Wall clock time and date at job start Tue Mar 31 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99970 * 2 1 4 4 C 1.50701 * 109.46990 * 269.99546 * 3 2 1 5 5 H 1.07997 * 120.00139 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99590 * 179.97438 * 4 3 2 7 7 N 1.31510 * 120.00192 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99628 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47150 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46980 * 120.00251 * 8 6 4 11 11 H 1.48503 * 109.47262 * 240.00390 * 8 6 4 12 12 C 1.34783 * 119.99831 * 180.02562 * 2 1 3 13 13 O 1.21523 * 120.00145 * 184.82127 * 12 2 1 14 14 C 1.48033 * 120.00057 * 4.81675 * 12 2 1 15 15 C 1.39583 * 120.37580 * 141.39994 * 14 12 2 16 16 C 1.37441 * 120.74250 * 180.02562 * 15 14 12 17 17 C 1.40566 * 120.53868 * 359.97438 * 16 15 14 18 18 C 1.40054 * 117.72721 * 359.97438 * 17 16 15 19 19 C 1.36591 * 122.11943 * 0.02562 * 18 17 16 20 20 S 1.77144 * 103.84110 * 180.02562 * 18 17 16 21 21 O 1.42100 * 107.51210 * 247.96191 * 20 18 17 22 22 O 1.42102 * 107.68761 * 112.09774 * 20 18 17 23 23 N 1.67144 * 99.89137 * 0.02562 * 20 18 17 24 24 C 1.46504 * 127.04291 * 179.97438 * 23 20 18 25 25 C 1.53002 * 117.49471 * 171.25319 * 24 23 20 26 26 C 1.52998 * 117.49688 * 239.91044 * 24 23 20 27 27 C 1.34052 * 105.90631 * 0.23799 * 23 20 18 28 28 O 1.21528 * 121.01806 * 179.75687 * 27 23 20 29 29 H 1.08999 * 109.46874 * 265.17978 * 1 2 3 30 30 H 1.09002 * 109.46959 * 25.17593 * 1 2 3 31 31 H 1.08997 * 109.47229 * 145.18359 * 1 2 3 32 32 H 1.08990 * 109.47156 * 30.00510 * 3 2 1 33 33 H 1.09005 * 109.46700 * 150.00144 * 3 2 1 34 34 H 0.97006 * 119.99618 * 179.97438 * 7 6 4 35 35 H 1.07995 * 119.62221 * 0.02562 * 15 14 12 36 36 H 1.08008 * 119.72783 * 179.97438 * 16 15 14 37 37 H 1.07999 * 120.18399 * 179.97438 * 19 18 17 38 38 H 1.08997 * 115.55459 * 25.58425 * 24 23 20 39 39 H 1.09001 * 117.49597 * 215.00734 * 25 24 23 40 40 H 1.09007 * 117.50066 * 0.02562 * 25 24 23 41 41 H 1.08999 * 117.50083 * 359.97438 * 26 24 23 42 42 H 1.08993 * 117.49673 * 145.00311 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1261 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4369 3.4174 -3.4339 9 1 2.8590 2.4173 -4.3673 10 1 2.7989 4.7379 -3.6670 11 1 4.8994 3.5261 -3.6676 12 6 2.1389 -1.1673 -0.0005 13 8 3.3509 -1.1692 0.0879 14 6 1.4027 -2.4469 -0.1087 15 6 1.9198 -3.4967 -0.8697 16 6 1.2423 -4.6878 -0.9757 17 6 0.0137 -4.8717 -0.3181 18 6 -0.4854 -3.8053 0.4404 19 6 0.1813 -2.6183 0.5513 20 16 -2.0123 -4.4255 1.0900 21 8 -3.0660 -3.6976 0.4741 22 8 -1.8576 -4.5677 2.4954 23 7 -2.0049 -5.9594 0.4261 24 6 -3.0247 -6.9979 0.5923 25 6 -2.9039 -8.2520 -0.2760 26 6 -2.5879 -8.3230 1.2201 27 6 -0.8716 -6.0466 -0.2846 28 8 -0.5862 -7.0634 -0.8859 29 1 -0.3633 -0.0864 1.0240 30 1 -0.3633 0.9301 -0.4372 31 1 -0.3633 -0.8437 -0.5867 32 1 1.6085 2.0283 0.5139 33 1 3.1500 1.1383 0.5138 34 1 4.0302 4.4439 -0.8504 35 1 2.8629 -3.3714 -1.3807 36 1 1.6574 -5.4890 -1.5693 37 1 -0.2328 -1.8164 1.1445 38 1 -4.0282 -6.6392 0.8213 39 1 -3.8279 -8.7181 -0.6182 40 1 -2.0653 -8.3044 -0.9704 41 1 -1.5416 -8.4223 1.5092 42 1 -3.3039 -8.8359 1.8621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058203401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:57 Heat of formation + Delta-G solvation = -36.675609 kcal Electronic energy + Delta-G solvation = -30330.329118 eV Core-core repulsion = 25984.577792 eV Total energy + Delta-G solvation = -4345.751326 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.097 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.53445 -40.11754 -38.34934 -37.82345 -37.24189 -36.48359 -35.23618 -34.96413 -32.89898 -31.89219 -31.60901 -28.01147 -26.69797 -25.47929 -24.28563 -23.24646 -22.90540 -22.63999 -21.64574 -20.18061 -19.65582 -18.48190 -17.56013 -17.23453 -17.03018 -16.67797 -16.58814 -16.08796 -15.79143 -15.52586 -15.27102 -15.19468 -14.79034 -14.59242 -14.23047 -14.07441 -13.68825 -13.37928 -13.04459 -12.80436 -12.74893 -12.64229 -12.61743 -12.49860 -12.37300 -12.26038 -12.02797 -11.86959 -11.33100 -11.14202 -11.00163 -10.93636 -10.71746 -10.61389 -10.29484 -10.04127 -9.94077 -9.79850 -9.55460 -9.31763 -8.54924 -7.92232 -6.16037 -4.21904 -0.60007 -0.35588 0.56375 1.64532 1.74638 2.51320 2.73669 2.74708 3.23186 3.25538 3.30661 3.32127 3.37669 3.62810 3.84260 4.12526 4.17753 4.29220 4.34088 4.35404 4.47435 4.54255 4.58945 4.73720 4.90783 5.12817 5.18897 5.23586 5.26487 5.35185 5.42123 5.50138 5.60681 5.63995 5.69251 5.80053 5.84279 6.03432 6.11400 6.81461 6.82546 7.22563 7.31417 7.78903 8.06475 8.08134 8.59922 8.83756 9.43817 10.92121 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.002427 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.157564 B =11532.985667 C =11959.679014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.587 5.587 3 C 0.243 3.757 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.543 3.457 13 O -0.522 6.522 14 C -0.084 4.084 15 C -0.032 4.032 16 C -0.037 4.037 17 C -0.109 4.109 18 C -0.626 4.626 19 C 0.024 3.976 20 S 2.663 3.337 21 O -0.916 6.916 22 O -0.916 6.916 23 N -0.896 5.896 24 C 0.079 3.921 25 C -0.175 4.175 26 C -0.178 4.178 27 C 0.543 3.457 28 O -0.465 6.465 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.107 0.893 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 -21.303 3.002 25.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.318 5.318 3 C 0.124 3.876 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.328 3.672 13 O -0.399 6.399 14 C -0.089 4.089 15 C -0.051 4.051 16 C -0.057 4.057 17 C -0.114 4.114 18 C -0.714 4.714 19 C 0.005 3.995 20 S 2.755 3.245 21 O -0.906 6.906 22 O -0.905 6.905 23 N -0.739 5.739 24 C -0.024 4.024 25 C -0.213 4.213 26 C -0.217 4.217 27 C 0.330 3.670 28 O -0.335 6.335 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.175 0.825 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.168 0.832 39 H 0.125 0.875 40 H 0.149 0.851 41 H 0.121 0.879 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.312 -21.292 3.346 25.872 hybrid contribution 0.797 0.370 -1.433 1.681 sum -13.515 -20.922 1.913 24.980 Atomic orbital electron populations 1.22119 0.81287 1.03949 1.00367 1.48162 1.06401 1.07620 1.69627 1.19464 0.92815 0.77331 0.97979 1.21424 1.37066 1.06616 0.92012 0.92258 1.24936 0.95176 0.96272 0.97612 1.69935 1.38009 1.14303 1.30765 0.86416 0.78137 0.78426 0.84290 1.19767 1.20850 1.20789 1.17958 0.87214 0.82939 0.79119 1.90801 1.12935 1.86565 1.49646 1.20913 0.94453 0.96377 0.97120 1.21474 0.99296 0.90281 0.94038 1.21036 0.91023 0.97668 0.95928 1.20018 0.98002 0.91693 1.01692 1.30490 1.23442 1.02333 1.15089 1.20620 0.91289 0.94015 0.93578 1.03626 0.74042 0.72741 0.74060 1.93705 1.51825 1.68416 1.76621 1.93703 1.85499 1.84207 1.27114 1.55628 1.26391 1.33597 1.58323 1.21597 0.89600 0.82074 1.09097 1.23740 1.05658 0.96773 0.95136 1.23447 1.03747 0.97841 0.96629 1.18377 0.80610 0.88774 0.79271 1.90662 1.72617 1.30071 1.40187 0.92853 0.89552 0.91931 0.94305 0.93268 0.92580 0.82529 0.83057 0.82506 0.83209 0.87487 0.85126 0.87947 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 8.87 59.85 0.53 1.50 16 2 N -0.59 -11.58 2.86 -184.01 -0.53 -12.10 16 3 C 0.24 5.96 5.18 -5.19 -0.03 5.94 16 4 C -0.53 -14.34 9.39 -34.44 -0.32 -14.67 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 8 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.54 10.50 7.38 -12.24 -0.09 10.41 16 13 O -0.52 -12.17 16.46 5.35 0.09 -12.08 16 14 C -0.08 -1.22 5.26 -104.76 -0.55 -1.77 16 15 C -0.03 -0.40 9.58 -39.37 -0.38 -0.77 16 16 C -0.04 -0.39 10.02 -38.99 -0.39 -0.78 16 17 C -0.11 -1.21 6.09 -104.72 -0.64 -1.85 16 18 C -0.63 -7.15 6.51 -39.50 -0.26 -7.40 16 19 C 0.02 0.30 7.55 -39.56 -0.30 0.00 16 20 S 2.66 28.24 6.18 -107.50 -0.66 27.57 16 21 O -0.92 -11.15 18.08 -57.00 -1.03 -12.18 16 22 O -0.92 -11.35 18.09 -57.00 -1.03 -12.38 16 23 N -0.90 -8.80 3.41 -57.78 -0.20 -9.00 16 24 C 0.08 0.60 7.02 -67.93 -0.48 0.12 16 25 C -0.17 -1.23 9.79 -26.69 -0.26 -1.49 16 26 C -0.18 -1.19 10.37 -26.69 -0.28 -1.46 16 27 C 0.54 5.98 7.55 -12.97 -0.10 5.88 16 28 O -0.46 -5.68 14.53 5.34 0.08 -5.60 16 29 H 0.05 0.61 6.88 -51.93 -0.36 0.26 16 30 H 0.09 1.28 8.04 -51.93 -0.42 0.86 16 31 H 0.06 0.79 5.82 -51.93 -0.30 0.48 16 32 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.16 1.81 8.05 -52.49 -0.42 1.39 16 36 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.16 1.64 5.28 -52.49 -0.28 1.36 16 38 H 0.15 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.13 1.21 5.43 -51.93 -0.28 0.93 16 41 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -35.33 371.45 -10.12 -45.45 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -4.52 Total: -1.83 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -3.63 Total: -4.74 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.01 Total: -45.88 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.90 Total: -42.24 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 28.24 SS G_CDS: -0.66 Total: 27.57 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.33 -10.12 -45.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058203401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.776 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds