Wall clock time and date at job start Tue Mar 31 2020 05:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39756 * 125.83803 * 2 1 4 4 C 1.36106 * 107.82845 * 180.14173 * 3 2 1 5 5 N 1.39472 * 126.21754 * 179.90632 * 4 3 2 6 6 C 1.34781 * 119.99588 * 359.68259 * 5 4 3 7 7 O 1.21286 * 120.00466 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99691 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.47182 * 55.00253 * 8 6 5 10 10 C 1.53011 * 109.47087 * 295.00552 * 8 6 5 11 11 O 1.42898 * 109.47144 * 175.00536 * 8 6 5 12 12 C 1.35902 * 116.99738 * 204.93055 * 11 8 6 13 13 C 1.38767 * 120.05080 * 354.52969 * 12 11 8 14 14 C 1.38122 * 119.96778 * 180.02562 * 13 12 11 15 15 C 1.38269 * 120.07335 * 359.97438 * 14 13 12 16 16 C 1.38363 * 120.09451 * 0.02742 * 15 14 13 17 17 Cl 1.73607 * 119.98416 * 179.97438 * 16 15 14 18 18 C 1.38282 * 120.02977 * 359.71748 * 16 15 14 19 19 N 1.35259 * 107.56560 * 359.63808 * 4 3 2 20 20 C 1.46496 * 126.04592 * 180.22121 * 19 4 3 21 21 C 1.50702 * 109.46864 * 90.00444 * 20 19 4 22 22 H 1.07995 * 120.00111 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00088 * 179.97438 * 21 20 19 24 24 N 1.31513 * 120.00104 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99890 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47036 * 60.00622 * 25 23 21 27 27 H 1.48501 * 109.46874 * 180.02562 * 25 23 21 28 28 H 1.48493 * 109.47299 * 300.00112 * 25 23 21 29 29 N 1.30849 * 125.83709 * 179.73887 * 2 1 3 30 30 H 1.09007 * 109.47250 * 270.23675 * 1 2 3 31 31 H 1.08999 * 109.47293 * 30.23460 * 1 2 3 32 32 H 1.09002 * 109.47374 * 150.23573 * 1 2 3 33 33 H 1.08008 * 126.08421 * 0.02922 * 3 2 1 34 34 H 0.97000 * 120.00157 * 179.68895 * 5 4 3 35 35 H 1.08992 * 109.47065 * 60.00124 * 10 8 6 36 36 H 1.08998 * 109.46866 * 299.99895 * 10 8 6 37 37 H 1.08999 * 109.46612 * 180.02562 * 10 8 6 38 38 H 1.07995 * 120.01273 * 359.97438 * 13 12 11 39 39 H 1.08009 * 119.96496 * 180.02562 * 14 13 12 40 40 H 1.07999 * 119.95218 * 179.97438 * 15 14 13 41 41 H 1.08005 * 120.03564 * 180.30508 * 18 16 15 42 42 H 1.09000 * 109.47249 * 210.00357 * 20 19 4 43 43 H 1.08999 * 109.47708 * 330.01074 * 20 19 4 44 44 H 0.96998 * 119.99865 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7512 1.5275 -0.0061 6 6 4.6155 2.8684 -0.0124 7 8 3.5095 3.3661 -0.0150 8 6 5.8382 3.7494 -0.0161 9 1 6.4778 3.4797 -0.8565 10 6 6.6081 3.5589 1.2923 11 8 5.4401 5.1162 -0.1399 12 6 6.3475 5.9774 -0.6709 13 6 7.6330 5.5417 -0.9595 14 6 8.5539 6.4185 -1.4986 15 6 8.1963 7.7300 -1.7517 16 6 6.9153 8.1674 -1.4650 17 17 6.4696 9.8149 -1.7833 18 6 5.9885 7.2917 -0.9301 19 7 3.6092 -0.6404 0.0030 20 6 4.7870 -1.5115 0.0069 21 6 5.1908 -1.8038 1.4291 22 1 4.6264 -1.3831 2.2480 23 6 6.2804 -2.6092 1.6847 24 7 6.9674 -3.1219 0.6874 25 14 6.7814 -2.9708 3.4476 26 1 5.6623 -3.6473 4.1513 27 1 7.9752 -3.8540 3.4516 28 1 7.1053 -1.6984 4.1411 29 7 2.2731 -1.0608 0.0048 30 1 -0.3634 0.0042 1.0277 31 1 -0.3634 0.8879 -0.5175 32 1 -0.3634 -0.8921 -0.5102 33 1 1.9901 2.1597 0.0004 34 1 5.6358 1.1295 -0.0038 35 1 6.9118 2.5164 1.3867 36 1 5.9685 3.8286 2.1327 37 1 7.4922 4.1965 1.2897 38 1 7.9134 4.5177 -0.7618 39 1 9.5544 6.0792 -1.7236 40 1 8.9181 8.4140 -2.1729 41 1 4.9871 7.6318 -0.7109 42 1 4.5498 -2.4454 -0.5027 43 1 5.6084 -1.0144 -0.5091 44 1 7.7342 -3.6882 0.8673 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058224050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:30 Heat of formation + Delta-G solvation = 26.126581 kcal Electronic energy + Delta-G solvation = -29306.013971 eV Core-core repulsion = 25058.660908 eV Total energy + Delta-G solvation = -4247.353063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 363.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20506 -40.59917 -39.26598 -37.86809 -36.59729 -34.89774 -33.86190 -32.65342 -32.05809 -30.99186 -30.10263 -29.18510 -28.23301 -26.09881 -25.13350 -23.41255 -23.06909 -22.67910 -21.17497 -19.89582 -19.33692 -18.79834 -17.38547 -16.85676 -16.59277 -16.33174 -16.16276 -16.02715 -15.25982 -15.11850 -14.91967 -14.53265 -14.21883 -14.07025 -13.99321 -13.61562 -13.48934 -12.99613 -12.82579 -12.73008 -12.55136 -12.42001 -12.17782 -12.12176 -11.92399 -11.81984 -11.63147 -11.47500 -11.28816 -11.19299 -11.14293 -10.92944 -10.49633 -10.39520 -9.96301 -9.89075 -9.56175 -9.24872 -8.78076 -8.63860 -7.99156 -7.52825 -6.39629 -4.48519 0.72494 0.94951 1.64046 2.08761 2.24247 2.96880 3.12878 3.15575 3.18455 3.23221 3.24024 3.52138 3.71627 4.18092 4.22506 4.41095 4.42181 4.56206 4.64894 4.70189 4.83312 4.93628 5.02522 5.26945 5.31006 5.31397 5.45086 5.57784 5.74416 5.82466 5.88134 5.93675 6.01235 6.07154 6.10086 6.12435 6.19972 6.33383 6.58729 6.76077 6.93705 6.98430 7.40877 7.49124 7.54743 7.72898 7.80933 8.14797 8.54881 8.64045 9.19378 10.67367 Molecular weight = 363.11amu Principal moments of inertia in cm(-1) A = 0.010653 B = 0.002342 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.833118 B =11951.258440 C =13967.384626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.301 3.699 5 N -0.633 5.633 6 C 0.523 3.477 7 O -0.489 6.489 8 C 0.075 3.925 9 H 0.105 0.895 10 C -0.181 4.181 11 O -0.279 6.279 12 C 0.148 3.852 13 C -0.208 4.208 14 C -0.065 4.065 15 C -0.151 4.151 16 C 0.004 3.996 17 Cl -0.064 7.064 18 C -0.143 4.143 19 N -0.343 5.343 20 C 0.256 3.744 21 C -0.542 4.542 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.274 1.274 29 N -0.282 5.282 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.417 0.583 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 19.831 -4.518 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.078 3.922 5 N -0.282 5.282 6 C 0.307 3.693 7 O -0.361 6.361 8 C 0.014 3.986 9 H 0.122 0.878 10 C -0.238 4.238 11 O -0.191 6.191 12 C 0.102 3.898 13 C -0.227 4.227 14 C -0.083 4.083 15 C -0.170 4.170 16 C -0.023 4.023 17 Cl -0.035 7.035 18 C -0.162 4.162 19 N -0.128 5.128 20 C 0.139 3.861 21 C -0.580 4.580 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.733 3.267 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.200 1.200 29 N -0.108 5.108 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.179 0.821 34 H 0.254 0.746 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.341 18.932 -4.527 19.750 hybrid contribution 1.201 0.251 0.911 1.528 sum 4.542 19.183 -3.615 20.042 Atomic orbital electron populations 1.20029 0.87496 1.02395 1.02222 1.22038 0.96575 0.90964 1.01749 1.21287 0.89058 1.00531 1.21606 1.17830 0.87681 0.83350 1.03297 1.42519 1.08592 1.04940 1.72165 1.19863 0.90486 0.81499 0.77403 1.90688 1.26100 1.73445 1.45856 1.22125 0.94448 0.80707 1.01280 0.87760 1.22410 1.00901 1.04498 0.96037 1.86208 1.39291 1.16952 1.76631 1.18800 0.88287 0.89822 0.92914 1.21491 0.93275 1.01761 1.06157 1.20918 0.99419 0.92197 0.95775 1.20976 0.94996 0.96896 1.04106 1.20563 0.94535 0.86106 1.01059 1.98385 1.93019 1.17992 1.94056 1.20225 1.00980 0.90756 1.04242 1.49366 1.06608 1.02028 1.54829 1.19630 0.77766 0.89809 0.98939 1.21300 1.13334 1.32096 0.91285 0.91719 1.24932 0.95696 0.94807 0.98187 1.69904 1.19146 1.32451 1.31210 0.86417 0.78145 0.78539 0.83639 1.19831 1.20883 1.19957 1.77376 0.86054 1.21728 1.25619 0.91253 0.91093 0.91500 0.82123 0.74622 0.89289 0.90164 0.90264 0.84329 0.84541 0.84763 0.83838 0.92466 0.93849 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 4 C 0.30 6.15 7.66 -153.16 -1.17 4.97 16 5 N -0.63 -10.43 5.38 -11.46 -0.06 -10.50 16 6 C 0.52 8.03 7.14 -10.98 -0.08 7.95 16 7 O -0.49 -9.10 13.64 -14.31 -0.20 -9.29 16 8 C 0.07 0.84 2.64 -27.88 -0.07 0.76 16 9 H 0.10 0.90 6.31 -51.93 -0.33 0.57 16 10 C -0.18 -1.73 9.12 37.16 0.34 -1.39 16 11 O -0.28 -3.52 9.34 -39.29 -0.37 -3.89 16 12 C 0.15 1.59 6.60 -39.22 -0.26 1.33 16 13 C -0.21 -1.78 8.24 -39.43 -0.32 -2.10 16 14 C -0.06 -0.47 10.04 -39.61 -0.40 -0.87 16 15 C -0.15 -1.18 9.83 -39.52 -0.39 -1.57 16 16 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 17 Cl -0.06 -0.55 28.95 -51.86 -1.50 -2.05 16 18 C -0.14 -1.48 9.77 -39.40 -0.38 -1.86 16 19 N -0.34 -7.80 3.60 -61.58 -0.22 -8.03 16 20 C 0.26 6.17 6.01 -5.19 -0.03 6.14 16 21 C -0.54 -14.04 9.39 -34.44 -0.32 -14.37 16 22 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 23 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 24 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 25 Si 0.91 20.04 29.54 -169.99 -5.02 15.01 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 N -0.28 -6.45 12.56 33.65 0.42 -6.03 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 3.19 5.83 -52.48 -0.31 2.88 16 34 H 0.42 6.09 7.75 -40.82 -0.32 5.77 16 35 H 0.09 0.81 7.92 -51.93 -0.41 0.40 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.61 6.91 -51.93 -0.36 0.25 16 38 H 0.14 0.95 5.43 -52.49 -0.28 0.66 16 39 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 43 H 0.04 1.00 7.50 -51.93 -0.39 0.61 16 44 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -31.47 391.71 -9.67 -41.14 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.32 Total: 6.51 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -4.04 Total: -5.99 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.88 Total: -47.34 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.56 Total: -13.18 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.47 -9.67 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058224050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.269 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds