Wall clock time and date at job start Tue Mar 31 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.46722 * 2 1 4 4 C 1.35953 * 117.00051 * 180.02562 * 3 2 1 5 5 C 1.38581 * 120.08063 * 359.97438 * 4 3 2 6 6 C 1.38232 * 120.01189 * 180.02562 * 5 4 3 7 7 C 1.38291 * 120.18311 * 0.02562 * 6 5 4 8 8 C 1.38185 * 120.16586 * 359.67413 * 7 6 5 9 9 C 1.38744 * 119.98343 * 0.62486 * 8 7 6 10 10 N 1.40223 * 120.08833 * 179.67824 * 9 8 7 11 11 N 1.40019 * 126.25970 * 133.00714 * 10 9 8 12 12 N 1.23644 * 109.32002 * 179.97438 * 11 10 9 13 13 N 1.40029 * 109.31527 * 359.97438 * 12 11 10 14 14 C 1.46502 * 126.25773 * 180.02562 * 13 12 11 15 15 N 1.46900 * 109.47037 * 95.36931 * 14 13 12 16 16 C 1.46900 * 110.99778 * 162.43221 * 15 14 13 17 17 C 1.53006 * 109.47254 * 287.79406 * 16 15 14 18 18 C 1.46896 * 110.99945 * 286.38349 * 15 14 13 19 19 C 1.50697 * 109.47549 * 170.00055 * 18 15 14 20 20 H 1.08002 * 119.99517 * 0.02562 * 19 18 15 21 21 C 1.37871 * 120.00470 * 179.97438 * 19 18 15 22 22 N 1.31513 * 119.99662 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00114 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47291 * 60.00184 * 23 21 19 25 25 H 1.48503 * 109.47498 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47541 * 300.00288 * 23 21 19 27 27 C 1.35050 * 126.25798 * 313.30935 * 10 9 8 28 28 S 1.71200 * 126.80003 * 0.02562 * 27 10 9 29 29 H 1.09008 * 109.47338 * 59.99845 * 1 2 3 30 30 H 1.09002 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47042 * 299.99837 * 1 2 3 32 32 H 1.09002 * 109.47400 * 240.00499 * 2 1 3 33 33 H 1.08997 * 109.47080 * 119.99736 * 2 1 3 34 34 H 1.08000 * 119.99107 * 0.02602 * 5 4 3 35 35 H 1.08000 * 119.90784 * 179.97438 * 6 5 4 36 36 H 1.07991 * 119.91857 * 179.97438 * 7 6 5 37 37 H 1.08001 * 120.00713 * 180.29965 * 8 7 6 38 38 H 1.09000 * 109.47198 * 335.36381 * 14 13 12 39 39 H 1.09005 * 109.46860 * 215.36523 * 14 13 12 40 40 H 1.09000 * 109.47348 * 47.79709 * 16 15 14 41 41 H 1.09005 * 109.47040 * 167.79722 * 16 15 14 42 42 H 1.08998 * 109.46861 * 187.06678 * 17 16 15 43 43 H 1.09001 * 109.46729 * 307.07065 * 17 16 15 44 44 H 1.08996 * 109.46641 * 67.06394 * 17 16 15 45 45 H 1.09003 * 109.47029 * 290.00267 * 18 15 14 46 46 H 1.09006 * 109.46887 * 49.99883 * 18 15 14 47 47 H 0.97003 * 119.99554 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3540 1.5256 -0.0005 5 6 4.1998 0.4279 -0.0005 6 6 5.5700 0.6107 -0.0005 7 6 6.1010 1.8876 0.0000 8 6 5.2646 2.9875 -0.0063 9 6 3.8883 2.8120 0.0000 10 7 3.0375 3.9266 0.0004 11 7 1.9194 4.1153 -0.8210 12 7 1.3978 5.2051 -0.5581 13 7 2.1249 5.8327 0.4609 14 6 1.8315 7.1385 1.0567 15 7 1.0384 6.9520 2.2790 16 6 1.0743 8.1567 3.1188 17 6 2.4567 8.2897 3.7611 18 6 -0.3446 6.5758 1.9570 19 6 -1.0574 6.1561 3.2166 20 1 -0.5354 6.1680 4.1620 21 6 -2.3763 5.7579 3.1624 22 7 -3.0121 5.7439 2.0112 23 14 -3.2600 5.2382 4.7239 24 1 -3.2656 6.3672 5.6886 25 1 -4.6581 4.8579 4.3983 26 1 -2.5588 4.0760 5.3262 27 6 3.1499 5.0170 0.7893 28 16 4.3509 5.3056 1.9748 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7884 -0.5707 -0.0005 35 1 6.2276 -0.2460 -0.0001 36 1 7.1721 2.0255 0.0004 37 1 5.6821 3.9836 -0.0108 38 1 1.2677 7.7435 0.3465 39 1 2.7655 7.6436 1.3032 40 1 0.8732 9.0342 2.5043 41 1 0.3172 8.0784 3.8991 42 1 2.4460 9.1092 4.4797 43 1 2.7105 7.3612 4.2725 44 1 3.1980 8.4934 2.9885 45 1 -0.8596 7.4289 1.5151 46 1 -0.3402 5.7473 1.2486 47 1 -3.9399 5.4634 1.9730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058283564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:03 Heat of formation + Delta-G solvation = 139.190048 kcal Electronic energy + Delta-G solvation = -31072.568132 eV Core-core repulsion = 27000.287421 eV Total energy + Delta-G solvation = -4072.280711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 363.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.00225 -40.43216 -37.92982 -37.44631 -35.14738 -34.21912 -32.67197 -32.03529 -30.65764 -30.07637 -29.48145 -27.73871 -25.52347 -24.74573 -24.31331 -23.44837 -22.47588 -22.11386 -21.76310 -20.38507 -19.13507 -18.01510 -17.22033 -17.08921 -16.61672 -16.45354 -16.25764 -15.81430 -15.23010 -14.80268 -14.58558 -14.48220 -14.03802 -13.83610 -13.73925 -13.45959 -13.11791 -13.09609 -12.71580 -12.54746 -12.34568 -12.19918 -12.13831 -11.97957 -11.85090 -11.81410 -11.42611 -11.34506 -11.21224 -11.06609 -10.95060 -10.93086 -10.74320 -10.58404 -10.21071 -9.91384 -9.33223 -9.18814 -8.51958 -8.47485 -7.69512 -7.56820 -7.33902 -6.09612 -4.11730 0.55290 0.90140 1.13591 1.22173 1.35871 2.31256 2.55767 2.91748 3.29601 3.33374 3.34794 3.37183 4.06335 4.34262 4.47849 4.54241 4.63962 4.73043 4.76380 4.84774 4.92090 5.04528 5.09511 5.17834 5.25973 5.31939 5.35321 5.46244 5.58116 5.67682 5.71293 5.82206 5.87255 5.92676 6.04595 6.05691 6.08716 6.17794 6.25868 6.33697 6.50161 6.64763 6.84139 7.08733 7.14881 7.15142 7.59374 7.64909 7.88268 7.99800 8.34370 8.94598 9.52528 11.00911 Molecular weight = 363.15amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.003899 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3176.129719 B = 7180.271816 C = 9203.021022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.056 3.944 3 O -0.301 6.301 4 C 0.156 3.844 5 C -0.205 4.205 6 C -0.063 4.063 7 C -0.146 4.146 8 C -0.040 4.040 9 C 0.107 3.893 10 N -0.357 5.357 11 N 0.026 4.974 12 N 0.032 4.968 13 N -0.383 5.383 14 C 0.299 3.701 15 N -0.542 5.542 16 C 0.068 3.932 17 C -0.147 4.147 18 C 0.190 3.810 19 C -0.511 4.511 20 H 0.065 0.935 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.471 3.529 28 S -0.518 6.518 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.121 0.879 40 H 0.025 0.975 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.069 0.931 44 H 0.047 0.953 45 H -0.003 1.003 46 H 0.031 0.969 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.152 -8.764 -7.792 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.019 4.019 3 O -0.213 6.213 4 C 0.107 3.893 5 C -0.225 4.225 6 C -0.082 4.082 7 C -0.165 4.165 8 C -0.062 4.062 9 C 0.015 3.985 10 N -0.154 5.154 11 N 0.033 4.967 12 N 0.038 4.962 13 N -0.187 5.187 14 C 0.089 3.911 15 N -0.268 5.268 16 C -0.060 4.060 17 C -0.204 4.204 18 C 0.065 3.935 19 C -0.549 4.549 20 H 0.083 0.917 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.726 3.274 24 H -0.201 1.201 25 H -0.213 1.213 26 H -0.202 1.202 27 C 0.113 3.887 28 S -0.392 6.392 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.015 0.985 46 H 0.049 0.951 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.715 -8.953 -7.755 18.890 hybrid contribution -1.351 -0.072 0.259 1.377 sum 13.364 -9.024 -7.496 17.783 Atomic orbital electron populations 1.21789 0.92191 1.02807 1.04400 1.22881 0.96487 0.81212 1.01272 1.86264 1.17602 1.30011 1.87431 1.18808 0.83667 0.91992 0.94809 1.21119 0.94129 0.97546 1.09678 1.21111 0.94165 0.97657 0.95238 1.20913 1.00126 0.91312 1.04180 1.21093 0.89344 1.01400 0.94324 1.16499 0.87961 0.80291 1.13715 1.47164 1.22768 1.16049 1.29408 1.79987 0.95648 1.10023 1.11058 1.79843 1.13676 1.00605 1.02106 1.50943 1.19361 1.19575 1.28795 1.22418 1.01385 0.75158 0.92142 1.61844 1.16278 1.34728 1.13978 1.21928 0.98615 0.88620 0.96809 1.21838 0.96367 1.01969 1.00255 1.19869 0.80530 0.95471 0.97636 1.21040 0.95543 1.44516 0.93842 0.91695 1.24964 0.97416 0.95604 0.96351 1.69953 1.11250 1.47766 1.24395 0.86557 0.78424 0.79232 0.83226 1.20066 1.21291 1.20207 1.24494 0.91258 0.83485 0.89491 1.93127 1.31047 1.85292 1.29702 0.91184 0.90260 0.91071 0.91793 0.91799 0.84411 0.84933 0.84493 0.83491 0.90452 0.86139 0.95645 0.88644 0.93148 0.91239 0.93395 0.98473 0.95128 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.29 16 2 C 0.06 0.60 5.46 37.16 0.20 0.80 16 3 O -0.30 -4.51 9.31 -19.59 -0.18 -4.70 16 4 C 0.16 2.16 6.69 -39.06 -0.26 1.90 16 5 C -0.21 -2.07 9.04 -39.46 -0.36 -2.42 16 6 C -0.06 -0.53 10.04 -39.56 -0.40 -0.93 16 7 C -0.15 -1.37 10.04 -39.58 -0.40 -1.76 16 8 C -0.04 -0.50 8.80 -39.41 -0.35 -0.85 16 9 C 0.11 1.61 6.13 -83.44 -0.51 1.10 16 10 N -0.36 -6.31 3.54 -11.13 -0.04 -6.35 16 11 N 0.03 0.47 12.84 60.35 0.77 1.25 16 12 N 0.03 0.61 12.85 60.35 0.78 1.39 16 13 N -0.38 -7.26 3.48 -64.90 -0.23 -7.48 16 14 C 0.30 5.32 5.76 -63.31 -0.36 4.95 16 15 N -0.54 -11.40 4.56 -239.97 -1.10 -12.50 16 16 C 0.07 1.24 5.53 -3.82 -0.02 1.22 16 17 C -0.15 -2.30 9.86 37.16 0.37 -1.94 16 18 C 0.19 4.84 4.61 -4.98 -0.02 4.81 16 19 C -0.51 -14.27 8.28 -34.44 -0.29 -14.55 16 20 H 0.06 1.81 7.26 -52.49 -0.38 1.43 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 23 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.47 8.86 7.82 -86.42 -0.68 8.19 16 28 S -0.52 -9.89 28.54 -107.50 -3.07 -12.96 16 29 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 33 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.15 1.85 7.21 -52.49 -0.38 1.47 16 38 H 0.08 1.27 8.03 -51.93 -0.42 0.85 16 39 H 0.12 1.90 6.14 -51.93 -0.32 1.58 16 40 H 0.03 0.42 8.05 -51.93 -0.42 0.00 16 41 H 0.10 1.94 6.59 -51.93 -0.34 1.60 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.70 6.79 -51.93 -0.35 0.35 16 45 H 0.00 -0.07 8.12 -51.93 -0.42 -0.49 16 46 H 0.03 0.86 7.08 -51.93 -0.37 0.49 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 405.07 15.07 6.10 6.10 Total: -1.00 -33.37 405.07 -10.65 -44.01 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.62 Total: -0.63 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.79 Total: 0.78 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.93 Total: -49.35 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.18 Total: -4.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -9.89 SS G_CDS: -3.07 Total: -12.96 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.37 -10.65 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058283564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.203 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds