Wall clock time and date at job start Tue Mar 31 2020 05:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39758 * 125.83579 * 2 1 4 4 C 1.36106 * 107.82596 * 180.14322 * 3 2 1 5 5 N 1.39473 * 126.21635 * 179.84282 * 4 3 2 6 6 C 1.34782 * 120.00011 * 359.68914 * 5 4 3 7 7 O 1.21293 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00119 * 180.02562 * 6 5 4 9 9 H 1.09007 * 109.46943 * 305.00031 * 8 6 5 10 10 C 1.53003 * 109.47264 * 64.99910 * 8 6 5 11 11 O 1.42897 * 109.46938 * 185.00072 * 8 6 5 12 12 C 1.35901 * 116.99834 * 155.03462 * 11 8 6 13 13 C 1.38763 * 120.04893 * 5.42876 * 12 11 8 14 14 C 1.38135 * 119.97109 * 179.97438 * 13 12 11 15 15 C 1.38270 * 120.06678 * 0.27778 * 14 13 12 16 16 C 1.38363 * 120.09577 * 359.44430 * 15 14 13 17 17 Cl 1.73603 * 119.98539 * 180.30112 * 16 15 14 18 18 C 1.38288 * 120.03049 * 0.55529 * 16 15 14 19 19 N 1.35254 * 107.56920 * 359.58364 * 4 3 2 20 20 C 1.46503 * 126.04969 * 180.23151 * 19 4 3 21 21 C 1.50703 * 109.47402 * 89.99543 * 20 19 4 22 22 H 1.08001 * 119.99988 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00024 * 180.02562 * 21 20 19 24 24 N 1.31518 * 120.00209 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00088 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47093 * 0.02562 * 25 23 21 27 27 H 1.48498 * 109.47481 * 119.99704 * 25 23 21 28 28 H 1.48498 * 109.47340 * 239.99760 * 25 23 21 29 29 N 1.30849 * 125.84093 * 179.66670 * 2 1 3 30 30 H 1.09002 * 109.47469 * 270.29929 * 1 2 3 31 31 H 1.08999 * 109.47293 * 30.30895 * 1 2 3 32 32 H 1.09006 * 109.46855 * 150.30494 * 1 2 3 33 33 H 1.08002 * 126.08680 * 359.97438 * 3 2 1 34 34 H 0.97003 * 120.00189 * 179.69452 * 5 4 3 35 35 H 1.08999 * 109.47079 * 180.02562 * 10 8 6 36 36 H 1.08996 * 109.46828 * 300.00191 * 10 8 6 37 37 H 1.08991 * 109.46991 * 59.99843 * 10 8 6 38 38 H 1.08001 * 120.01948 * 359.95773 * 13 12 11 39 39 H 1.07989 * 119.96781 * 179.97438 * 14 13 12 40 40 H 1.07999 * 119.95255 * 179.72427 * 15 14 13 41 41 H 1.07998 * 120.03339 * 179.74072 * 18 16 15 42 42 H 1.08998 * 109.47255 * 209.99416 * 20 19 4 43 43 H 1.09002 * 109.47248 * 329.99662 * 20 19 4 44 44 H 0.97003 * 120.00233 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5275 -0.0074 6 6 4.6156 2.8685 -0.0149 7 8 3.5094 3.3662 -0.0175 8 6 5.8382 3.7495 -0.0200 9 1 6.4777 3.4884 0.8232 10 6 6.6082 3.5458 -1.3264 11 8 5.4400 5.1175 0.0898 12 6 6.3470 5.9839 0.6128 13 6 7.6320 5.5509 0.9073 14 6 8.5528 6.4331 1.4384 15 6 8.1936 7.7459 1.6821 16 6 6.9148 8.1821 1.3842 17 17 6.4693 9.8330 1.6841 18 6 5.9898 7.3024 0.8524 19 7 3.6092 -0.6403 0.0042 20 6 4.7870 -1.5115 0.0087 21 6 5.1914 -1.8024 1.4310 22 1 4.6276 -1.3801 2.2498 23 6 6.2815 -2.6066 1.6870 24 7 6.9684 -3.1204 0.6900 25 14 6.7832 -2.9666 3.4500 26 1 5.8544 -2.2752 4.3799 27 1 6.7260 -4.4306 3.6919 28 1 8.1674 -2.4807 3.6799 29 7 2.2732 -1.0607 0.0062 30 1 -0.3634 0.0054 1.0276 31 1 -0.3634 0.8872 -0.5186 32 1 -0.3633 -0.8928 -0.5091 33 1 1.9901 2.1597 -0.0004 34 1 5.6358 1.1296 -0.0050 35 1 7.4928 4.1826 -1.3298 36 1 6.9119 2.5023 -1.4101 37 1 5.9688 3.8068 -2.1695 38 1 7.9121 4.5245 0.7218 39 1 9.5527 6.0959 1.6680 40 1 8.9137 8.4330 2.1015 41 1 4.9904 7.6418 0.6237 42 1 4.5498 -2.4459 -0.4999 43 1 5.6083 -1.0149 -0.5081 44 1 7.7356 -3.6859 0.8702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224049.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:26 Heat of formation + Delta-G solvation = 26.068974 kcal Electronic energy + Delta-G solvation = -29319.968697 eV Core-core repulsion = 25072.613136 eV Total energy + Delta-G solvation = -4247.355561 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20418 -40.59571 -39.26308 -37.86254 -36.58862 -34.89826 -33.86342 -32.66609 -32.05962 -30.98642 -30.09789 -29.18660 -28.23675 -26.10125 -25.15305 -23.40756 -23.06564 -22.67780 -21.17257 -19.89615 -19.33922 -18.79297 -17.38433 -16.86969 -16.57637 -16.35398 -16.15062 -16.02786 -15.25982 -15.09165 -14.91838 -14.59394 -14.13994 -14.09822 -13.98883 -13.62351 -13.49274 -13.00680 -12.82115 -12.77702 -12.55697 -12.44961 -12.17758 -12.12065 -11.92231 -11.82689 -11.63639 -11.47705 -11.27703 -11.19154 -11.11098 -10.96617 -10.48736 -10.40296 -9.96467 -9.85161 -9.56256 -9.23744 -8.79061 -8.63078 -7.99097 -7.52793 -6.40078 -4.48712 0.73622 0.95969 1.64882 2.08644 2.24537 2.97383 3.09871 3.14883 3.19617 3.25111 3.25968 3.51898 3.71670 4.17985 4.23040 4.41280 4.42974 4.54616 4.65972 4.71154 4.83629 4.93390 5.03591 5.21461 5.26950 5.30939 5.44923 5.57711 5.72401 5.77944 5.88836 5.94804 6.01303 6.07277 6.10096 6.12876 6.20107 6.33360 6.58733 6.75972 6.93937 6.98355 7.40848 7.49217 7.54847 7.72639 7.80815 8.14746 8.55123 8.64292 9.19381 10.66977 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.009470 B = 0.002453 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2956.055808 B =11410.688993 C =13415.032062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.524 3.476 7 O -0.489 6.489 8 C 0.073 3.927 9 H 0.107 0.893 10 C -0.179 4.179 11 O -0.279 6.279 12 C 0.148 3.852 13 C -0.208 4.208 14 C -0.065 4.065 15 C -0.151 4.151 16 C 0.004 3.996 17 Cl -0.064 7.064 18 C -0.143 4.143 19 N -0.343 5.343 20 C 0.256 3.744 21 C -0.540 4.540 22 H 0.066 0.934 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.280 1.280 29 N -0.282 5.282 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 19.876 -1.666 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.078 3.922 5 N -0.282 5.282 6 C 0.308 3.692 7 O -0.361 6.361 8 C 0.013 3.987 9 H 0.124 0.876 10 C -0.237 4.237 11 O -0.191 6.191 12 C 0.102 3.898 13 C -0.227 4.227 14 C -0.083 4.083 15 C -0.169 4.169 16 C -0.023 4.023 17 Cl -0.035 7.035 18 C -0.162 4.162 19 N -0.128 5.128 20 C 0.138 3.862 21 C -0.579 4.579 22 H 0.084 0.916 23 C -0.137 4.137 24 N -0.527 5.527 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.206 1.206 29 N -0.108 5.108 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.323 18.981 -1.762 19.350 hybrid contribution 1.218 0.236 1.051 1.626 sum 4.541 19.217 -0.711 19.759 Atomic orbital electron populations 1.20029 0.87494 1.02395 1.02223 1.22038 0.96575 0.90964 1.01745 1.21287 0.89057 1.00531 1.21603 1.17828 0.87681 0.83348 1.03298 1.42519 1.08590 1.04942 1.72165 1.19859 0.90479 0.81498 0.77400 1.90689 1.26091 1.73450 1.45854 1.22127 0.94513 0.80711 1.01336 0.87593 1.22392 1.00953 1.04208 0.96137 1.86203 1.39335 1.16620 1.76917 1.18794 0.88277 0.89725 0.93053 1.21496 0.93267 1.01698 1.06190 1.20921 0.99440 0.92167 0.95767 1.20978 0.95027 0.96908 1.04035 1.20562 0.94574 0.86037 1.01099 1.98384 1.93021 1.17658 1.94394 1.20219 1.00988 0.90608 1.04372 1.49364 1.06608 1.02029 1.54827 1.19641 0.77776 0.89823 0.98962 1.21382 1.13245 1.31940 0.91331 0.91626 1.24935 0.95706 0.94823 0.98210 1.69924 1.19138 1.32558 1.31096 0.86313 0.78340 0.78536 0.83621 1.19525 1.20486 1.20612 1.77374 0.86054 1.21733 1.25621 0.91256 0.91089 0.91499 0.82123 0.74625 0.90206 0.89589 0.90209 0.84319 0.84532 0.84760 0.83842 0.92445 0.93831 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 4 C 0.30 6.15 7.66 -153.17 -1.17 4.98 16 5 N -0.63 -10.43 5.38 -11.46 -0.06 -10.49 16 6 C 0.52 8.03 7.14 -10.98 -0.08 7.95 16 7 O -0.49 -9.09 13.64 -14.31 -0.20 -9.29 16 8 C 0.07 0.82 2.63 -27.88 -0.07 0.75 16 9 H 0.11 0.97 6.31 -51.92 -0.33 0.64 16 10 C -0.18 -1.57 9.13 37.16 0.34 -1.23 16 11 O -0.28 -3.53 9.34 -39.29 -0.37 -3.89 16 12 C 0.15 1.60 6.60 -39.22 -0.26 1.34 16 13 C -0.21 -1.82 8.24 -39.42 -0.32 -2.15 16 14 C -0.06 -0.49 10.04 -39.61 -0.40 -0.89 16 15 C -0.15 -1.21 9.83 -39.52 -0.39 -1.60 16 16 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 17 Cl -0.06 -0.56 28.95 -51.86 -1.50 -2.06 16 18 C -0.14 -1.50 9.77 -39.40 -0.38 -1.88 16 19 N -0.34 -7.81 3.60 -61.57 -0.22 -8.03 16 20 C 0.26 6.16 6.01 -5.19 -0.03 6.13 16 21 C -0.54 -14.07 9.39 -34.44 -0.32 -14.40 16 22 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -23.55 13.29 55.43 0.74 -22.81 16 25 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 29 N -0.28 -6.46 12.56 33.65 0.42 -6.03 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.16 3.19 5.83 -52.49 -0.31 2.89 16 34 H 0.42 6.09 7.75 -40.82 -0.32 5.77 16 35 H 0.08 0.56 6.91 -51.93 -0.36 0.20 16 36 H 0.09 0.67 7.92 -51.93 -0.41 0.26 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.14 0.98 5.43 -52.49 -0.28 0.70 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 44 H 0.27 6.70 8.31 -40.82 -0.34 6.37 16 LS Contribution 391.72 15.07 5.90 5.90 Total: -1.00 -31.66 391.72 -9.67 -41.33 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.32 Total: 6.29 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -4.04 Total: -5.99 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 0.88 Total: -47.37 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.56 Total: -13.18 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.66 -9.67 -41.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224049.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.401 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds