Wall clock time and date at job start Tue Mar 31 2020 05:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86804 * 119.99607 * 2 1 4 4 H 1.48508 * 109.46827 * 269.99878 * 3 2 1 5 5 H 1.48499 * 109.47235 * 29.99622 * 3 2 1 6 6 H 1.48499 * 109.47208 * 149.99844 * 3 2 1 7 7 C 1.37871 * 120.00213 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99929 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47361 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99861 * 273.81540 * 10 9 7 12 12 C 1.50706 * 109.46701 * 264.89198 * 11 10 9 13 13 C 1.34507 * 125.79054 * 90.00286 * 12 11 10 14 14 C 1.41386 * 106.83917 * 179.97438 * 13 12 11 15 15 C 1.34511 * 106.84178 * 0.02562 * 14 13 12 16 16 O 1.34301 * 125.78498 * 269.69043 * 12 11 10 17 17 C 1.34770 * 119.99822 * 93.81058 * 10 9 7 18 18 O 1.21595 * 119.99753 * 183.43897 * 17 10 9 19 19 C 1.47608 * 120.00519 * 3.43939 * 17 10 9 20 20 C 1.39737 * 120.07574 * 309.32382 * 19 17 10 21 21 C 1.38117 * 119.92667 * 179.72251 * 20 19 17 22 22 C 1.39539 * 119.99294 * 0.24818 * 21 20 19 23 23 C 1.38913 * 120.04755 * 0.02562 * 22 21 20 24 24 Cl 1.73605 * 119.89894 * 179.97438 * 23 22 21 25 25 C 1.37902 * 120.19975 * 0.02562 * 23 22 21 26 26 O 1.36383 * 108.59544 * 180.02562 * 22 21 20 27 27 C 1.43965 * 105.52562 * 342.66093 * 26 22 21 28 28 O 1.36554 * 131.41826 * 180.24926 * 21 20 19 29 29 H 0.96990 * 120.00239 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46761 * 60.00560 * 9 7 2 31 31 H 1.08996 * 109.47347 * 300.00064 * 9 7 2 32 32 H 1.08997 * 109.47415 * 24.88719 * 11 10 9 33 33 H 1.08991 * 109.46959 * 144.89289 * 11 10 9 34 34 H 1.08001 * 126.58052 * 0.02957 * 13 12 11 35 35 H 1.07998 * 126.57813 * 179.97438 * 14 13 12 36 36 H 1.08001 * 125.79026 * 180.02562 * 15 14 13 37 37 H 1.08005 * 120.03878 * 359.97438 * 20 19 17 38 38 H 1.08000 * 120.00418 * 179.97438 * 25 23 22 39 39 H 1.08999 * 110.56766 * 268.64788 * 27 26 22 40 40 H 1.09011 * 110.68977 * 145.85722 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0027 11 6 2.7435 -4.1156 -1.2628 12 6 1.9234 -5.2918 -1.7268 13 6 0.8375 -5.2304 -2.5183 14 6 0.3870 -6.5582 -2.6993 15 6 1.2242 -7.3516 -2.0072 16 8 2.1563 -6.5795 -1.4250 17 6 2.5822 -4.1741 1.1678 18 8 3.4192 -5.0561 1.1737 19 6 1.9813 -3.7185 2.4367 20 6 1.9423 -2.3558 2.7436 21 6 1.3741 -1.9324 3.9291 22 6 0.8445 -2.8656 4.8211 23 6 0.8887 -4.2206 4.5180 24 17 0.2292 -5.3783 5.6309 25 6 1.4558 -4.6488 3.3362 26 8 0.3481 -2.2000 5.9031 27 6 0.9435 -0.8901 5.8561 28 8 1.2081 -0.6836 4.4560 29 1 -0.4850 0.8399 -0.0004 30 1 0.6243 -2.5575 -0.8881 31 1 0.6249 -2.5563 0.8919 32 1 2.7043 -3.3266 -2.0138 33 1 3.7775 -4.4283 -1.1178 34 1 0.3952 -4.3380 -2.9361 35 1 -0.4661 -6.8747 -3.2810 36 1 1.1608 -8.4274 -1.9362 37 1 2.3524 -1.6341 2.0526 38 1 1.4888 -5.7030 3.1039 39 1 1.8711 -0.8703 6.4280 40 1 0.2487 -0.1376 6.2294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058185926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:35 Heat of formation + Delta-G solvation = -62.483044 kcal Electronic energy + Delta-G solvation = -30530.113046 eV Core-core repulsion = 26110.791735 eV Total energy + Delta-G solvation = -4419.321310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 363.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.43426 -43.30133 -41.12710 -38.75074 -37.65402 -37.18664 -37.02798 -34.72540 -33.83973 -32.47252 -31.43690 -30.97683 -29.21403 -27.37275 -26.70730 -25.19079 -24.35790 -24.11082 -22.57922 -21.78962 -20.84437 -19.30082 -18.89017 -18.76174 -18.59631 -18.08505 -17.83592 -17.41651 -17.05029 -16.53722 -16.21861 -16.17178 -15.84635 -15.63467 -15.22422 -14.96435 -14.78164 -14.44308 -14.26343 -14.12652 -13.92929 -13.84196 -13.67327 -13.54264 -13.40992 -13.02615 -12.84953 -12.67694 -12.57645 -12.51288 -12.15885 -12.13274 -11.79670 -11.71780 -11.09081 -10.79246 -10.59171 -9.79277 -9.74263 -9.39124 -9.29317 -8.20593 -6.33677 -0.42917 -0.08959 0.72545 0.84231 1.43043 1.45328 1.49629 1.54602 1.57084 1.69734 2.11493 2.30617 2.32635 2.38755 2.53676 3.10032 3.34003 3.47545 3.74607 3.79861 3.86186 4.00043 4.12176 4.12938 4.19234 4.21781 4.39368 4.54604 4.59968 4.65608 4.79326 4.91251 4.95809 5.01031 5.06336 5.19996 5.22287 5.23088 5.58078 5.66289 5.73381 5.88414 6.02216 6.26199 6.41526 6.76369 7.08637 7.36809 8.85026 Molecular weight = 363.08amu Principal moments of inertia in cm(-1) A = 0.007128 B = 0.005009 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3926.955452 B = 5589.059959 C = 8688.270714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.583 5.583 11 C 0.197 3.803 12 C -0.046 4.046 13 C -0.204 4.204 14 C -0.225 4.225 15 C -0.042 4.042 16 O -0.188 6.188 17 C 0.566 3.434 18 O -0.568 6.568 19 C -0.113 4.113 20 C -0.057 4.057 21 C 0.031 3.969 22 C 0.059 3.941 23 C -0.034 4.034 24 Cl -0.037 7.037 25 C -0.053 4.053 26 O -0.303 6.303 27 C 0.201 3.799 28 O -0.317 6.317 29 H 0.267 0.733 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.172 0.828 36 H 0.238 0.762 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.114 0.886 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.124 -7.196 5.345 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.167 4.167 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.583 4.583 8 H 0.083 0.917 9 C 0.130 3.870 10 N -0.312 5.312 11 C 0.074 3.926 12 C -0.097 4.097 13 C -0.224 4.224 14 C -0.244 4.244 15 C -0.110 4.110 16 O -0.085 6.085 17 C 0.354 3.646 18 O -0.449 6.449 19 C -0.116 4.116 20 C -0.076 4.076 21 C -0.014 4.014 22 C 0.012 3.988 23 C -0.061 4.061 24 Cl -0.008 7.008 25 C -0.072 4.072 26 O -0.219 6.219 27 C 0.091 3.909 28 O -0.234 6.234 29 H 0.076 0.924 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.143 0.857 33 H 0.108 0.892 34 H 0.167 0.833 35 H 0.189 0.811 36 H 0.254 0.746 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.131 0.869 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.422 -7.532 5.701 9.455 hybrid contribution -0.212 1.257 -0.061 1.277 sum 0.210 -6.274 5.640 8.439 Atomic orbital electron populations 1.70005 1.07248 1.28151 1.49212 1.25519 0.95317 1.01826 0.94061 0.85744 0.78966 0.79797 0.78448 1.19821 1.21193 1.19141 1.21539 0.93610 0.90830 1.52368 0.91749 1.19288 0.87435 0.82457 0.97868 1.48197 1.44778 1.33660 1.04564 1.19791 0.95967 0.90569 0.86242 1.22999 1.00817 0.83655 1.02200 1.21897 0.97640 0.99584 1.03252 1.22140 1.03976 0.92225 1.06016 1.24864 0.89727 0.98558 0.97829 1.84091 1.47373 1.17244 1.59746 1.18121 0.81420 0.81083 0.83948 1.90728 1.33874 1.32701 1.87578 1.19380 1.03815 0.92594 0.95824 1.21111 0.96218 0.95887 0.94390 1.19474 1.02345 0.83323 0.96282 1.19626 0.97795 0.92184 0.89160 1.19433 1.05954 0.86030 0.94689 1.98358 1.84230 1.57539 1.60697 1.20808 0.95693 1.00774 0.89941 1.87330 1.64931 1.26641 1.43008 1.26294 1.00925 0.83196 0.80532 1.87455 1.87678 1.23822 1.24431 0.92363 0.95600 0.95344 0.85658 0.89246 0.83252 0.81067 0.74559 0.81887 0.82151 0.86857 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.98 13.29 21.45 0.28 -47.69 16 2 C 0.04 1.74 5.46 84.65 0.46 2.20 16 3 Si 0.94 39.87 29.54 68.60 2.03 41.89 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.55 -26.10 6.62 25.60 0.17 -25.93 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.25 11.38 4.65 85.63 0.40 11.78 16 10 N -0.58 -23.86 2.45 -834.17 -2.05 -25.90 16 11 C 0.20 7.07 5.94 85.63 0.51 7.58 16 12 C -0.05 -1.58 6.86 24.83 0.17 -1.41 16 13 C -0.20 -6.43 10.81 22.19 0.24 -6.19 16 14 C -0.22 -5.85 10.91 22.19 0.24 -5.61 16 15 C -0.04 -1.08 12.09 66.97 0.81 -0.27 16 16 O -0.19 -6.40 10.65 -2.50 -0.03 -6.43 16 17 C 0.57 23.62 7.16 86.72 0.62 24.24 16 18 O -0.57 -25.26 16.68 -4.02 -0.07 -25.33 16 19 C -0.11 -4.40 4.81 -20.10 -0.10 -4.49 16 20 C -0.06 -2.32 7.65 22.60 0.17 -2.15 16 21 C 0.03 1.14 7.14 22.55 0.16 1.30 16 22 C 0.06 1.96 6.94 22.75 0.16 2.12 16 23 C -0.03 -1.08 6.32 22.35 0.14 -0.93 16 24 Cl -0.04 -1.01 28.95 -2.72 -0.08 -1.08 16 25 C -0.05 -1.79 9.50 22.54 0.21 -1.58 16 26 O -0.30 -8.80 11.39 -74.68 -0.85 -9.66 16 27 C 0.20 4.64 8.88 113.37 1.01 5.64 16 28 O -0.32 -10.93 11.41 -76.69 -0.87 -11.80 16 29 H 0.27 13.56 8.31 -92.72 -0.77 12.79 16 30 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.03 1.41 5.75 -2.39 -0.01 1.39 16 32 H 0.13 4.15 8.03 -2.39 -0.02 4.13 16 33 H 0.09 3.18 7.53 -2.39 -0.02 3.16 16 34 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.17 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.24 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.16 7.32 4.85 -2.91 -0.01 7.30 16 38 H 0.16 4.96 8.06 -2.91 -0.02 4.94 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.17 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -62.84 366.32 4.86 -57.98 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 1.11 Total: 21.73 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 5.38 Total: 6.30 kcal Atomic # 7 Polarization: -71.83 SS G_CDS: -1.76 Total: -73.59 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.82 Total: -53.22 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.08 kcal Total: -62.84 4.86 -57.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058185926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.503 kcal (2) G-P(sol) polarization free energy of solvation -62.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds