Wall clock time and date at job start Tue Mar 31 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 H 1.07999 * 119.99904 * 359.97438 * 4 3 2 6 6 C 1.37883 * 120.00385 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00419 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99411 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47279 * 90.00270 * 8 6 4 10 10 H 1.48505 * 109.46775 * 209.99777 * 8 6 4 11 11 H 1.48495 * 109.47628 * 329.99523 * 8 6 4 12 12 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 13 13 O 1.21279 * 119.99925 * 179.72608 * 12 2 1 14 14 C 1.50700 * 119.99961 * 359.72839 * 12 2 1 15 15 N 1.46497 * 109.47128 * 180.02562 * 14 12 2 16 16 C 1.33794 * 124.17609 * 269.69843 * 15 14 12 17 17 O 1.21541 * 123.76809 * 0.03492 * 16 15 14 18 18 N 1.34523 * 112.45746 * 179.86549 * 16 15 14 19 19 C 1.47307 * 106.62080 * 0.38319 * 18 16 15 20 20 C 1.52999 * 110.60079 * 118.30541 * 19 18 16 21 21 C 1.50697 * 110.73008 * 241.19224 * 19 18 16 22 22 C 1.38223 * 120.01484 * 354.24442 * 21 19 18 23 23 C 1.38216 * 120.02624 * 179.97438 * 22 21 19 24 24 C 1.38263 * 120.05496 * 0.02562 * 23 22 21 25 25 C 1.38178 * 120.02513 * 359.97438 * 24 23 22 26 26 C 1.38441 * 120.01317 * 173.97202 * 21 19 18 27 27 F 1.35097 * 120.02648 * 359.97438 * 26 21 19 28 28 C 1.34759 * 124.17927 * 90.00117 * 15 14 12 29 29 O 1.21236 * 127.15940 * 359.92456 * 28 15 14 30 30 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 31 31 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 32 32 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 33 33 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 34 34 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 35 35 H 0.96993 * 119.99970 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.46932 * 300.00223 * 14 12 2 37 37 H 1.08997 * 109.47392 * 59.99562 * 14 12 2 38 38 H 0.96996 * 126.68857 * 180.12659 * 18 16 15 39 39 H 1.08993 * 109.47001 * 305.12345 * 20 19 18 40 40 H 1.08998 * 109.47112 * 65.12825 * 20 19 18 41 41 H 1.08998 * 109.47017 * 185.12634 * 20 19 18 42 42 H 1.08000 * 119.98428 * 359.95801 * 22 21 19 43 43 H 1.08009 * 119.97124 * 180.02562 * 23 22 21 44 44 H 1.08004 * 119.99127 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.01422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 1 2.0888 1.1010 -2.2416 6 6 3.1192 2.8818 -1.6727 7 7 3.3337 3.2642 -2.9126 8 14 3.7321 3.9296 -0.2528 9 1 5.1072 3.5076 0.1163 10 1 3.7453 5.3574 -0.6610 11 1 2.8310 3.7570 0.9148 12 6 2.1388 -1.1673 -0.0056 13 8 3.3516 -1.1673 -0.0106 14 6 1.3853 -2.4724 -0.0056 15 7 2.3372 -3.5859 -0.0115 16 6 2.8171 -4.1585 -1.1215 17 8 2.5123 -3.8126 -2.2460 18 7 3.6773 -5.1575 -0.8536 19 6 3.7649 -5.2560 0.6135 20 6 3.2824 -6.6273 1.0907 21 6 5.1739 -4.9989 1.0822 22 6 6.1905 -4.8359 0.1600 23 6 7.4827 -4.5995 0.5896 24 6 7.7603 -4.5263 1.9421 25 6 6.7458 -4.6889 2.8659 26 6 5.4496 -4.9202 2.4366 27 9 4.4558 -5.0733 3.3389 28 6 2.8333 -4.1637 1.1002 29 8 2.5865 -3.8706 2.2504 30 1 -0.3634 -0.0049 1.0276 31 1 -0.3634 0.8924 -0.5096 32 1 -0.3634 -0.8874 -0.5181 33 1 1.6106 2.0271 0.5181 34 1 3.1521 1.1371 0.5096 35 1 3.8098 4.0904 -3.0898 36 1 0.7623 -2.5322 0.8868 37 1 0.7549 -2.5280 -0.8930 38 1 4.1455 -5.7082 -1.5005 39 1 2.2774 -6.8111 0.7111 40 1 3.9574 -7.3990 0.7207 41 1 3.2687 -6.6486 2.1804 42 1 5.9749 -4.8936 -0.8967 43 1 8.2763 -4.4719 -0.1319 44 1 8.7706 -4.3419 2.2766 45 1 6.9629 -4.6320 3.9224 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058194674.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:47 Heat of formation + Delta-G solvation = -67.617678 kcal Electronic energy + Delta-G solvation = -34002.991918 eV Core-core repulsion = 29323.237424 eV Total energy + Delta-G solvation = -4679.754494 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.01104 -42.72113 -39.44044 -38.90110 -38.56479 -36.46303 -35.33329 -34.79993 -32.56779 -31.95692 -30.95398 -29.66553 -29.57297 -27.77158 -25.90661 -25.05506 -23.46803 -23.05255 -22.66875 -21.51035 -20.57999 -18.78652 -18.33250 -17.73583 -17.27562 -16.96929 -16.80396 -16.55139 -16.24165 -15.88005 -15.64798 -15.43783 -15.32187 -14.89870 -14.79505 -14.55094 -14.18161 -14.06145 -13.95313 -13.68373 -13.23680 -12.91888 -12.85581 -12.80910 -12.75238 -12.43693 -12.38077 -12.06607 -11.95244 -11.93642 -11.51143 -11.35056 -10.93516 -10.89700 -10.53064 -10.33098 -10.25362 -10.14725 -9.77900 -9.52764 -9.27500 -8.98141 -8.89785 -8.57850 -7.76744 -6.07116 -4.06164 0.76759 0.94382 1.58616 2.02532 2.85034 2.99584 3.19317 3.28985 3.29943 3.35721 3.37751 3.70227 3.82084 3.93305 4.05264 4.38142 4.40457 4.52196 4.72797 4.86397 4.90464 4.98556 5.04515 5.14438 5.16883 5.18763 5.25892 5.37506 5.47685 5.53233 5.58513 5.61010 5.76866 5.81193 5.82913 5.98616 6.12177 6.13528 6.58019 6.61469 6.65746 6.91552 6.95678 7.25460 7.30343 7.60796 8.04430 8.14618 8.46955 8.82514 8.97589 9.52398 11.06257 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.010870 B = 0.003400 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2575.194318 B = 8233.919934 C = 9115.986327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.592 5.592 3 C 0.217 3.783 4 C -0.530 4.530 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.896 5.896 8 Si 0.875 3.125 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.495 3.505 13 O -0.529 6.529 14 C 0.099 3.901 15 N -0.556 5.556 16 C 0.711 3.289 17 O -0.528 6.528 18 N -0.720 5.720 19 C 0.172 3.828 20 C -0.147 4.147 21 C -0.134 4.134 22 C -0.066 4.066 23 C -0.129 4.129 24 C -0.081 4.081 25 C -0.156 4.156 26 C 0.125 3.875 27 F -0.121 7.121 28 C 0.537 3.463 29 O -0.447 6.447 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.439 0.561 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -23.053 10.539 25.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.325 5.325 3 C 0.097 3.903 4 C -0.568 4.568 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.534 5.534 8 Si 0.702 3.298 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.280 3.720 13 O -0.405 6.405 14 C -0.026 4.026 15 N -0.302 5.302 16 C 0.412 3.588 17 O -0.400 6.400 18 N -0.385 5.385 19 C 0.081 3.919 20 C -0.205 4.205 21 C -0.136 4.136 22 C -0.084 4.084 23 C -0.147 4.147 24 C -0.099 4.099 25 C -0.175 4.175 26 C 0.105 3.895 27 F -0.099 7.099 28 C 0.322 3.678 29 O -0.314 6.314 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.284 0.716 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.153 0.847 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.113 -22.433 10.498 24.858 hybrid contribution 0.395 0.630 0.334 0.815 sum 2.508 -21.803 10.832 24.474 Atomic orbital electron populations 1.21750 0.80604 1.03392 1.00775 1.47779 1.06447 1.06804 1.71467 1.19693 0.92454 0.79693 0.98503 1.21329 1.37141 1.07144 0.91202 0.90636 1.24849 0.95213 0.97315 0.95553 1.69898 1.41470 1.23450 1.18630 0.86864 0.80158 0.79771 0.82972 1.19961 1.20993 1.19037 1.20358 0.88454 0.85150 0.78076 1.90695 1.13550 1.86819 1.49440 1.21629 0.90641 0.83814 1.06501 1.45805 1.43712 1.32615 1.08055 1.15719 0.79299 0.79594 0.84185 1.91057 1.62637 1.65858 1.20398 1.45509 1.48603 1.37957 1.06415 1.19979 0.92778 0.97316 0.81838 1.22063 1.02493 0.92246 1.03657 1.19471 0.94083 1.07517 0.92549 1.20864 0.91776 0.96272 0.99525 1.21212 0.96708 1.00624 0.96142 1.21117 0.99209 0.96794 0.92769 1.21162 0.91098 1.03755 1.01441 1.17427 0.85754 1.00685 0.85634 1.91579 1.59665 1.92445 1.66191 1.20511 0.79989 0.82218 0.85094 1.90817 1.58762 1.64462 1.17375 0.93175 0.90043 0.92122 0.94948 0.94604 0.92560 0.86239 0.85746 0.71555 0.90625 0.89989 0.89287 0.84747 0.84803 0.84701 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.24 59.84 0.61 1.80 16 2 N -0.59 -12.57 2.86 -182.96 -0.52 -13.09 16 3 C 0.22 5.46 4.23 -5.20 -0.02 5.44 16 4 C -0.53 -15.63 9.94 -34.44 -0.34 -15.97 16 5 H 0.08 2.46 8.06 -52.49 -0.42 2.03 16 6 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 7 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 8 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 9 H -0.27 -6.95 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 12 C 0.50 10.65 7.74 -10.98 -0.09 10.56 16 13 O -0.53 -13.72 16.01 5.56 0.09 -13.63 16 14 C 0.10 1.58 4.74 -5.20 -0.02 1.55 16 15 N -0.56 -8.95 2.09 -122.02 -0.26 -9.20 16 16 C 0.71 11.30 8.62 -88.02 -0.76 10.54 16 17 O -0.53 -10.20 17.48 5.33 0.09 -10.10 16 18 N -0.72 -8.11 4.71 -54.02 -0.25 -8.36 16 19 C 0.17 1.99 1.03 -133.25 -0.14 1.86 16 20 C -0.15 -1.18 8.77 37.16 0.33 -0.86 16 21 C -0.13 -1.59 4.83 -104.55 -0.50 -2.10 16 22 C -0.07 -0.71 9.38 -39.59 -0.37 -1.08 16 23 C -0.13 -1.21 10.04 -39.58 -0.40 -1.60 16 24 C -0.08 -0.72 10.04 -39.59 -0.40 -1.12 16 25 C -0.16 -1.58 10.03 -39.51 -0.40 -1.98 16 26 C 0.12 1.53 6.83 -39.42 -0.27 1.26 16 27 F -0.12 -1.60 13.22 2.25 0.03 -1.58 16 28 C 0.54 8.16 6.75 -10.56 -0.07 8.09 16 29 O -0.45 -7.60 15.57 5.60 0.09 -7.51 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 33 H 0.03 0.77 7.13 -51.93 -0.37 0.40 16 34 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 35 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 36 H 0.12 1.52 7.97 -51.93 -0.41 1.10 16 37 H 0.12 1.76 7.11 -51.93 -0.37 1.39 16 38 H 0.44 3.52 8.38 -40.82 -0.34 3.17 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.77 6.71 -51.93 -0.35 0.42 16 42 H 0.13 1.26 6.64 -52.49 -0.35 0.91 16 43 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 44 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 45 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -40.34 383.06 -7.22 -47.56 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.43 Total: 1.73 kcal Atomic # 6 Polarization: 21.42 SS G_CDS: -2.94 Total: 18.48 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.26 Total: -58.05 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: 0.27 Total: -31.24 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.03 Total: -1.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -40.34 -7.22 -47.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058194674.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.061 kcal (2) G-P(sol) polarization free energy of solvation -40.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds