Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46506 * 119.99759 * 2 1 4 4 C 1.50699 * 109.46928 * 90.00349 * 3 2 1 5 5 H 1.08003 * 119.99963 * 0.02562 * 4 3 2 6 6 C 1.37873 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00518 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99987 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46922 * 90.00621 * 8 6 4 10 10 H 1.48500 * 109.47411 * 210.00442 * 8 6 4 11 11 H 1.48494 * 109.47378 * 330.00637 * 8 6 4 12 12 C 1.34771 * 120.00157 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99939 * 179.97438 * 12 2 1 14 14 C 1.50696 * 119.99966 * 359.97438 * 12 2 1 15 15 N 1.46500 * 109.47326 * 179.97438 * 14 12 2 16 16 C 1.33788 * 124.18181 * 269.70271 * 15 14 12 17 17 O 1.21540 * 123.76870 * 0.03321 * 16 15 14 18 18 N 1.34521 * 112.46133 * 179.86237 * 16 15 14 19 19 C 1.47316 * 106.61777 * 0.38054 * 18 16 15 20 20 C 1.53001 * 110.72725 * 241.18668 * 19 18 16 21 21 C 1.50705 * 110.59932 * 118.30585 * 19 18 16 22 22 C 1.38219 * 120.01309 * 5.55488 * 21 19 18 23 23 C 1.38216 * 120.02628 * 179.72284 * 22 21 19 24 24 C 1.38272 * 120.05102 * 0.54926 * 23 22 21 25 25 C 1.38175 * 120.02176 * 359.72257 * 24 23 22 26 26 C 1.38428 * 120.01008 * 185.82590 * 21 19 18 27 27 F 1.35102 * 120.02965 * 0.02562 * 26 21 19 28 28 C 1.34769 * 124.17630 * 89.99673 * 15 14 12 29 29 O 1.21238 * 127.15810 * 0.02562 * 28 15 14 30 30 H 1.08995 * 109.47445 * 89.99576 * 1 2 3 31 31 H 1.09001 * 109.47057 * 210.00204 * 1 2 3 32 32 H 1.08999 * 109.47333 * 329.99764 * 1 2 3 33 33 H 1.09004 * 109.47073 * 210.00177 * 3 2 1 34 34 H 1.09000 * 109.47212 * 330.00260 * 3 2 1 35 35 H 0.96992 * 120.00316 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47246 * 300.00009 * 14 12 2 37 37 H 1.08997 * 109.47440 * 59.99942 * 14 12 2 38 38 H 0.96999 * 126.69275 * 180.11832 * 18 16 15 39 39 H 1.09001 * 109.46745 * 174.95251 * 20 19 18 40 40 H 1.08997 * 109.47490 * 294.94583 * 20 19 18 41 41 H 1.09001 * 109.47179 * 54.95459 * 20 19 18 42 42 H 1.08008 * 119.98834 * 359.97438 * 22 21 19 43 43 H 1.08005 * 119.98039 * 180.27261 * 23 22 21 44 44 H 1.07999 * 119.99287 * 179.74889 * 24 23 22 45 45 H 1.07999 * 120.01145 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0981 1.0957 2.2417 6 6 3.1268 2.8774 1.6728 7 7 3.5541 3.6177 0.6732 8 14 3.4376 3.4170 3.4340 9 1 4.7322 2.8595 3.9013 10 1 3.4860 4.8999 3.4962 11 1 2.3418 2.9205 4.3045 12 6 2.1389 -1.1671 -0.0005 13 8 3.3516 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 7 2.3374 -3.5857 -0.0018 16 6 2.8206 -4.1603 -1.1091 17 8 2.5192 -3.8164 -2.2353 18 7 3.6801 -5.1587 -0.8370 19 6 3.7633 -5.2547 0.6307 20 6 5.1924 -4.9928 1.1103 21 6 3.2866 -6.6046 1.1016 22 6 2.9624 -7.5832 0.1810 23 6 2.5307 -8.8232 0.6127 24 6 2.4118 -9.0825 1.9656 25 6 2.7300 -8.1039 2.8877 26 6 3.1681 -6.8630 2.4564 27 9 3.4790 -5.9052 3.3571 28 6 2.8302 -4.1616 1.1126 29 8 2.5787 -3.8675 2.2615 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5139 33 1 3.1499 1.1385 -0.5139 34 1 1.6083 2.0285 -0.5138 35 1 4.0309 4.4435 0.8505 36 1 0.7591 -2.5302 0.8897 37 1 0.7584 -2.5298 -0.8902 38 1 4.1501 -5.7106 -1.4815 39 1 5.2133 -4.9800 2.2000 40 1 5.8491 -5.7818 0.7437 41 1 5.5329 -4.0301 0.7290 42 1 3.0503 -7.3802 -0.8762 43 1 2.2817 -9.5887 -0.1073 44 1 2.0705 -10.0504 2.3019 45 1 2.6375 -8.3068 3.9445 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058194676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -100.108654 kcal Electronic energy + Delta-G solvation = -33673.723408 eV Core-core repulsion = 28992.560000 eV Total energy + Delta-G solvation = -4681.163409 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.143 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.89663 -43.86281 -40.75217 -40.06763 -39.73058 -37.59249 -36.82421 -36.23163 -34.79088 -32.89961 -31.69324 -30.89896 -30.43130 -29.09193 -27.34624 -26.12042 -24.99015 -24.39816 -23.73508 -22.73304 -21.69877 -20.34272 -19.31346 -18.88506 -18.70702 -18.42705 -17.98070 -17.48563 -17.35422 -17.29500 -16.70147 -16.66184 -16.50616 -16.31252 -16.28460 -15.76898 -15.42803 -15.25194 -14.95104 -14.70772 -14.53608 -14.37255 -14.02091 -13.87895 -13.66904 -13.53775 -13.50427 -13.34282 -13.19487 -13.18299 -12.82458 -12.65526 -12.60901 -12.24799 -12.18007 -12.02555 -11.75383 -11.66543 -11.47579 -10.84400 -10.69370 -10.52883 -10.04010 -9.68406 -9.53380 -8.27109 -6.41944 -0.00798 0.20221 0.41945 0.89205 1.32801 1.36181 1.45863 1.60447 1.72382 1.87988 2.27106 2.40064 2.50850 2.76425 3.02557 3.04955 3.29368 3.50496 3.51967 3.73154 3.82367 3.98351 4.09698 4.15923 4.29098 4.34826 4.35518 4.39968 4.45712 4.55160 4.69089 4.79372 4.90651 4.92625 4.95821 5.05510 5.13605 5.15966 5.30432 5.42501 5.48450 5.64124 5.75024 5.80047 5.87901 6.00076 6.15352 6.56662 6.67601 6.92347 7.17327 7.32452 8.80379 Molecular weight = 363.14amu Principal moments of inertia in cm(-1) A = 0.014350 B = 0.002864 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.805172 B = 9775.820977 C =10704.707321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.603 5.603 3 C 0.260 3.740 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.927 5.927 8 Si 0.966 3.034 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.262 1.262 12 C 0.481 3.519 13 O -0.589 6.589 14 C 0.107 3.893 15 N -0.565 5.565 16 C 0.710 3.290 17 O -0.566 6.566 18 N -0.692 5.692 19 C 0.182 3.818 20 C -0.147 4.147 21 C -0.147 4.147 22 C -0.073 4.073 23 C -0.122 4.122 24 C -0.073 4.073 25 C -0.159 4.159 26 C 0.094 3.906 27 F -0.142 7.142 28 C 0.524 3.476 29 O -0.474 6.474 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.073 0.927 33 H -0.005 1.005 34 H 0.031 0.969 35 H 0.268 0.732 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.456 0.544 39 H 0.079 0.921 40 H 0.116 0.884 41 H 0.058 0.942 42 H 0.151 0.849 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -31.431 -0.321 31.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.139 3.861 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.190 4.190 7 N -0.567 5.567 8 Si 0.790 3.210 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.186 1.186 12 C 0.268 3.732 13 O -0.470 6.470 14 C -0.018 4.018 15 N -0.310 5.310 16 C 0.411 3.589 17 O -0.441 6.441 18 N -0.359 5.359 19 C 0.091 3.909 20 C -0.205 4.205 21 C -0.149 4.149 22 C -0.091 4.091 23 C -0.140 4.140 24 C -0.091 4.091 25 C -0.178 4.178 26 C 0.074 3.926 27 F -0.120 7.120 28 C 0.311 3.689 29 O -0.343 6.343 30 H 0.097 0.903 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.014 0.986 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.170 0.830 38 H 0.305 0.695 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.077 0.923 42 H 0.168 0.832 43 H 0.184 0.816 44 H 0.186 0.814 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.159 -30.764 -0.300 31.195 hybrid contribution 0.821 1.355 0.722 1.741 sum -4.337 -29.409 0.422 29.730 Atomic orbital electron populations 1.22080 0.77194 1.04548 1.03247 1.48138 1.08804 1.06000 1.70535 1.18796 0.91101 0.80044 0.96135 1.21670 1.37093 1.06609 0.92886 0.93066 1.25847 0.94796 0.96355 1.02031 1.70043 1.38769 1.14842 1.33018 0.85437 0.78618 0.77734 0.79177 1.20832 1.19491 1.18608 1.21329 0.88209 0.86798 0.76849 1.90643 1.16259 1.87880 1.52231 1.21687 0.90250 0.80929 1.08913 1.45988 1.43922 1.32517 1.08609 1.15828 0.79443 0.80133 0.83504 1.90989 1.64347 1.67593 1.21181 1.45343 1.47184 1.36685 1.06647 1.19923 0.97424 0.92088 0.81505 1.22085 0.91114 1.04175 1.03156 1.19469 1.07926 0.94611 0.92906 1.21122 0.96002 0.92178 0.99802 1.21620 0.98800 0.96770 0.96798 1.21555 0.95420 0.99588 0.92491 1.21465 1.02086 0.91392 1.02834 1.17912 1.01216 0.87615 0.85809 1.91564 1.90347 1.63105 1.66996 1.21234 0.80142 0.82849 0.84661 1.90810 1.59325 1.65498 1.18628 0.90315 0.88636 0.90826 0.98645 0.95151 0.92279 0.83810 0.83001 0.69510 0.90240 0.86541 0.92301 0.83181 0.81613 0.81403 0.83098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.14 10.24 127.77 1.31 3.44 16 2 N -0.60 -26.90 2.86 -851.14 -2.43 -29.33 16 3 C 0.26 14.66 5.16 85.63 0.44 15.10 16 4 C -0.54 -32.64 9.39 25.60 0.24 -32.40 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.53 5.46 84.65 0.46 0.99 16 7 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 8 Si 0.97 46.59 29.54 68.60 2.03 48.61 16 9 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.48 21.64 7.74 87.66 0.68 22.32 16 13 O -0.59 -32.75 16.01 -3.03 -0.05 -32.80 16 14 C 0.11 3.41 4.73 85.63 0.41 3.82 16 15 N -0.57 -18.49 2.09 -777.23 -1.63 -20.11 16 16 C 0.71 21.67 8.62 179.44 1.55 23.22 16 17 O -0.57 -20.27 17.48 -3.84 -0.07 -20.34 16 18 N -0.69 -14.66 4.70 -443.25 -2.08 -16.75 16 19 C 0.18 4.29 1.03 2.24 0.00 4.29 16 20 C -0.15 -3.34 8.78 71.98 0.63 -2.71 16 21 C -0.15 -2.73 4.83 -19.82 -0.10 -2.83 16 22 C -0.07 -0.86 9.37 22.26 0.21 -0.65 16 23 C -0.12 -0.90 10.04 22.27 0.22 -0.67 16 24 C -0.07 -0.57 10.04 22.26 0.22 -0.34 16 25 C -0.16 -2.16 10.03 22.31 0.22 -1.94 16 26 C 0.09 1.93 6.83 22.37 0.15 2.08 16 27 F -0.14 -3.88 13.23 44.97 0.59 -3.29 16 28 C 0.52 17.10 6.75 87.94 0.59 17.69 16 29 O -0.47 -18.11 15.60 -2.90 -0.05 -18.16 16 30 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 32 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 33 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 34 H 0.03 1.71 8.07 -2.39 -0.02 1.69 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.14 3.84 7.27 -2.38 -0.02 3.82 16 37 H 0.15 3.87 7.82 -2.39 -0.02 3.85 16 38 H 0.46 6.12 8.38 -92.71 -0.78 5.34 16 39 H 0.08 1.98 6.69 -2.39 -0.02 1.96 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.15 1.23 6.63 -2.91 -0.02 1.21 16 43 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 44 H 0.17 0.20 8.06 -2.91 -0.02 0.18 16 45 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -91.18 386.66 4.13 -87.05 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.28 Total: 11.03 kcal Atomic # 6 Polarization: 44.17 SS G_CDS: 7.25 Total: 51.42 kcal Atomic # 7 Polarization: -117.65 SS G_CDS: -5.86 Total: -123.51 kcal Atomic # 8 Polarization: -71.14 SS G_CDS: -0.16 Total: -71.30 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.59 Total: -3.29 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -91.18 4.13 -87.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058194676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.061 kcal (2) G-P(sol) polarization free energy of solvation -91.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds