C -0.11 -0.77 9.47 -39.43 -0.37 -1.14 16 21 C 0.11 0.92 6.64 -83.53 -0.55 0.36 16 22 N -0.41 -3.50 2.99 -62.07 -0.19 -3.69 16 23 C -0.06 -0.42 10.85 -16.47 -0.18 -0.60 16 24 C -0.02 -0.22 11.86 -17.81 -0.21 -0.43 16 25 N -0.49 -5.30 11.25 -14.47 -0.16 -5.47 16 26 C 0.19 1.71 11.91 -89.64 -1.07 0.64 16 27 C -0.11 -0.94 9.46 -39.43 -0.37 -1.32 16 28 C -0.09 -0.95 8.69 -39.42 -0.34 -1.29 16 29 C -0.18 -3.94 8.96 -39.83 -0.36 -4.29 16 30 C -0.12 -2.95 8.62 -39.25 -0.34 -3.29 16 31 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 32 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 33 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 35 H 0.09 1.04 7.63 -51.93 -0.40 0.64 16 36 H 0.42 2.12 8.82 -40.82 -0.36 1.76 16 37 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.63 6.81 -52.48 -0.36 0.27 16 39 H 0.18 0.77 7.15 -52.49 -0.38 0.40 16 40 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.21 1.24 7.06 -52.49 -0.37 0.87 16 42 H 0.14 0.89 6.77 -52.48 -0.36 0.54 16 43 H 0.15 1.78 6.24 -52.49 -0.33 1.45 16 44 H 0.10 1.70 6.27 -52.48 -0.33 1.37 16 45 H 0.13 3.36 6.13 -52.49 -0.32 3.04 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -33.14 385.61 -11.11 -44.25 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.83 Total: 7.82 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -6.68 Total: -21.43 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.19 Total: -35.05 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.57 Total: -14.83 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.14 -11.11 -44.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058158679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.727 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds