Wall clock time and date at job start Tue Mar 31 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47174 * 15.73451 * 3 2 1 5 5 N 1.46508 * 109.46921 * 185.45764 * 4 3 2 6 6 C 1.46492 * 120.00070 * 278.12452 * 5 4 3 7 7 C 1.50705 * 109.47131 * 269.99770 * 6 5 4 8 8 H 1.07999 * 119.99576 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00235 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99941 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99980 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47047 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47026 * 120.00154 * 11 9 7 14 14 H 1.48500 * 109.46883 * 239.99685 * 11 9 7 15 15 C 1.34780 * 119.99688 * 98.11970 * 5 4 3 16 16 O 1.21586 * 119.99630 * 185.89945 * 15 5 4 17 17 C 1.47605 * 120.00117 * 5.90504 * 15 5 4 18 18 C 1.39709 * 120.04488 * 134.32139 * 17 15 5 19 19 C 1.37966 * 120.05539 * 180.02562 * 18 17 15 20 20 Cl 1.73600 * 120.05157 * 180.02562 * 19 18 17 21 21 C 1.38867 * 119.89266 * 359.97438 * 19 18 17 22 22 C 1.38983 * 120.29299 * 0.02562 * 21 19 18 23 23 C 1.38077 * 120.22482 * 359.97438 * 22 21 19 24 24 O 1.36502 * 119.58516 * 179.97438 * 22 21 19 25 25 C 1.42715 * 115.88351 * 68.28947 * 24 22 21 26 26 C 1.52066 * 110.86725 * 275.52757 * 25 24 22 27 27 C 1.52069 * 112.28434 * 64.85312 * 26 25 24 28 28 O 1.36343 * 120.15240 * 179.97438 * 21 19 18 29 29 H 1.09005 * 109.46860 * 255.73280 * 3 2 1 30 30 H 1.09002 * 109.47199 * 135.74051 * 3 2 1 31 31 H 1.08997 * 109.46979 * 65.46289 * 4 3 2 32 32 H 1.08993 * 109.47494 * 305.45610 * 4 3 2 33 33 H 1.09006 * 109.47605 * 29.99596 * 6 5 4 34 34 H 1.09006 * 109.47462 * 149.99903 * 6 5 4 35 35 H 0.96996 * 119.99553 * 180.02562 * 10 9 7 36 36 H 1.08003 * 119.96977 * 359.97438 * 18 17 15 37 37 H 1.07999 * 120.19227 * 179.97438 * 23 22 21 38 38 H 1.08999 * 109.08843 * 155.21541 * 25 24 22 39 39 H 1.09004 * 109.24924 * 35.94140 * 25 24 22 40 40 H 1.08998 * 108.90456 * 304.15921 * 26 25 24 41 41 H 1.09005 * 108.90375 * 185.54184 * 26 25 24 42 42 H 1.09002 * 109.21620 * 55.55288 * 27 26 25 43 43 H 1.09003 * 109.20919 * 174.92183 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.3876 -0.3912 5 7 4.5779 -1.4245 -0.2653 6 6 5.4195 -0.8946 -1.3408 7 6 5.7288 -1.9937 -2.3245 8 1 5.3372 -2.9874 -2.1646 9 6 6.5117 -1.7306 -3.4285 10 7 6.9882 -0.5204 -3.6235 11 14 6.8945 -3.0928 -4.6481 12 1 6.2430 -4.3515 -4.2048 13 1 6.3802 -2.7155 -5.9891 14 1 8.3640 -3.2941 -4.7202 15 6 5.1458 -1.9459 0.8402 16 8 6.3502 -1.8801 0.9936 17 6 4.3058 -2.5970 1.8645 18 6 4.6898 -3.8263 2.4060 19 6 3.9045 -4.4353 3.3631 20 17 4.3820 -5.9625 4.0363 21 6 2.7321 -3.8241 3.7877 22 6 2.3454 -2.6012 3.2524 23 6 3.1249 -1.9842 2.2942 24 8 1.1899 -2.0135 3.6800 25 6 1.1917 -1.5430 5.0273 26 6 0.8447 -2.6650 5.9933 27 6 1.8952 -3.7644 6.0016 28 8 1.9519 -4.4214 4.7329 29 1 2.9712 0.2541 0.9960 30 1 2.9711 0.7368 -0.7172 31 1 2.8375 -1.6008 -1.4224 32 1 2.6782 -2.1358 0.2677 33 1 4.8925 -0.0882 -1.8510 34 1 6.3492 -0.5117 -0.9197 35 1 7.5386 -0.3353 -4.4003 36 1 5.6017 -4.3007 2.0745 37 1 2.8237 -1.0341 1.8783 38 1 0.4572 -0.7439 5.1268 39 1 2.1802 -1.1532 5.2705 40 1 -0.1144 -3.0952 5.7050 41 1 0.7582 -2.2517 6.9983 42 1 2.8691 -3.3284 6.2241 43 1 1.6447 -4.4942 6.7715 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:24 Heat of formation + Delta-G solvation = -64.029663 kcal Electronic energy + Delta-G solvation = -30764.842446 eV Core-core repulsion = 26415.861253 eV Total energy + Delta-G solvation = -4348.981193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 364.102 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26752 -40.99730 -38.80516 -38.51503 -38.11393 -37.38378 -36.79168 -34.88737 -33.94291 -32.49458 -31.74202 -30.72748 -29.12965 -27.63532 -25.50850 -25.42174 -24.32529 -23.36642 -22.65293 -20.72520 -19.51867 -18.95264 -18.72310 -18.41592 -18.18660 -17.57735 -17.20780 -16.68405 -16.56169 -16.37050 -16.20296 -15.91305 -15.54360 -15.19833 -15.10224 -15.03576 -14.64719 -14.32728 -14.25315 -14.04417 -13.81769 -13.64144 -13.61541 -13.22170 -13.12143 -12.99696 -12.72153 -12.58786 -12.44999 -12.35676 -12.17333 -12.16178 -11.97962 -11.80520 -11.64488 -11.42508 -11.17602 -10.81983 -10.56718 -9.89898 -9.80263 -9.55331 -8.16987 -6.28421 -0.53810 -0.23342 0.85118 1.41705 1.44391 1.50041 1.54939 1.71807 1.82499 1.99306 2.19666 2.32323 2.45069 2.60038 3.02370 3.15843 3.44183 3.60827 3.71775 3.76568 3.85557 3.91313 3.97460 3.99400 4.09754 4.22469 4.34909 4.38443 4.40182 4.57656 4.75449 4.75998 4.78540 4.81301 4.89351 4.97834 5.04232 5.10200 5.14652 5.35487 5.56679 5.84374 5.96267 6.12777 6.31244 6.55162 6.59615 6.80029 7.20224 7.43004 8.90126 Molecular weight = 364.10amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.003355 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.944805 B = 8344.958944 C =10213.680046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.239 3.761 3 C -0.045 4.045 4 C 0.102 3.898 5 N -0.583 5.583 6 C 0.257 3.743 7 C -0.543 4.543 8 H 0.054 0.946 9 C 0.016 3.984 10 N -0.922 5.922 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.274 1.274 14 H -0.284 1.284 15 C 0.555 3.445 16 O -0.570 6.570 17 C -0.104 4.104 18 C -0.059 4.059 19 C -0.043 4.043 20 Cl -0.039 7.039 21 C 0.093 3.907 22 C 0.075 3.925 23 C -0.089 4.089 24 O -0.325 6.325 25 C 0.044 3.956 26 C -0.182 4.182 27 C 0.048 3.952 28 O -0.323 6.323 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.144 0.856 37 H 0.168 0.832 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 -2.575 20.895 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.079 4.079 3 C -0.086 4.086 4 C -0.023 4.023 5 N -0.312 5.312 6 C 0.137 3.863 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.183 4.183 10 N -0.562 5.562 11 Si 0.780 3.220 12 H -0.194 1.194 13 H -0.199 1.199 14 H -0.210 1.210 15 C 0.343 3.657 16 O -0.450 6.450 17 C -0.107 4.107 18 C -0.079 4.079 19 C -0.070 4.070 20 Cl -0.009 7.009 21 C 0.047 3.953 22 C 0.031 3.969 23 C -0.108 4.108 24 O -0.242 6.242 25 C -0.029 4.029 26 C -0.219 4.219 27 C -0.025 4.025 28 O -0.240 6.240 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.162 0.838 37 H 0.185 0.815 38 H 0.144 0.856 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.143 0.857 42 H 0.084 0.916 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.004 -2.688 20.789 24.668 hybrid contribution 1.249 -0.681 -0.782 1.624 sum -11.754 -3.370 20.007 23.448 Atomic orbital electron populations 1.81242 1.14045 1.09491 1.10297 1.28958 0.94802 0.92230 0.91916 1.19936 0.80713 1.00655 1.07265 1.21764 0.79442 0.96209 1.04879 1.47981 1.07023 1.58653 1.17575 1.18973 0.90024 0.93911 0.83368 1.21764 1.31838 0.96973 1.07614 0.92806 1.25644 0.95390 0.97660 0.99645 1.70013 1.35276 1.21243 1.29620 0.85555 0.77770 0.79630 0.79000 1.19395 1.19947 1.21034 1.18336 0.87009 0.78548 0.81836 1.90784 1.16344 1.59402 1.78459 1.19632 0.95903 0.96186 0.99005 1.21011 0.99392 0.93730 0.93774 1.20697 0.94377 0.91453 1.00502 1.98376 1.91172 1.27352 1.84050 1.19071 0.89957 0.92194 0.94039 1.18752 0.88821 0.91671 0.97686 1.21797 0.90705 1.01351 0.96904 1.86402 1.30421 1.75924 1.31438 1.23027 1.04074 0.96905 0.78927 1.22464 1.00562 0.96488 1.02386 1.23058 0.99731 0.97091 0.82661 1.86381 1.64949 1.50432 1.22208 0.85000 0.84561 0.88762 0.88561 0.93608 0.96805 0.92505 0.83778 0.81519 0.85577 0.91235 0.90437 0.85698 0.91599 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -13.43 18.54 20.01 0.37 -13.06 16 2 C 0.24 5.46 15.38 89.44 1.38 6.83 16 3 C -0.05 -0.88 5.10 28.79 0.15 -0.74 16 4 C 0.10 2.68 4.83 86.38 0.42 3.10 16 5 N -0.58 -21.08 2.46 -829.81 -2.04 -23.12 16 6 C 0.26 11.97 5.22 85.64 0.45 12.41 16 7 C -0.54 -28.56 9.39 25.60 0.24 -28.32 16 8 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 9 C 0.02 0.88 5.46 84.65 0.46 1.34 16 10 N -0.92 -51.84 13.29 21.45 0.28 -51.56 16 11 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 15 C 0.55 20.80 7.26 86.72 0.63 21.43 16 16 O -0.57 -26.72 16.54 -3.99 -0.07 -26.79 16 17 C -0.10 -3.02 5.09 -20.07 -0.10 -3.12 16 18 C -0.06 -1.68 9.46 22.56 0.21 -1.47 16 19 C -0.04 -1.08 6.33 22.36 0.14 -0.94 16 20 Cl -0.04 -0.89 28.51 -2.72 -0.08 -0.97 16 21 C 0.09 2.22 5.73 22.60 0.13 2.35 16 22 C 0.08 1.74 5.72 22.41 0.13 1.87 16 23 C -0.09 -2.10 7.34 22.61 0.17 -1.94 16 24 O -0.33 -6.90 10.16 -84.57 -0.86 -7.76 16 25 C 0.04 0.57 6.49 71.67 0.47 1.04 16 26 C -0.18 -1.82 5.93 29.98 0.18 -1.65 16 27 C 0.05 0.63 6.51 71.67 0.47 1.09 16 28 O -0.32 -6.97 9.63 -82.72 -0.80 -7.77 16 29 H 0.13 2.03 6.18 -2.38 -0.01 2.02 16 30 H 0.14 2.46 8.06 -2.39 -0.02 2.44 16 31 H 0.09 2.59 8.13 -2.39 -0.02 2.57 16 32 H 0.10 2.35 5.03 -2.39 -0.01 2.34 16 33 H 0.05 2.05 7.99 -2.38 -0.02 2.04 16 34 H 0.01 0.75 7.35 -2.38 -0.02 0.73 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.39 16 36 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.17 3.33 3.65 -2.91 -0.01 3.32 16 38 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 0.79 7.93 -2.39 -0.02 0.77 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.07 0.80 7.93 -2.39 -0.02 0.78 16 43 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -71.62 380.21 5.42 -66.20 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.08 Total: 6.64 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.50 Total: 13.30 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -1.39 Total: -87.74 kcal Atomic # 8 Polarization: -40.60 SS G_CDS: -1.72 Total: -42.32 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -71.62 5.42 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.169 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds