Wall clock time and date at job start Tue Mar 31 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99759 * 2 1 4 4 C 1.50699 * 109.46928 * 90.00349 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99939 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99966 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.47326 * 179.97438 * 14 12 2 16 16 C 1.33788 * 124.18181 * 269.70271 * 15 14 12 17 17 O 1.21540 * 123.76870 * 0.03321 * 16 15 14 18 18 N 1.34521 * 112.46133 * 179.86237 * 16 15 14 19 19 C 1.47316 * 106.61777 * 0.38054 * 18 16 15 20 20 C 1.53001 * 110.72725 * 241.18668 * 19 18 16 21 21 C 1.50705 * 110.59932 * 118.30585 * 19 18 16 22 22 C 1.38219 * 120.01309 * 5.55488 * 21 19 18 23 23 C 1.38216 * 120.02628 * 179.72284 * 22 21 19 24 24 C 1.38272 * 120.05102 * 0.54926 * 23 22 21 25 25 C 1.38175 * 120.02176 * 359.72257 * 24 23 22 26 26 C 1.38428 * 120.01008 * 185.82590 * 21 19 18 27 27 F 1.35102 * 120.02965 * 0.02562 * 26 21 19 28 28 C 1.34769 * 124.17630 * 89.99673 * 15 14 12 29 29 O 1.21238 * 127.15810 * 0.02562 * 28 15 14 30 30 H 1.08995 * 109.47445 * 89.99576 * 1 2 3 31 31 H 1.09001 * 109.47057 * 210.00204 * 1 2 3 32 32 H 1.08999 * 109.47333 * 329.99764 * 1 2 3 33 33 H 1.09004 * 109.47073 * 210.00177 * 3 2 1 34 34 H 1.09000 * 109.47212 * 330.00260 * 3 2 1 35 35 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47246 * 300.00009 * 14 12 2 37 37 H 1.08997 * 109.47440 * 59.99942 * 14 12 2 38 38 H 0.96999 * 126.69275 * 180.11832 * 18 16 15 39 39 H 1.09001 * 109.46745 * 174.95251 * 20 19 18 40 40 H 1.08997 * 109.47490 * 294.94583 * 20 19 18 41 41 H 1.09001 * 109.47179 * 54.95459 * 20 19 18 42 42 H 1.08008 * 119.98834 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.98039 * 180.27261 * 23 22 21 44 44 H 1.07999 * 119.99287 * 179.74889 * 24 23 22 45 45 H 1.07999 * 120.01145 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5541 3.6177 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.7322 2.8595 3.9013 10 1 3.4860 4.8999 3.4962 11 1 2.3418 2.9205 4.3045 12 6 2.1389 -1.1671 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 7 2.3374 -3.5857 -0.0018 16 6 2.8206 -4.1603 -1.1091 17 8 2.5192 -3.8164 -2.2353 18 7 3.6801 -5.1587 -0.8370 19 6 3.7633 -5.2547 0.6307 20 6 5.1924 -4.9928 1.1103 21 6 3.2866 -6.6046 1.1016 22 6 2.9624 -7.5832 0.1810 23 6 2.5307 -8.8232 0.6127 24 6 2.4118 -9.0825 1.9656 25 6 2.7300 -8.1039 2.8877 26 6 3.1681 -6.8630 2.4564 27 9 3.4790 -5.9052 3.3571 28 6 2.8302 -4.1616 1.1126 29 8 2.5787 -3.8675 2.2615 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 3.1499 1.1385 -0.5139 34 1 1.6083 2.0285 -0.5138 35 1 4.0309 4.4435 0.8505 36 1 0.7591 -2.5302 0.8897 37 1 0.7584 -2.5298 -0.8902 38 1 4.1501 -5.7106 -1.4815 39 1 5.2133 -4.9800 2.2000 40 1 5.8491 -5.7818 0.7437 41 1 5.5329 -4.0301 0.7290 42 1 3.0503 -7.3802 -0.8762 43 1 2.2817 -9.5887 -0.1073 44 1 2.0705 -10.0504 2.3019 45 1 2.6375 -8.3068 3.9445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058194676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:51 Heat of formation + Delta-G solvation = -72.615463 kcal Electronic energy + Delta-G solvation = -33672.531214 eV Core-core repulsion = 28992.560000 eV Total energy + Delta-G solvation = -4679.971214 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.08544 -42.71193 -39.53261 -38.84372 -38.54573 -36.47010 -35.27149 -34.71440 -32.63653 -32.00061 -31.11036 -29.67842 -29.26708 -27.38391 -25.75051 -25.02798 -23.52861 -23.22730 -22.87669 -21.62526 -20.62566 -18.80681 -18.24510 -17.85562 -17.17946 -16.97110 -16.64223 -16.52265 -16.00967 -15.99308 -15.71029 -15.45811 -15.31378 -14.92505 -14.67923 -14.60894 -14.27707 -14.08215 -13.94330 -13.75759 -13.27511 -12.86854 -12.80119 -12.70926 -12.65897 -12.51105 -12.19765 -12.06234 -11.88322 -11.79166 -11.45159 -11.21482 -10.91443 -10.86608 -10.57556 -10.32249 -10.21633 -10.13627 -9.79914 -9.62347 -9.43970 -9.05251 -8.87513 -8.42112 -7.69841 -6.03094 -4.07884 0.61036 0.75759 1.60921 2.04641 2.83886 2.97500 3.15795 3.27324 3.33427 3.39384 3.43153 3.72407 3.87140 3.91296 3.95738 4.35765 4.41393 4.46511 4.59763 4.80125 4.89516 4.91870 4.99965 5.20816 5.27447 5.28478 5.31530 5.38609 5.44722 5.51719 5.60149 5.63939 5.69264 5.81038 5.87279 5.90900 5.93258 6.18818 6.41378 6.59231 6.96544 7.00342 7.34438 7.42669 7.49863 7.92779 8.04185 8.23325 8.32311 8.86087 9.01230 9.57092 11.05091 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002864 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.805172 B = 9775.820977 C =10704.707321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.597 5.597 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.494 3.506 13 O -0.531 6.531 14 C 0.098 3.902 15 N -0.556 5.556 16 C 0.714 3.286 17 O -0.536 6.536 18 N -0.719 5.719 19 C 0.172 3.828 20 C -0.150 4.150 21 C -0.134 4.134 22 C -0.072 4.072 23 C -0.132 4.132 24 C -0.083 4.083 25 C -0.155 4.155 26 C 0.127 3.873 27 F -0.116 7.116 28 C 0.536 3.464 29 O -0.441 6.441 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.035 0.965 35 H 0.263 0.737 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.439 0.561 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.053 -28.157 -0.607 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.329 5.329 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.278 3.722 13 O -0.408 6.408 14 C -0.027 4.027 15 N -0.302 5.302 16 C 0.415 3.585 17 O -0.409 6.409 18 N -0.384 5.384 19 C 0.081 3.919 20 C -0.208 4.208 21 C -0.136 4.136 22 C -0.091 4.091 23 C -0.150 4.150 24 C -0.101 4.101 25 C -0.174 4.174 26 C 0.107 3.893 27 F -0.094 7.094 28 C 0.321 3.679 29 O -0.307 6.307 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.284 0.716 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.153 0.847 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.687 -27.439 -0.572 27.692 hybrid contribution 0.392 0.418 0.849 1.025 sum -3.295 -27.021 0.277 27.223 Atomic orbital electron populations 1.21721 0.81135 1.02856 1.00795 1.48111 1.06337 1.07523 1.70950 1.19334 0.92597 0.77707 0.97637 1.21429 1.36600 1.06305 0.92219 0.92384 1.24932 0.95307 0.96353 0.97484 1.69933 1.38344 1.14379 1.30744 0.86492 0.78857 0.77480 0.84581 1.20538 1.21124 1.19841 1.20308 0.88450 0.85117 0.78352 1.90683 1.13537 1.86831 1.49756 1.21656 0.90667 0.84048 1.06317 1.45800 1.43696 1.32687 1.07998 1.15690 0.79046 0.79615 0.84174 1.91013 1.63047 1.66479 1.20324 1.45502 1.48567 1.37870 1.06458 1.19997 0.98216 0.91952 0.81753 1.22081 0.90761 1.04214 1.03717 1.19600 1.05979 0.95447 0.92595 1.20877 0.96535 0.92106 0.99538 1.21198 1.00774 0.96960 0.96079 1.21119 0.97250 0.98948 0.92766 1.21210 1.02551 0.92064 1.01571 1.17504 0.99130 0.86894 0.85798 1.91632 1.89763 1.61890 1.66134 1.20480 0.80070 0.82255 0.85127 1.90845 1.58121 1.64290 1.17487 0.93220 0.92532 0.90265 0.93807 0.94682 0.92703 0.86278 0.86098 0.71629 0.89293 0.90143 0.89837 0.84704 0.84895 0.84727 0.84190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.84 0.61 1.86 16 2 N -0.60 -13.03 2.86 -182.96 -0.52 -13.56 16 3 C 0.25 6.61 5.16 -5.19 -0.03 6.58 16 4 C -0.53 -15.31 9.39 -34.44 -0.32 -15.63 16 5 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.90 22.41 29.54 -169.99 -5.02 17.39 16 9 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.49 10.80 7.74 -10.99 -0.09 10.72 16 13 O -0.53 -13.97 16.01 5.56 0.09 -13.89 16 14 C 0.10 1.60 4.73 -5.20 -0.02 1.57 16 15 N -0.56 -9.09 2.09 -122.03 -0.26 -9.34 16 16 C 0.71 11.02 8.62 -88.03 -0.76 10.26 16 17 O -0.54 -9.70 17.48 5.33 0.09 -9.60 16 18 N -0.72 -7.96 4.70 -54.02 -0.25 -8.22 16 19 C 0.17 2.06 1.03 -133.24 -0.14 1.92 16 20 C -0.15 -1.67 8.78 37.16 0.33 -1.34 16 21 C -0.13 -1.33 4.83 -104.56 -0.50 -1.84 16 22 C -0.07 -0.54 9.37 -39.60 -0.37 -0.91 16 23 C -0.13 -0.77 10.04 -39.58 -0.40 -1.17 16 24 C -0.08 -0.49 10.04 -39.59 -0.40 -0.88 16 25 C -0.16 -1.21 10.03 -39.51 -0.40 -1.61 16 26 C 0.13 1.34 6.83 -39.42 -0.27 1.07 16 27 F -0.12 -1.53 13.23 2.25 0.03 -1.50 16 28 C 0.54 8.57 6.75 -10.56 -0.07 8.50 16 29 O -0.44 -8.12 15.60 5.59 0.09 -8.04 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.12 1.68 7.27 -51.93 -0.38 1.30 16 37 H 0.12 1.66 7.82 -51.93 -0.41 1.25 16 38 H 0.44 3.36 8.38 -40.82 -0.34 3.01 16 39 H 0.09 1.04 6.69 -51.93 -0.35 0.70 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.14 0.79 6.63 -52.48 -0.35 0.44 16 43 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 44 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 45 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 386.66 15.07 5.83 5.83 Total: -1.00 -38.85 386.66 -7.57 -46.42 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.46 Total: 0.06 kcal Atomic # 6 Polarization: 23.71 SS G_CDS: -2.92 Total: 20.79 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.30 Total: -57.46 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: 0.27 Total: -31.52 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.03 Total: -1.50 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.85 -7.57 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058194676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.191 kcal (2) G-P(sol) polarization free energy of solvation -38.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds