Wall clock time and date at job start Tue Mar 31 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99830 * 2 1 4 4 H 1.48504 * 109.47353 * 240.00348 * 3 2 1 5 5 H 1.48496 * 109.47191 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46911 * 120.00531 * 3 2 1 7 7 C 1.37872 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00460 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99899 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47198 * 179.97438 * 9 7 2 11 11 C 1.46503 * 120.00032 * 89.99783 * 10 9 7 12 12 C 1.50695 * 109.47313 * 90.00128 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25293 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.34778 * 119.99626 * 269.99560 * 10 9 7 19 19 O 1.21284 * 119.99808 * 179.97438 * 18 10 9 20 20 C 1.50699 * 120.00222 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46986 * 179.97438 * 20 18 10 22 22 N 1.46500 * 109.47306 * 179.97438 * 21 20 18 23 23 C 1.36833 * 125.06454 * 264.70014 * 22 21 20 24 24 C 1.34240 * 109.92756 * 179.81099 * 23 22 21 25 25 C 1.46481 * 106.99951 * 0.43272 * 24 23 22 26 26 C 1.39634 * 134.03216 * 179.75637 * 25 24 23 27 27 C 1.36624 * 119.76467 * 179.97438 * 26 25 24 28 28 C 1.38835 * 120.52827 * 0.02562 * 27 26 25 29 29 C 1.37744 * 120.66578 * 359.97438 * 28 27 26 30 30 C 1.37693 * 125.06204 * 84.99623 * 22 21 20 31 31 H 0.96998 * 119.99672 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.47781 * 59.99756 * 9 7 2 33 33 H 1.09006 * 109.47155 * 299.99609 * 9 7 2 34 34 H 1.09001 * 109.46632 * 329.99937 * 11 10 9 35 35 H 1.08996 * 109.46728 * 209.99930 * 11 10 9 36 36 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 37 37 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 38 38 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 39 39 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 40 40 H 1.08999 * 109.46849 * 299.99992 * 20 18 10 41 41 H 1.09002 * 109.47000 * 60.00232 * 20 18 10 42 42 H 1.08999 * 109.47464 * 299.99792 * 21 20 18 43 43 H 1.09001 * 109.47410 * 60.00166 * 21 20 18 44 44 H 1.07997 * 125.03557 * 359.97438 * 23 22 21 45 45 H 1.07997 * 126.49699 * 180.14919 * 24 23 22 46 46 H 1.07997 * 120.11929 * 0.02562 * 26 25 24 47 47 H 1.08000 * 119.73936 * 180.02562 * 27 26 25 48 48 H 1.08004 * 119.66497 * 179.97438 * 28 27 26 49 49 H 1.08004 * 120.10949 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.6792 -4.1705 1.2656 12 6 1.7626 -5.2851 1.6997 13 6 0.6595 -5.0170 2.4963 14 6 -0.1530 -6.0742 2.8756 15 6 0.1581 -7.3506 2.4459 16 7 1.2124 -7.5677 1.6843 17 6 2.0073 -6.5863 1.3043 18 6 2.6409 -4.1238 -1.1704 19 8 3.4294 -5.0454 -1.1713 20 6 2.1507 -3.5503 -2.4750 21 6 2.7973 -4.3045 -3.6385 22 7 2.3204 -3.7475 -4.9068 23 6 1.2759 -4.2422 -5.6393 24 6 1.0982 -3.4987 -6.7428 25 6 2.1183 -2.4477 -6.7198 26 6 2.4442 -1.3926 -7.5745 27 6 3.4834 -0.5626 -7.2617 28 6 4.2188 -0.7600 -6.1008 29 6 3.9145 -1.7944 -5.2437 30 6 2.8600 -2.6516 -5.5421 31 1 -0.4849 0.8401 0.0004 32 1 0.6247 -2.5563 -0.8919 33 1 0.6241 -2.5575 0.8881 34 1 2.6869 -3.3895 2.0258 35 1 3.6886 -4.5604 1.1348 36 1 0.4412 -4.0092 2.8172 37 1 -1.0179 -5.9028 3.4992 38 1 -0.4700 -8.1797 2.7366 39 1 2.8620 -6.8029 0.6805 40 1 1.0671 -3.6528 -2.5325 41 1 2.4196 -2.4955 -2.5320 42 1 3.8809 -4.2017 -3.5809 43 1 2.5289 -5.3595 -3.5817 44 1 0.6809 -5.1018 -5.3685 45 1 0.3485 -3.6498 -7.5053 46 1 1.8763 -1.2328 -8.4791 47 1 3.7348 0.2535 -7.9229 48 1 5.0377 -0.0956 -5.8674 49 1 4.4923 -1.9394 -4.3428 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058290762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:07 Heat of formation + Delta-G solvation = 46.493764 kcal Electronic energy + Delta-G solvation = -31875.890283 eV Core-core repulsion = 27767.686351 eV Total energy + Delta-G solvation = -4108.203931 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.24907 -41.39638 -40.47561 -38.00316 -37.00353 -35.06328 -34.61533 -33.54882 -32.70043 -31.93611 -30.14565 -29.59322 -29.34936 -27.48943 -25.36297 -24.78947 -24.34308 -23.49575 -22.95064 -22.35412 -21.03510 -20.05620 -18.74692 -18.50666 -17.94296 -17.53018 -17.34647 -17.29140 -16.93832 -16.68865 -16.32779 -16.24523 -15.97562 -15.66134 -15.02611 -14.87912 -14.69850 -14.53996 -14.31568 -14.23491 -14.00523 -13.95989 -13.63417 -13.60697 -13.44167 -13.40953 -13.15137 -12.88689 -12.64104 -12.54369 -12.49572 -12.26515 -12.23893 -12.06604 -11.78929 -11.71870 -11.02368 -10.74360 -10.62531 -10.56057 -10.46501 -9.98099 -9.56167 -9.09229 -8.55488 -8.24734 -6.38743 0.10819 0.24323 0.31632 0.72907 1.39209 1.41318 1.47273 1.62700 1.74803 1.88448 2.28543 2.42452 2.93471 3.02411 3.06932 3.51617 3.61474 3.68839 3.82023 3.82660 3.88131 3.94114 4.00883 4.09150 4.09416 4.15949 4.28918 4.31113 4.44397 4.49259 4.59810 4.66353 4.67758 4.72635 4.78125 4.83017 4.86085 4.88986 4.97901 5.08411 5.12664 5.19371 5.21271 5.34629 5.58349 5.58811 5.71439 5.73257 5.77290 5.88677 5.94478 6.00194 6.34368 6.40576 6.45785 6.74396 6.99524 7.18424 7.34919 8.80604 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.007731 B = 0.003378 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3621.099382 B = 8287.921926 C =10814.864795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.257 3.743 10 N -0.590 5.590 11 C 0.162 3.838 12 C -0.157 4.157 13 C -0.069 4.069 14 C -0.168 4.168 15 C 0.089 3.911 16 N -0.511 5.511 17 C 0.105 3.895 18 C 0.522 3.478 19 O -0.580 6.580 20 C -0.139 4.139 21 C 0.140 3.860 22 N -0.487 5.487 23 C 0.048 3.952 24 C -0.217 4.217 25 C -0.135 4.135 26 C -0.082 4.082 27 C -0.153 4.153 28 C -0.109 4.109 29 C -0.147 4.147 30 C 0.072 3.928 31 H 0.267 0.733 32 H 0.022 0.978 33 H 0.026 0.974 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.148 0.852 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.194 0.806 45 H 0.169 0.831 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.141 0.859 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 -7.256 -5.485 9.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.137 3.863 10 N -0.319 5.319 11 C 0.039 3.961 12 C -0.160 4.160 13 C -0.096 4.096 14 C -0.187 4.187 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.052 4.052 18 C 0.311 3.689 19 O -0.462 6.462 20 C -0.179 4.179 21 C 0.017 3.983 22 N -0.170 5.170 23 C -0.077 4.077 24 C -0.241 4.241 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.172 4.172 28 C -0.128 4.128 29 C -0.168 4.168 30 C -0.034 4.034 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.183 0.817 38 H 0.203 0.797 39 H 0.166 0.834 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.126 0.874 44 H 0.211 0.789 45 H 0.186 0.814 46 H 0.160 0.840 47 H 0.165 0.835 48 H 0.159 0.841 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.118 -8.604 -5.437 10.239 hybrid contribution 0.086 2.102 0.630 2.196 sum 1.204 -6.501 -4.806 8.174 Atomic orbital electron populations 1.69985 1.07128 1.28203 1.50241 1.25561 0.95470 1.02045 0.94329 0.85753 0.78598 0.79370 0.78924 1.19974 1.20820 1.19382 1.21607 0.93314 0.91469 1.52095 0.92760 1.19051 0.87330 0.82585 0.97375 1.48194 1.45015 1.33858 1.04847 1.20184 0.96335 0.93684 0.85944 1.21268 0.98689 0.96273 0.99752 1.21809 0.92668 1.00675 0.94424 1.22469 1.01410 0.93156 1.01696 1.23344 0.93318 0.97508 0.92607 1.67729 1.05660 1.36170 1.12452 1.22704 0.97945 0.88319 0.96186 1.20428 0.80495 0.82048 0.85946 1.90589 1.36659 1.30807 1.88158 1.21821 1.02380 1.01834 0.91914 1.21370 0.99554 0.98136 0.79191 1.44173 1.28493 1.24934 1.19352 1.22386 0.91454 1.01114 0.92704 1.21969 1.02992 0.97768 1.01389 1.19672 0.98896 0.99382 0.95984 1.20586 0.97355 0.93130 0.98988 1.20954 0.96965 1.01140 0.98108 1.21119 1.00484 0.96781 0.94454 1.20285 0.97956 0.97019 1.01496 1.18607 0.98287 0.91628 0.94835 0.92358 0.95978 0.95575 0.89108 0.89587 0.84393 0.81653 0.79724 0.83434 0.88999 0.89571 0.89653 0.87418 0.78876 0.81391 0.83969 0.83498 0.84109 0.86875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.24 13.29 21.45 0.28 -48.95 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.95 41.05 29.54 68.60 2.03 43.08 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.55 -27.15 9.28 25.60 0.24 -26.92 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.26 11.59 4.97 85.63 0.43 12.02 16 10 N -0.59 -22.99 2.44 -830.48 -2.03 -25.02 16 11 C 0.16 5.52 5.56 85.63 0.48 6.00 16 12 C -0.16 -4.94 5.48 -19.77 -0.11 -5.05 16 13 C -0.07 -1.95 9.86 22.47 0.22 -1.73 16 14 C -0.17 -3.84 10.11 22.36 0.23 -3.62 16 15 C 0.09 2.13 11.18 84.69 0.95 3.08 16 16 N -0.51 -15.47 10.36 -195.83 -2.03 -17.50 16 17 C 0.11 3.36 10.86 84.67 0.92 4.28 16 18 C 0.52 19.86 7.67 87.66 0.67 20.53 16 19 O -0.58 -22.71 15.12 -3.04 -0.05 -22.75 16 20 C -0.14 -4.88 4.58 29.85 0.14 -4.74 16 21 C 0.14 4.18 5.29 86.38 0.46 4.64 16 22 N -0.49 -14.68 2.78 -515.93 -1.43 -16.11 16 23 C 0.05 1.23 11.27 83.00 0.94 2.16 16 24 C -0.22 -5.58 11.08 23.51 0.26 -5.32 16 25 C -0.13 -4.04 6.37 -20.20 -0.13 -4.17 16 26 C -0.08 -2.12 10.05 22.23 0.22 -1.90 16 27 C -0.15 -3.73 9.97 22.03 0.22 -3.51 16 28 C -0.11 -2.96 10.01 22.30 0.22 -2.73 16 29 C -0.15 -4.65 10.00 22.37 0.22 -4.42 16 30 C 0.07 2.36 6.81 39.03 0.27 2.63 16 31 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 32 H 0.02 1.07 6.44 -2.39 -0.02 1.05 16 33 H 0.03 1.23 8.07 -2.38 -0.02 1.21 16 34 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 35 H 0.09 2.90 7.37 -2.39 -0.02 2.88 16 36 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 39 H 0.15 4.90 7.62 -2.91 -0.02 4.88 16 40 H 0.09 3.25 7.40 -2.39 -0.02 3.23 16 41 H 0.09 3.47 8.00 -2.39 -0.02 3.45 16 42 H 0.09 2.63 8.10 -2.39 -0.02 2.61 16 43 H 0.11 2.90 8.07 -2.39 -0.02 2.88 16 44 H 0.19 3.58 8.06 -2.91 -0.02 3.55 16 45 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 46 H 0.14 2.82 8.06 -2.91 -0.02 2.80 16 47 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 48 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 49 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -63.21 418.46 5.02 -58.19 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.95 Total: 35.98 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 7.30 Total: -6.92 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -5.20 Total: -107.58 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.75 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -63.21 5.02 -58.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.685 kcal (2) G-P(sol) polarization free energy of solvation -63.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds