Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46986 * 179.97438 * 20 18 10 22 22 N 1.46500 * 109.47306 * 179.97438 * 21 20 18 23 23 C 1.36833 * 125.06454 * 264.70014 * 22 21 20 24 24 C 1.34240 * 109.92756 * 179.81099 * 23 22 21 25 25 C 1.46481 * 106.99951 * 0.43272 * 24 23 22 26 26 C 1.39634 * 134.03216 * 179.75637 * 25 24 23 27 27 C 1.36624 * 119.76467 * 179.97438 * 26 25 24 28 28 C 1.38835 * 120.52827 * 0.02562 * 27 26 25 29 29 C 1.37744 * 120.66578 * 359.97438 * 28 27 26 30 30 C 1.37693 * 125.06204 * 84.99623 * 22 21 20 31 31 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 33 33 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 34 34 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 35 35 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 36 36 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 37 37 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 38 38 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 40 40 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 41 41 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 42 42 H 1.08999 * 109.47464 * 299.99792 * 21 20 18 43 43 H 1.09001 * 109.47410 * 60.00166 * 21 20 18 44 44 H 1.07997 * 125.03557 * 359.97438 * 23 22 21 45 45 H 1.07997 * 126.49699 * 180.14919 * 24 23 22 46 46 H 1.07997 * 120.11929 * 0.02562 * 26 25 24 47 47 H 1.08000 * 119.73936 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.66497 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.10949 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 2.7973 -4.3045 -3.6385 22 7 2.3204 -3.7475 -4.9068 23 6 1.2759 -4.2422 -5.6393 24 6 1.0982 -3.4987 -6.7428 25 6 2.1183 -2.4477 -6.7198 26 6 2.4442 -1.3926 -7.5745 27 6 3.4834 -0.5626 -7.2617 28 6 4.2188 -0.7600 -6.1008 29 6 3.9145 -1.7944 -5.2437 30 6 2.8600 -2.6516 -5.5421 31 1 -0.4849 0.8401 0.0004 32 1 0.6247 -2.5563 -0.8919 33 1 0.6241 -2.5575 0.8881 34 1 2.6869 -3.3895 2.0258 35 1 3.6886 -4.5604 1.1348 36 1 0.4412 -4.0092 2.8172 37 1 -1.0179 -5.9028 3.4992 38 1 -0.4700 -8.1797 2.7366 39 1 2.8620 -6.8029 0.6805 40 1 1.0671 -3.6528 -2.5325 41 1 2.4196 -2.4955 -2.5320 42 1 3.8809 -4.2017 -3.5809 43 1 2.5289 -5.3595 -3.5817 44 1 0.6809 -5.1018 -5.3685 45 1 0.3485 -3.6498 -7.5053 46 1 1.8763 -1.2328 -8.4791 47 1 3.7348 0.2535 -7.9229 48 1 5.0377 -0.0956 -5.8674 49 1 4.4923 -1.9394 -4.3428 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058290762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = 58.239247 kcal Electronic energy + Delta-G solvation = -31875.380960 eV Core-core repulsion = 27767.686351 eV Total energy + Delta-G solvation = -4107.694609 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.16134 -40.14582 -39.08786 -36.93272 -35.45347 -33.68495 -33.03207 -32.19253 -31.51068 -30.79475 -29.00692 -28.49809 -27.60939 -26.14027 -23.96298 -23.45047 -22.88053 -22.42204 -21.76802 -21.27327 -19.94611 -18.53553 -17.23860 -17.04031 -16.65263 -16.35173 -16.20281 -15.82430 -15.59071 -15.28070 -15.25435 -14.78599 -14.64324 -14.34765 -13.84960 -13.70136 -13.56252 -13.34510 -12.98033 -12.87460 -12.76976 -12.55516 -12.44258 -12.30529 -12.19073 -11.91973 -11.52322 -11.50625 -11.41255 -11.12093 -11.03891 -10.92968 -10.79788 -10.66261 -10.30215 -9.96532 -9.66476 -9.52704 -9.37079 -9.28091 -8.82709 -8.65009 -8.00373 -7.96020 -7.48087 -6.29509 -4.38177 1.23702 1.31219 1.45385 1.81684 2.84629 2.96627 3.14569 3.17995 3.23914 3.26833 3.70954 4.09910 4.13688 4.25410 4.60481 4.82403 4.86582 4.96761 4.96848 5.04666 5.09750 5.12873 5.15128 5.17991 5.24415 5.27523 5.33378 5.54696 5.57311 5.61166 5.67996 5.79270 5.84136 5.95581 5.99046 6.00628 6.07930 6.08602 6.23535 6.25836 6.27700 6.49104 6.56493 6.63942 6.77328 6.87673 6.93486 6.98087 7.01530 7.30427 7.41485 7.47801 7.63725 7.90894 8.09064 8.12436 8.62375 8.78034 9.30913 10.77229 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.003378 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.099382 B = 8287.921926 C =10814.864795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.239 3.761 10 N -0.587 5.587 11 C 0.161 3.839 12 C -0.146 4.146 13 C -0.059 4.059 14 C -0.178 4.178 15 C 0.089 3.911 16 N -0.492 5.492 17 C 0.116 3.884 18 C 0.524 3.476 19 O -0.574 6.574 20 C -0.152 4.152 21 C 0.127 3.873 22 N -0.479 5.479 23 C 0.056 3.944 24 C -0.212 4.212 25 C -0.111 4.111 26 C -0.076 4.076 27 C -0.150 4.150 28 C -0.104 4.104 29 C -0.121 4.121 30 C 0.101 3.899 31 H 0.267 0.733 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.166 0.834 45 H 0.143 0.857 46 H 0.117 0.883 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -7.006 -5.182 8.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.079 0.921 9 C 0.119 3.881 10 N -0.317 5.317 11 C 0.037 3.963 12 C -0.149 4.149 13 C -0.085 4.085 14 C -0.198 4.198 15 C -0.068 4.068 16 N -0.201 5.201 17 C -0.041 4.041 18 C 0.312 3.688 19 O -0.456 6.456 20 C -0.192 4.192 21 C 0.006 3.994 22 N -0.161 5.161 23 C -0.069 4.069 24 C -0.237 4.237 25 C -0.116 4.116 26 C -0.095 4.095 27 C -0.169 4.169 28 C -0.124 4.124 29 C -0.141 4.141 30 C -0.005 4.005 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.112 0.888 44 H 0.183 0.817 45 H 0.161 0.839 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.893 -8.341 -5.131 9.974 hybrid contribution -0.140 2.061 0.522 2.131 sum 1.753 -6.280 -4.610 7.985 Atomic orbital electron populations 1.69900 1.06041 1.27626 1.49039 1.24922 0.94839 0.99319 0.94432 0.86585 0.79659 0.82561 0.78934 1.19877 1.21050 1.20079 1.21395 0.93544 0.90311 1.52957 0.92055 1.19470 0.87424 0.82469 0.98726 1.48241 1.45354 1.34366 1.03699 1.20142 0.95974 0.93274 0.86957 1.21430 0.98063 0.96853 0.98585 1.21647 0.92646 0.99813 0.94410 1.22111 1.01194 0.94056 1.02447 1.22712 0.94042 0.96088 0.93982 1.67717 1.04706 1.36156 1.11473 1.22845 0.97641 0.88037 0.95599 1.20206 0.80714 0.82194 0.85644 1.90597 1.36448 1.30535 1.88035 1.21958 1.02493 1.03154 0.91592 1.21531 1.00147 0.97939 0.79816 1.44102 1.27824 1.24787 1.19370 1.21821 0.91835 1.00332 0.92925 1.21594 1.02943 0.98450 1.00743 1.19216 0.98263 0.98272 0.95804 1.20197 0.97099 0.93748 0.98417 1.20571 0.97564 1.00614 0.98169 1.20771 0.99969 0.97170 0.94446 1.20107 0.97294 0.95824 1.00878 1.18269 0.97487 0.90868 0.93855 0.92322 0.94459 0.94631 0.89116 0.89588 0.84520 0.85050 0.83262 0.82421 0.88747 0.87114 0.89081 0.88812 0.81721 0.83893 0.86469 0.86440 0.86034 0.86245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 13.29 55.43 0.74 -22.91 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.28 9.28 -34.44 -0.32 -13.60 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.24 5.24 4.97 -5.19 -0.03 5.22 16 10 N -0.59 -11.16 2.44 -176.43 -0.43 -11.60 16 11 C 0.16 2.68 5.56 -5.19 -0.03 2.65 16 12 C -0.15 -2.30 5.48 -104.48 -0.57 -2.87 16 13 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 14 C -0.18 -2.26 10.11 -39.44 -0.40 -2.66 16 15 C 0.09 1.17 11.18 -17.54 -0.20 0.97 16 16 N -0.49 -7.71 10.36 -13.25 -0.14 -7.85 16 17 C 0.12 1.85 10.86 -17.55 -0.19 1.66 16 18 C 0.52 9.72 7.67 -10.99 -0.08 9.63 16 19 O -0.57 -11.06 15.12 5.55 0.08 -10.97 16 20 C -0.15 -2.57 4.58 -27.89 -0.13 -2.70 16 21 C 0.13 1.87 5.29 -4.04 -0.02 1.85 16 22 N -0.48 -7.15 2.78 -114.43 -0.32 -7.46 16 23 C 0.06 0.75 11.27 -16.73 -0.19 0.56 16 24 C -0.21 -2.85 11.08 -37.67 -0.42 -3.27 16 25 C -0.11 -1.69 6.37 -105.14 -0.67 -2.36 16 26 C -0.08 -1.03 10.05 -39.64 -0.40 -1.43 16 27 C -0.15 -1.94 9.97 -39.94 -0.40 -2.34 16 28 C -0.10 -1.43 10.01 -39.54 -0.40 -1.83 16 29 C -0.12 -1.85 10.00 -39.43 -0.39 -2.24 16 30 C 0.10 1.62 6.81 -83.99 -0.57 1.05 16 31 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.04 0.87 6.44 -51.93 -0.33 0.54 16 33 H 0.04 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 35 H 0.09 1.41 7.37 -51.93 -0.38 1.02 16 36 H 0.14 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 39 H 0.16 2.55 7.62 -52.49 -0.40 2.15 16 40 H 0.09 1.61 7.40 -51.93 -0.38 1.23 16 41 H 0.11 2.11 8.00 -51.93 -0.42 1.70 16 42 H 0.09 1.35 8.10 -51.93 -0.42 0.93 16 43 H 0.09 1.27 8.07 -51.93 -0.42 0.86 16 44 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 46 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 48 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 49 H 0.12 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 418.46 15.07 6.31 6.31 Total: -1.00 -29.28 418.46 -11.61 -40.89 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -6.94 Total: 9.91 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -5.89 Total: -11.28 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.15 Total: -49.82 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -29.28 -11.61 -40.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.132 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds