Wall clock time and date at job start Tue Mar 31 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47174 * 15.73451 * 3 2 1 5 5 N 1.46508 * 109.46921 * 185.45764 * 4 3 2 6 6 C 1.46492 * 120.00070 * 278.12452 * 5 4 3 7 7 C 1.50705 * 109.47131 * 269.99770 * 6 5 4 8 8 H 1.07999 * 119.99576 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00235 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99941 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99980 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47047 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47026 * 120.00154 * 11 9 7 14 14 H 1.48500 * 109.46883 * 239.99685 * 11 9 7 15 15 C 1.34780 * 119.99688 * 98.11970 * 5 4 3 16 16 O 1.21586 * 119.99630 * 185.89945 * 15 5 4 17 17 C 1.47605 * 120.00117 * 5.90504 * 15 5 4 18 18 C 1.39709 * 120.04488 * 134.32139 * 17 15 5 19 19 C 1.37966 * 120.05539 * 180.02562 * 18 17 15 20 20 Cl 1.73600 * 120.05157 * 180.02562 * 19 18 17 21 21 C 1.38867 * 119.89266 * 359.97438 * 19 18 17 22 22 C 1.38983 * 120.29299 * 0.02562 * 21 19 18 23 23 C 1.38077 * 120.22482 * 359.97438 * 22 21 19 24 24 O 1.36502 * 119.58516 * 179.97438 * 22 21 19 25 25 C 1.42715 * 115.88351 * 68.28947 * 24 22 21 26 26 C 1.52066 * 110.86725 * 275.52757 * 25 24 22 27 27 C 1.52069 * 112.28434 * 64.85312 * 26 25 24 28 28 O 1.36343 * 120.15240 * 179.97438 * 21 19 18 29 29 H 1.09005 * 109.46860 * 255.73280 * 3 2 1 30 30 H 1.09002 * 109.47199 * 135.74051 * 3 2 1 31 31 H 1.08997 * 109.46979 * 65.46289 * 4 3 2 32 32 H 1.08993 * 109.47494 * 305.45610 * 4 3 2 33 33 H 1.09006 * 109.47605 * 29.99596 * 6 5 4 34 34 H 1.09006 * 109.47462 * 149.99903 * 6 5 4 35 35 H 0.96996 * 119.99553 * 180.02562 * 10 9 7 36 36 H 1.08003 * 119.96977 * 359.97438 * 18 17 15 37 37 H 1.07999 * 120.19227 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.08843 * 155.21541 * 25 24 22 39 39 H 1.09004 * 109.24924 * 35.94140 * 25 24 22 40 40 H 1.08998 * 108.90456 * 304.15921 * 26 25 24 41 41 H 1.09005 * 108.90375 * 185.54184 * 26 25 24 42 42 H 1.09002 * 109.21620 * 55.55288 * 27 26 25 43 43 H 1.09003 * 109.20919 * 174.92183 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3876 -0.3912 5 7 4.5779 -1.4245 -0.2653 6 6 5.4195 -0.8946 -1.3408 7 6 5.7288 -1.9937 -2.3245 8 1 5.3372 -2.9874 -2.1646 9 6 6.5117 -1.7306 -3.4285 10 7 6.9882 -0.5204 -3.6235 11 14 6.8945 -3.0928 -4.6481 12 1 6.2430 -4.3515 -4.2048 13 1 6.3802 -2.7155 -5.9891 14 1 8.3640 -3.2941 -4.7202 15 6 5.1458 -1.9459 0.8402 16 8 6.3502 -1.8801 0.9936 17 6 4.3058 -2.5970 1.8645 18 6 4.6898 -3.8263 2.4060 19 6 3.9045 -4.4353 3.3631 20 17 4.3820 -5.9625 4.0363 21 6 2.7321 -3.8241 3.7877 22 6 2.3454 -2.6012 3.2524 23 6 3.1249 -1.9842 2.2942 24 8 1.1899 -2.0135 3.6800 25 6 1.1917 -1.5430 5.0273 26 6 0.8447 -2.6650 5.9933 27 6 1.8952 -3.7644 6.0016 28 8 1.9519 -4.4214 4.7329 29 1 2.9712 0.2541 0.9960 30 1 2.9711 0.7368 -0.7172 31 1 2.8375 -1.6008 -1.4224 32 1 2.6782 -2.1358 0.2677 33 1 4.8925 -0.0882 -1.8510 34 1 6.3492 -0.5117 -0.9197 35 1 7.5386 -0.3353 -4.4003 36 1 5.6017 -4.3007 2.0745 37 1 2.8237 -1.0341 1.8783 38 1 0.4572 -0.7439 5.1268 39 1 2.1802 -1.1532 5.2705 40 1 -0.1144 -3.0952 5.7050 41 1 0.7582 -2.2517 6.9983 42 1 2.8691 -3.3284 6.2241 43 1 1.6447 -4.4942 6.7715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:24 Heat of formation + Delta-G solvation = -45.429607 kcal Electronic energy + Delta-G solvation = -30764.035887 eV Core-core repulsion = 26415.861253 eV Total energy + Delta-G solvation = -4348.174634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30416 -39.73012 -37.91976 -37.49624 -36.93921 -36.38692 -35.39507 -33.30885 -32.93240 -31.15287 -30.67957 -29.68132 -27.52690 -26.79835 -24.30221 -23.87295 -23.26865 -22.12449 -21.95644 -19.51005 -18.54996 -17.80521 -17.71022 -17.17805 -16.53643 -16.43297 -15.98852 -15.83572 -15.59506 -15.12027 -14.90677 -14.61965 -14.41762 -14.24176 -14.08687 -13.99399 -13.55028 -13.33432 -12.94611 -12.89620 -12.55148 -12.50829 -12.28748 -12.06360 -11.79237 -11.68306 -11.50569 -11.30923 -11.30029 -11.15429 -10.95930 -10.88165 -10.75810 -10.68733 -10.31872 -10.24098 -9.76240 -9.34793 -8.89701 -8.75996 -8.52026 -7.97378 -6.14096 -4.19130 0.50673 0.76923 1.85216 2.65233 2.78719 2.83361 3.08310 3.21767 3.26208 3.34607 3.36557 3.45060 3.68086 4.11958 4.25559 4.31722 4.37663 4.57711 4.68432 4.73661 4.82407 4.87309 4.90214 4.92944 4.99876 5.05341 5.13347 5.21674 5.32636 5.34636 5.37629 5.59805 5.60893 5.76562 5.79986 5.97461 6.06072 6.07481 6.73740 6.82526 7.17014 7.23981 7.33032 7.58634 7.81829 8.07188 8.10187 8.64740 8.87158 9.46966 10.94052 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.003355 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.944805 B = 8344.958944 C =10213.680046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C 0.212 3.788 3 C -0.055 4.055 4 C 0.104 3.896 5 N -0.584 5.584 6 C 0.243 3.757 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.554 3.446 16 O -0.519 6.519 17 C -0.093 4.093 18 C -0.054 4.054 19 C -0.039 4.039 20 Cl -0.046 7.046 21 C 0.085 3.915 22 C 0.072 3.928 23 C -0.101 4.101 24 O -0.310 6.310 25 C 0.057 3.943 26 C -0.187 4.187 27 C 0.059 3.941 28 O -0.307 6.307 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.264 0.736 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.027 -2.373 19.392 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.111 5.111 2 C -0.106 4.106 3 C -0.096 4.096 4 C -0.022 4.022 5 N -0.315 5.315 6 C 0.125 3.875 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.339 3.661 16 O -0.396 6.396 17 C -0.097 4.097 18 C -0.073 4.073 19 C -0.066 4.066 20 Cl -0.017 7.017 21 C 0.040 3.960 22 C 0.028 3.972 23 C -0.119 4.119 24 O -0.226 6.226 25 C -0.018 4.018 26 C -0.225 4.225 27 C -0.016 4.016 28 O -0.223 6.223 29 H 0.126 0.874 30 H 0.142 0.858 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.185 -2.484 19.267 22.417 hybrid contribution 0.769 -0.716 -0.461 1.147 sum -10.416 -3.200 18.806 21.735 Atomic orbital electron populations 1.81204 1.12848 1.08263 1.08765 1.28946 0.94973 0.93460 0.93263 1.19977 0.81788 1.02318 1.05506 1.21608 0.82121 0.93975 1.04527 1.48142 1.05596 1.59047 1.18706 1.19458 0.90560 0.94524 0.82984 1.21448 1.32110 0.96548 1.07003 0.92131 1.24905 0.95351 0.95719 0.97872 1.69925 1.34501 1.19698 1.28926 0.86457 0.78282 0.82060 0.80748 1.19699 1.20937 1.20841 1.17870 0.87301 0.79425 0.81457 1.90819 1.13960 1.57597 1.77189 1.20090 0.95166 0.95604 0.98861 1.21083 0.99344 0.93650 0.93267 1.20747 0.94172 0.91066 1.00630 1.98377 1.91182 1.27917 1.84256 1.18973 0.90427 0.92519 0.94098 1.18764 0.88735 0.91722 0.97986 1.21798 0.91721 1.01171 0.97245 1.86426 1.31034 1.75926 1.29202 1.22664 1.02752 0.95883 0.80517 1.22480 1.01697 0.97329 1.00973 1.22698 0.98804 0.95978 0.84080 1.86411 1.65334 1.49534 1.21055 0.87384 0.85840 0.88397 0.89741 0.94272 0.93091 0.92640 0.82923 0.82901 0.87610 0.92120 0.89638 0.89014 0.92162 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.50 18.54 42.15 0.78 -5.71 16 2 C 0.21 2.64 15.38 -20.76 -0.32 2.32 16 3 C -0.05 -0.59 5.10 -29.52 -0.15 -0.74 16 4 C 0.10 1.42 4.83 -4.04 -0.02 1.41 16 5 N -0.58 -10.50 2.46 -176.26 -0.43 -10.94 16 6 C 0.24 5.52 5.22 -5.20 -0.03 5.49 16 7 C -0.53 -13.78 9.39 -34.44 -0.32 -14.10 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 11 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.55 10.18 7.26 -12.44 -0.09 10.09 16 16 O -0.52 -11.67 16.54 5.29 0.09 -11.58 16 17 C -0.09 -1.37 5.09 -104.94 -0.53 -1.91 16 18 C -0.05 -0.76 9.46 -39.13 -0.37 -1.13 16 19 C -0.04 -0.50 6.33 -39.45 -0.25 -0.75 16 20 Cl -0.05 -0.56 28.51 -51.86 -1.48 -2.03 16 21 C 0.09 1.09 5.73 -39.07 -0.22 0.86 16 22 C 0.07 0.91 5.72 -39.36 -0.23 0.68 16 23 C -0.10 -1.26 7.34 -39.05 -0.29 -1.55 16 24 O -0.31 -3.67 10.16 -36.81 -0.37 -4.05 16 25 C 0.06 0.45 6.49 36.68 0.24 0.69 16 26 C -0.19 -1.25 5.93 -27.68 -0.16 -1.42 16 27 C 0.06 0.47 6.51 36.68 0.24 0.71 16 28 O -0.31 -3.63 9.63 -36.29 -0.35 -3.98 16 29 H 0.11 0.98 6.18 -51.93 -0.32 0.66 16 30 H 0.12 1.25 8.06 -51.93 -0.42 0.83 16 31 H 0.10 1.39 8.13 -51.93 -0.42 0.97 16 32 H 0.08 1.09 5.03 -51.93 -0.26 0.83 16 33 H 0.04 0.87 7.99 -51.93 -0.42 0.46 16 34 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.15 2.16 8.06 -52.48 -0.42 1.73 16 37 H 0.15 1.70 3.65 -52.49 -0.19 1.51 16 38 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.45 7.93 -51.93 -0.41 0.04 16 43 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -32.45 380.21 -7.82 -40.27 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -4.89 Total: -1.73 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -2.60 Total: 2.27 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 1.08 Total: -40.66 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.64 Total: -19.61 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.03 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.45 -7.82 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.157 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds