Wall clock time and date at job start Tue Mar 31 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34246 * 125.03294 * 2 1 4 4 C 1.46491 * 106.99217 * 180.26694 * 3 2 1 5 5 C 1.39633 * 134.02679 * 179.75809 * 4 3 2 6 6 C 1.36621 * 119.76273 * 179.97438 * 5 4 3 7 7 C 1.38835 * 120.52869 * 0.02562 * 6 5 4 8 8 C 1.37746 * 120.66441 * 359.97438 * 7 6 5 9 9 C 1.39120 * 119.78239 * 0.02562 * 8 7 6 10 10 N 1.36822 * 125.03712 * 179.80669 * 2 1 3 11 11 C 1.46504 * 125.06247 * 359.97438 * 10 2 1 12 12 C 1.50699 * 109.46973 * 269.69460 * 11 10 2 13 13 O 1.21284 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00222 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99626 * 359.97438 * 14 12 11 16 16 C 1.50699 * 109.47198 * 269.99560 * 15 14 12 17 17 H 1.08001 * 119.99641 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99899 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00183 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47353 * 59.99931 * 20 18 16 22 22 H 1.48496 * 109.47191 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46911 * 300.00114 * 20 18 16 24 24 C 1.46503 * 120.00342 * 179.97438 * 14 12 11 25 25 C 1.50695 * 109.47313 * 270.00350 * 24 14 12 26 26 C 1.38678 * 120.41675 * 270.25293 * 25 24 14 27 27 C 1.38627 * 118.41930 * 180.24221 * 26 25 24 28 28 C 1.38232 * 119.16085 * 359.75178 * 27 26 25 29 29 N 1.31857 * 120.76541 * 359.97438 * 28 27 26 30 30 C 1.31889 * 121.72235 * 0.02562 * 29 28 27 31 31 H 1.09007 * 109.47392 * 270.18899 * 1 2 3 32 32 H 1.08997 * 109.47488 * 30.18887 * 1 2 3 33 33 H 1.08996 * 109.47126 * 150.18884 * 1 2 3 34 34 H 1.07993 * 126.50384 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.12009 * 359.97164 * 5 4 3 36 36 H 1.08003 * 119.73667 * 180.02562 * 6 5 4 37 37 H 1.08003 * 119.66753 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.10904 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47510 * 149.69648 * 11 10 2 40 40 H 1.09002 * 109.46884 * 29.69074 * 11 10 2 41 41 H 1.09000 * 109.46928 * 30.00295 * 15 14 12 42 42 H 1.09006 * 109.46774 * 149.99687 * 15 14 12 43 43 H 0.96998 * 119.99672 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46632 * 150.00159 * 24 14 12 45 45 H 1.08996 * 109.46728 * 30.00153 * 24 14 12 46 46 H 1.07994 * 120.78944 * 359.96926 * 26 25 24 47 47 H 1.07997 * 120.42083 * 179.72800 * 27 26 25 48 48 H 1.07999 * 119.61954 * 180.02562 * 28 27 26 49 49 H 1.08002 * 119.61237 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 -0.0065 5 6 4.9041 1.2997 -0.0137 6 6 6.0588 0.5695 -0.0181 7 6 6.0158 -0.8181 -0.0160 8 6 4.8098 -1.4836 -0.0090 9 6 3.6215 -0.7603 -0.0044 10 7 2.2925 -1.1203 0.0038 11 6 1.7938 -2.4978 0.0090 12 6 1.6305 -2.9675 1.4315 13 8 1.9041 -2.2249 2.3506 14 7 1.1803 -4.2128 1.6826 15 6 0.8491 -5.1096 0.5724 16 6 -0.6001 -4.9329 0.1990 17 1 -1.2131 -4.2232 0.7347 18 6 -1.1431 -5.6765 -0.8273 19 7 -0.3965 -6.5403 -1.4799 20 14 -2.9394 -5.4569 -1.2907 21 1 -3.1759 -4.0500 -1.7029 22 1 -3.2750 -6.3660 -2.4158 23 1 -3.7954 -5.7806 -0.1211 24 6 1.0220 -4.6697 3.0655 25 6 2.3034 -5.3106 3.5326 26 6 2.5160 -6.6689 3.3509 27 6 3.7074 -7.2162 3.8011 28 6 4.6395 -6.3947 4.4071 29 7 4.4057 -5.1059 4.5582 30 6 3.2838 -4.5512 4.1423 31 1 -0.3634 0.0034 1.0277 32 1 -0.3634 0.8882 -0.5167 33 1 -0.3633 -0.8916 -0.5109 34 1 1.9356 2.1236 0.0004 35 1 4.9453 2.3788 -0.0158 36 1 7.0128 1.0759 -0.0233 37 1 6.9373 -1.3815 -0.0192 38 1 4.7868 -2.5634 -0.0070 39 1 2.5041 -3.1434 -0.5075 40 1 0.8305 -2.5374 -0.4996 41 1 1.4773 -4.8722 -0.2862 42 1 1.0230 -6.1423 0.8753 43 1 -0.7785 -7.0631 -2.2022 44 1 0.2119 -5.3972 3.1173 45 1 0.7875 -3.8185 3.7047 46 1 1.7693 -7.2863 2.8741 47 1 3.9048 -8.2711 3.6802 48 1 5.5704 -6.8133 4.7602 49 1 3.1276 -3.4920 4.2839 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058325762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:20 Heat of formation + Delta-G solvation = 61.686982 kcal Electronic energy + Delta-G solvation = -32693.008960 eV Core-core repulsion = 28585.463855 eV Total energy + Delta-G solvation = -4107.545104 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.21954 -40.10393 -38.94313 -36.89762 -35.40733 -33.31959 -32.71309 -32.18758 -31.47067 -30.92988 -30.02942 -27.80721 -27.29437 -26.39297 -25.25807 -23.50844 -22.97488 -22.14628 -21.57259 -21.27509 -19.74288 -18.58937 -17.11934 -16.97583 -16.79176 -16.49207 -16.10815 -15.86618 -15.50109 -15.21766 -14.89210 -14.71681 -14.50216 -14.12553 -13.85582 -13.58936 -13.46615 -13.10797 -12.90805 -12.86130 -12.84576 -12.68135 -12.56356 -12.36277 -12.07580 -11.97230 -11.66141 -11.55658 -11.41636 -11.27434 -11.10113 -11.04550 -10.91993 -10.59039 -10.38332 -10.03759 -9.67528 -9.54621 -9.31224 -9.22946 -8.84443 -8.72571 -8.01234 -7.79107 -7.32831 -6.38001 -4.47894 1.24107 1.39035 1.46312 1.90252 2.84500 3.04992 3.07176 3.10807 3.17865 3.20085 3.70402 4.10561 4.16315 4.22257 4.61819 4.87635 4.89717 4.93512 4.95893 5.05781 5.09896 5.14212 5.21749 5.24006 5.24709 5.34651 5.46468 5.54892 5.57514 5.66805 5.73413 5.80702 5.83366 5.86487 5.99938 6.05518 6.06133 6.09284 6.22560 6.27578 6.33611 6.43864 6.52119 6.70720 6.83386 6.88710 6.90089 7.04142 7.14562 7.22575 7.52190 7.55308 7.56980 7.81242 8.02153 8.14272 8.55021 8.71774 9.21933 10.68363 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006319 B = 0.004518 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4430.209663 B = 6196.388276 C = 9422.688800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.102 3.898 3 C -0.219 4.219 4 C -0.103 4.103 5 C -0.077 4.077 6 C -0.152 4.152 7 C -0.108 4.108 8 C -0.121 4.121 9 C 0.110 3.890 10 N -0.458 5.458 11 C 0.093 3.907 12 C 0.502 3.498 13 O -0.550 6.550 14 N -0.588 5.588 15 C 0.236 3.764 16 C -0.548 4.548 17 H 0.063 0.937 18 C 0.069 3.931 19 N -0.887 5.887 20 Si 0.897 3.103 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.163 3.837 25 C -0.148 4.148 26 C -0.058 4.058 27 C -0.179 4.179 28 C 0.090 3.910 29 N -0.491 5.491 30 C 0.118 3.882 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.268 0.732 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.137 0.863 47 H 0.132 0.868 48 H 0.150 0.850 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.308 5.341 3.542 8.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.005 4.005 3 C -0.243 4.243 4 C -0.108 4.108 5 C -0.096 4.096 6 C -0.171 4.171 7 C -0.127 4.127 8 C -0.141 4.141 9 C 0.004 3.996 10 N -0.140 5.140 11 C -0.032 4.032 12 C 0.288 3.712 13 O -0.429 6.429 14 N -0.318 5.318 15 C 0.117 3.883 16 C -0.586 4.586 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 C 0.039 3.961 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.199 4.199 28 C -0.067 4.067 29 N -0.199 5.199 30 C -0.039 4.039 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.155 0.845 47 H 0.150 0.850 48 H 0.168 0.832 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 6.908 5.774 4.252 9.956 hybrid contribution -1.651 -0.975 -0.844 2.095 sum 5.256 4.799 3.408 7.891 Atomic orbital electron populations 1.20520 0.88018 1.03610 1.03349 1.20306 0.93508 0.85263 1.01428 1.21279 0.90296 0.97239 1.15491 1.19136 0.93598 0.91910 1.06127 1.20168 0.90574 0.99033 0.99817 1.20517 0.97668 0.93906 1.05014 1.20688 0.96401 0.94382 1.01228 1.20014 0.89976 0.98902 1.05243 1.18160 0.84228 0.93907 1.03350 1.43507 1.03786 1.04901 1.61824 1.21668 1.03989 0.81075 0.96454 1.20646 0.77510 0.82062 0.90992 1.90658 1.51440 1.54832 1.45960 1.48233 1.62975 1.13392 1.07239 1.19500 0.96237 0.89426 0.83173 1.21419 0.95309 1.23961 1.17928 0.91890 1.24938 0.98317 0.94571 0.95675 1.69901 1.36375 1.23947 1.22209 0.86569 0.84427 0.78356 0.78263 1.19951 1.21034 1.20000 1.20134 0.92918 0.99407 0.83676 1.21410 0.99143 0.94680 0.99851 1.21630 0.96997 0.94715 0.95149 1.22107 0.95318 1.01339 1.01092 1.22724 0.98747 0.89500 0.95754 1.67725 1.21316 1.12830 1.18048 1.22838 0.88064 1.00317 0.92693 0.90360 0.90002 0.90840 0.84004 0.86541 0.86559 0.86252 0.86886 0.87151 0.85241 0.94699 0.94306 0.92209 0.88993 0.89672 0.84520 0.85043 0.83250 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.03 36.00 0.36 -0.95 16 2 C 0.10 1.66 6.83 -81.77 -0.56 1.10 16 3 C -0.22 -3.40 10.95 -37.67 -0.41 -3.82 16 4 C -0.10 -1.72 6.37 -105.14 -0.67 -2.39 16 5 C -0.08 -1.11 10.05 -39.65 -0.40 -1.51 16 6 C -0.15 -2.04 9.97 -39.94 -0.40 -2.44 16 7 C -0.11 -1.53 10.01 -39.54 -0.40 -1.93 16 8 C -0.12 -1.99 9.97 -39.43 -0.39 -2.38 16 9 C 0.11 1.95 6.81 -83.99 -0.57 1.38 16 10 N -0.46 -8.07 2.27 -111.14 -0.25 -8.32 16 11 C 0.09 1.64 4.81 -5.19 -0.02 1.62 16 12 C 0.50 9.63 7.74 -10.99 -0.09 9.55 16 13 O -0.55 -11.64 15.57 5.55 0.09 -11.55 16 14 N -0.59 -11.04 2.44 -176.43 -0.43 -11.47 16 15 C 0.24 4.97 4.97 -5.19 -0.03 4.94 16 16 C -0.55 -12.67 9.28 -34.44 -0.32 -12.99 16 17 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 18 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -22.51 13.29 55.43 0.74 -21.78 16 20 Si 0.90 18.94 29.54 -169.99 -5.02 13.92 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 C 0.16 2.73 5.56 -5.19 -0.03 2.70 16 25 C -0.15 -2.36 5.48 -104.48 -0.57 -2.93 16 26 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 27 C -0.18 -2.29 10.11 -39.44 -0.40 -2.69 16 28 C 0.09 1.22 11.18 -17.54 -0.20 1.02 16 29 N -0.49 -8.03 10.36 -13.25 -0.14 -8.16 16 30 C 0.12 1.98 10.86 -17.55 -0.19 1.79 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.01 6.91 -51.93 -0.36 0.65 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.80 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 38 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.11 1.88 7.36 -51.93 -0.38 1.50 16 40 H 0.13 2.28 6.73 -51.93 -0.35 1.93 16 41 H 0.04 0.77 6.44 -51.93 -0.33 0.43 16 42 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 44 H 0.09 1.48 8.03 -51.93 -0.42 1.07 16 45 H 0.08 1.43 7.37 -51.93 -0.38 1.05 16 46 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 47 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 48 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 49 H 0.16 2.75 7.62 -52.49 -0.40 2.35 16 LS Contribution 416.49 15.07 6.28 6.28 Total: -1.00 -29.01 416.49 -11.32 -40.33 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.82 Total: 10.35 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -5.76 Total: -9.60 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.08 Total: -49.73 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.01 -11.32 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058325762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.021 kcal (2) G-P(sol) polarization free energy of solvation -29.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds