Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99607 * 2 1 4 4 H 1.48508 * 109.46827 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47235 * 29.99622 * 3 2 1 6 6 H 1.48499 * 109.47208 * 149.99844 * 3 2 1 7 7 C 1.37871 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99861 * 273.81540 * 10 9 7 12 12 C 1.50706 * 109.46701 * 264.89198 * 11 10 9 13 13 C 1.34507 * 125.79054 * 90.00286 * 12 11 10 14 14 C 1.41386 * 106.83917 * 179.97438 * 13 12 11 15 15 C 1.34511 * 106.84178 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.78498 * 269.69043 * 12 11 10 17 17 C 1.34770 * 119.99822 * 93.81058 * 10 9 7 18 18 O 1.21595 * 119.99753 * 183.43897 * 17 10 9 19 19 C 1.47608 * 120.00519 * 3.43939 * 17 10 9 20 20 C 1.39737 * 120.07574 * 309.32382 * 19 17 10 21 21 C 1.38117 * 119.92667 * 179.72251 * 20 19 17 22 22 C 1.39539 * 119.99294 * 0.24818 * 21 20 19 23 23 C 1.38913 * 120.04755 * 0.02562 * 22 21 20 24 24 Cl 1.73605 * 119.89894 * 179.97438 * 23 22 21 25 25 C 1.37902 * 120.19975 * 0.02562 * 23 22 21 26 26 O 1.36383 * 108.59544 * 180.02562 * 22 21 20 27 27 C 1.43965 * 105.52562 * 342.66093 * 26 22 21 28 28 O 1.36554 * 131.41826 * 180.24926 * 21 20 19 29 29 H 0.96990 * 120.00239 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46761 * 60.00560 * 9 7 2 31 31 H 1.08996 * 109.47347 * 300.00064 * 9 7 2 32 32 H 1.08997 * 109.47415 * 24.88719 * 11 10 9 33 33 H 1.08991 * 109.46959 * 144.89289 * 11 10 9 34 34 H 1.08001 * 126.58052 * 0.02957 * 13 12 11 35 35 H 1.07998 * 126.57813 * 179.97438 * 14 13 12 36 36 H 1.08001 * 125.79026 * 180.02562 * 15 14 13 37 37 H 1.08005 * 120.03878 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.00418 * 179.97438 * 25 23 22 39 39 H 1.08999 * 110.56766 * 268.64788 * 27 26 22 40 40 H 1.09011 * 110.68977 * 145.85722 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 6 2.7435 -4.1156 -1.2628 12 6 1.9234 -5.2918 -1.7268 13 6 0.8375 -5.2304 -2.5183 14 6 0.3870 -6.5582 -2.6993 15 6 1.2242 -7.3516 -2.0072 16 8 2.1563 -6.5795 -1.4250 17 6 2.5822 -4.1741 1.1678 18 8 3.4192 -5.0561 1.1737 19 6 1.9813 -3.7185 2.4367 20 6 1.9423 -2.3558 2.7436 21 6 1.3741 -1.9324 3.9291 22 6 0.8445 -2.8656 4.8211 23 6 0.8887 -4.2206 4.5180 24 17 0.2292 -5.3783 5.6309 25 6 1.4558 -4.6488 3.3362 26 8 0.3481 -2.2000 5.9031 27 6 0.9435 -0.8901 5.8561 28 8 1.2081 -0.6836 4.4560 29 1 -0.4850 0.8399 -0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6249 -2.5563 0.8919 32 1 2.7043 -3.3266 -2.0138 33 1 3.7775 -4.4283 -1.1178 34 1 0.3952 -4.3380 -2.9361 35 1 -0.4661 -6.8747 -3.2810 36 1 1.1608 -8.4274 -1.9362 37 1 2.3524 -1.6341 2.0526 38 1 1.4888 -5.7030 3.1039 39 1 1.8711 -0.8703 6.4280 40 1 0.2487 -0.1376 6.2294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058185926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = -46.964088 kcal Electronic energy + Delta-G solvation = -30529.440093 eV Core-core repulsion = 26110.791735 eV Total energy + Delta-G solvation = -4418.648358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22001 -42.03234 -39.58488 -37.38769 -36.35637 -35.91544 -35.38186 -32.97123 -32.56923 -31.07589 -30.07249 -29.62735 -27.47492 -26.12086 -25.48688 -23.54000 -22.82782 -22.71751 -21.38249 -20.50811 -19.45183 -17.93324 -17.56249 -17.31380 -17.16300 -16.65424 -16.37044 -16.02697 -15.65404 -15.10710 -14.78170 -14.56174 -14.43655 -14.35532 -13.91362 -13.57062 -13.35911 -13.13376 -12.82694 -12.59532 -12.51882 -12.50697 -12.40994 -12.24556 -11.83419 -11.66296 -11.39804 -11.14012 -11.02204 -10.92364 -10.89775 -10.54645 -10.24156 -9.94397 -9.62237 -9.45715 -8.71297 -8.39539 -8.24672 -8.04599 -7.93899 -6.31893 -4.41230 0.97899 1.30405 1.96931 2.12374 2.79917 2.86244 3.00865 3.16116 3.24921 3.26355 3.36308 3.52034 3.71871 3.93908 4.23035 4.67585 4.73669 4.87328 4.98588 5.00695 5.07755 5.21800 5.30482 5.32201 5.35900 5.50259 5.67259 5.88682 5.97703 6.03021 6.07752 6.23073 6.28604 6.38372 6.40989 6.51932 6.71353 6.79214 7.07253 7.20644 7.30026 7.48048 7.60702 7.87743 8.05948 8.58612 8.74421 9.26360 10.73926 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.007128 B = 0.005009 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3926.955452 B = 5589.059959 C = 8688.270714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.074 3.926 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.067 0.933 9 C 0.231 3.769 10 N -0.583 5.583 11 C 0.198 3.802 12 C -0.018 4.018 13 C -0.200 4.200 14 C -0.217 4.217 15 C -0.050 4.050 16 O -0.165 6.165 17 C 0.567 3.433 18 O -0.548 6.548 19 C -0.098 4.098 20 C -0.043 4.043 21 C 0.041 3.959 22 C 0.052 3.948 23 C -0.034 4.034 24 Cl -0.061 7.061 25 C -0.059 4.059 26 O -0.300 6.300 27 C 0.210 3.790 28 O -0.294 6.294 29 H 0.268 0.732 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.143 0.857 36 H 0.196 0.804 37 H 0.187 0.813 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -6.476 4.471 7.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.085 0.915 9 C 0.111 3.889 10 N -0.313 5.313 11 C 0.075 3.925 12 C -0.070 4.070 13 C -0.220 4.220 14 C -0.236 4.236 15 C -0.119 4.119 16 O -0.060 6.060 17 C 0.354 3.646 18 O -0.428 6.428 19 C -0.101 4.101 20 C -0.062 4.062 21 C -0.004 4.004 22 C 0.006 3.994 23 C -0.061 4.061 24 Cl -0.032 7.032 25 C -0.078 4.078 26 O -0.216 6.216 27 C 0.098 3.902 28 O -0.210 6.210 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.135 0.865 33 H 0.109 0.891 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.213 0.787 37 H 0.204 0.796 38 H 0.166 0.834 39 H 0.100 0.900 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.785 -6.815 4.831 8.390 hybrid contribution -0.283 1.102 0.128 1.145 sum 0.502 -5.712 4.959 7.581 Atomic orbital electron populations 1.69913 1.06064 1.27690 1.47565 1.24933 0.94820 0.99269 0.94148 0.86560 0.80037 0.82988 0.78421 1.20345 1.20895 1.19472 1.21419 0.93775 0.90253 1.53608 0.91477 1.19687 0.87573 0.82112 0.99501 1.48221 1.45275 1.34199 1.03583 1.19724 0.95954 0.89777 0.87072 1.23173 0.99785 0.83523 1.00494 1.21672 0.98129 0.98304 1.03933 1.21791 1.02972 0.93338 1.05539 1.23972 0.91295 0.97003 0.99619 1.84112 1.46009 1.17059 1.58871 1.17926 0.81709 0.81426 0.83489 1.90756 1.33007 1.31791 1.87247 1.19435 1.02612 0.92336 0.95755 1.21396 0.94865 0.96063 0.93835 1.19456 1.02261 0.82389 0.96287 1.19579 0.98619 0.92137 0.89074 1.19396 1.06521 0.85583 0.94593 1.98351 1.84671 1.58513 1.61670 1.20711 0.96379 1.00569 0.90178 1.87342 1.64804 1.25615 1.43864 1.25646 0.98422 0.83661 0.82453 1.87493 1.87584 1.24001 1.21917 0.92207 0.94194 0.93677 0.86463 0.89126 0.83352 0.83877 0.78680 0.79644 0.83384 0.89952 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.70 13.29 55.43 0.74 -21.97 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 19.30 29.54 -169.99 -5.02 14.28 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.55 -12.91 6.62 -34.44 -0.23 -13.14 16 8 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.23 5.08 4.65 -5.19 -0.02 5.05 16 10 N -0.58 -11.57 2.45 -177.63 -0.44 -12.01 16 11 C 0.20 3.46 5.94 -5.19 -0.03 3.43 16 12 C -0.02 -0.31 6.86 -35.62 -0.24 -0.55 16 13 C -0.20 -3.19 10.81 -39.70 -0.43 -3.62 16 14 C -0.22 -3.03 10.91 -39.70 -0.43 -3.47 16 15 C -0.05 -0.70 12.09 29.41 0.36 -0.34 16 16 O -0.17 -2.86 10.65 5.71 0.06 -2.79 16 17 C 0.57 11.54 7.16 -12.44 -0.09 11.45 16 18 O -0.55 -11.99 16.68 5.28 0.09 -11.90 16 19 C -0.10 -1.87 4.81 -104.98 -0.51 -2.38 16 20 C -0.04 -0.85 7.65 -39.07 -0.30 -1.15 16 21 C 0.04 0.76 7.14 -39.14 -0.28 0.48 16 22 C 0.05 0.89 6.94 -38.85 -0.27 0.62 16 23 C -0.03 -0.56 6.32 -39.45 -0.25 -0.81 16 24 Cl -0.06 -0.88 28.95 -51.86 -1.50 -2.38 16 25 C -0.06 -1.01 9.50 -39.17 -0.37 -1.38 16 26 O -0.30 -4.66 11.39 -45.30 -0.52 -5.18 16 27 C 0.21 2.67 8.88 101.05 0.90 3.57 16 28 O -0.29 -5.16 11.41 -45.86 -0.52 -5.68 16 29 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 30 H 0.04 0.93 8.10 -51.93 -0.42 0.50 16 31 H 0.05 1.07 5.75 -51.93 -0.30 0.77 16 32 H 0.12 1.87 8.03 -51.93 -0.42 1.46 16 33 H 0.09 1.55 7.53 -51.93 -0.39 1.16 16 34 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.19 3.99 4.85 -52.48 -0.25 3.73 16 38 H 0.15 2.34 8.06 -52.49 -0.42 1.92 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.13 1.22 8.14 -51.92 -0.42 0.80 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -28.91 366.32 -7.75 -36.66 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -3.86 Total: 5.97 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.30 Total: -0.53 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.30 Total: -33.97 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.89 Total: -25.55 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.91 -7.75 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058185926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.301 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds