Wall clock time and date at job start Tue Mar 31 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34246 * 125.03294 * 2 1 4 4 C 1.46491 * 106.99217 * 180.26694 * 3 2 1 5 5 C 1.39633 * 134.02679 * 179.75809 * 4 3 2 6 6 C 1.36621 * 119.76273 * 179.97438 * 5 4 3 7 7 C 1.38835 * 120.52869 * 0.02562 * 6 5 4 8 8 C 1.37746 * 120.66441 * 359.97438 * 7 6 5 9 9 C 1.39120 * 119.78239 * 0.02562 * 8 7 6 10 10 N 1.36822 * 125.03712 * 179.80669 * 2 1 3 11 11 C 1.46504 * 125.06247 * 359.97438 * 10 2 1 12 12 C 1.50699 * 109.46973 * 269.69460 * 11 10 2 13 13 O 1.21284 * 119.99970 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00222 * 179.97438 * 12 11 10 15 15 C 1.46505 * 119.99626 * 359.97438 * 14 12 11 16 16 C 1.50699 * 109.47198 * 269.99560 * 15 14 12 17 17 H 1.08001 * 119.99641 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99899 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00183 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99986 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47353 * 59.99931 * 20 18 16 22 22 H 1.48496 * 109.47191 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46911 * 300.00114 * 20 18 16 24 24 C 1.46503 * 120.00342 * 179.97438 * 14 12 11 25 25 C 1.50695 * 109.47313 * 270.00350 * 24 14 12 26 26 C 1.38678 * 120.41675 * 270.25293 * 25 24 14 27 27 C 1.38627 * 118.41930 * 180.24221 * 26 25 24 28 28 C 1.38232 * 119.16085 * 359.75178 * 27 26 25 29 29 N 1.31857 * 120.76541 * 359.97438 * 28 27 26 30 30 C 1.31889 * 121.72235 * 0.02562 * 29 28 27 31 31 H 1.09007 * 109.47392 * 270.18899 * 1 2 3 32 32 H 1.08997 * 109.47488 * 30.18887 * 1 2 3 33 33 H 1.08996 * 109.47126 * 150.18884 * 1 2 3 34 34 H 1.07993 * 126.50384 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.12009 * 359.97164 * 5 4 3 36 36 H 1.08003 * 119.73667 * 180.02562 * 6 5 4 37 37 H 1.08003 * 119.66753 * 180.02562 * 7 6 5 38 38 H 1.08006 * 120.10904 * 180.02562 * 8 7 6 39 39 H 1.08999 * 109.47510 * 149.69648 * 11 10 2 40 40 H 1.09002 * 109.46884 * 29.69074 * 11 10 2 41 41 H 1.09000 * 109.46928 * 30.00295 * 15 14 12 42 42 H 1.09006 * 109.46774 * 149.99687 * 15 14 12 43 43 H 0.96998 * 119.99672 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.46632 * 150.00159 * 24 14 12 45 45 H 1.08996 * 109.46728 * 30.00153 * 24 14 12 46 46 H 1.07994 * 120.78944 * 359.96926 * 26 25 24 47 47 H 1.07997 * 120.42083 * 179.72800 * 27 26 25 48 48 H 1.07999 * 119.61954 * 180.02562 * 28 27 26 49 49 H 1.08002 * 119.61237 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0992 0.0000 4 6 3.6705 0.6456 -0.0065 5 6 4.9041 1.2997 -0.0137 6 6 6.0588 0.5695 -0.0181 7 6 6.0158 -0.8181 -0.0160 8 6 4.8098 -1.4836 -0.0090 9 6 3.6215 -0.7603 -0.0044 10 7 2.2925 -1.1203 0.0038 11 6 1.7938 -2.4978 0.0090 12 6 1.6305 -2.9675 1.4315 13 8 1.9041 -2.2249 2.3506 14 7 1.1803 -4.2128 1.6826 15 6 0.8491 -5.1096 0.5724 16 6 -0.6001 -4.9329 0.1990 17 1 -1.2131 -4.2232 0.7347 18 6 -1.1431 -5.6765 -0.8273 19 7 -0.3965 -6.5403 -1.4799 20 14 -2.9394 -5.4569 -1.2907 21 1 -3.1759 -4.0500 -1.7029 22 1 -3.2750 -6.3660 -2.4158 23 1 -3.7954 -5.7806 -0.1211 24 6 1.0220 -4.6697 3.0655 25 6 2.3034 -5.3106 3.5326 26 6 2.5160 -6.6689 3.3509 27 6 3.7074 -7.2162 3.8011 28 6 4.6395 -6.3947 4.4071 29 7 4.4057 -5.1059 4.5582 30 6 3.2838 -4.5512 4.1423 31 1 -0.3634 0.0034 1.0277 32 1 -0.3634 0.8882 -0.5167 33 1 -0.3633 -0.8916 -0.5109 34 1 1.9356 2.1236 0.0004 35 1 4.9453 2.3788 -0.0158 36 1 7.0128 1.0759 -0.0233 37 1 6.9373 -1.3815 -0.0192 38 1 4.7868 -2.5634 -0.0070 39 1 2.5041 -3.1434 -0.5075 40 1 0.8305 -2.5374 -0.4996 41 1 1.4773 -4.8722 -0.2862 42 1 1.0230 -6.1423 0.8753 43 1 -0.7785 -7.0631 -2.2022 44 1 0.2119 -5.3972 3.1173 45 1 0.7875 -3.8185 3.7047 46 1 1.7693 -7.2863 2.8741 47 1 3.9048 -8.2711 3.6802 48 1 5.5704 -6.8133 4.7602 49 1 3.1276 -3.4920 4.2839 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058325762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:19 Heat of formation + Delta-G solvation = 49.955491 kcal Electronic energy + Delta-G solvation = -32693.517675 eV Core-core repulsion = 28585.463855 eV Total energy + Delta-G solvation = -4108.053820 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 363.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45991 -41.35899 -40.37323 -38.06122 -36.98829 -34.91728 -34.13509 -33.49639 -32.68805 -32.07607 -31.21922 -29.40977 -28.70275 -27.56584 -26.59792 -25.03408 -24.39370 -23.36309 -22.76301 -22.43810 -21.03592 -20.01107 -18.76683 -18.43344 -18.01982 -17.92628 -17.30848 -17.12216 -16.94262 -16.59430 -16.35882 -16.01058 -15.79392 -15.48571 -15.06633 -14.79566 -14.67566 -14.41384 -14.32266 -14.27144 -13.99799 -13.96965 -13.82857 -13.57585 -13.51918 -13.25419 -13.15628 -12.95935 -12.90883 -12.60139 -12.53144 -12.35945 -12.28562 -12.10272 -11.79050 -11.72779 -11.10059 -10.78833 -10.63577 -10.52954 -10.46950 -10.02003 -9.60821 -9.00024 -8.52745 -8.23469 -6.38424 0.06903 0.22173 0.29048 0.72960 1.42956 1.44655 1.49932 1.54480 1.58959 1.83236 2.27479 2.42458 2.89253 3.02973 3.08247 3.47036 3.54626 3.68043 3.70249 3.80465 3.85703 3.88607 4.05644 4.06014 4.10922 4.15605 4.25003 4.43123 4.45040 4.55559 4.60177 4.63128 4.69112 4.69525 4.69670 4.78223 4.82583 4.97982 4.99941 5.09786 5.10680 5.18560 5.19315 5.30827 5.56665 5.57736 5.70334 5.71499 5.74402 5.90072 5.98838 5.99752 6.29448 6.34335 6.42687 6.73825 6.96846 7.12867 7.35200 8.81865 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.006319 B = 0.004518 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4430.209663 B = 6196.388276 C = 9422.688800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.078 3.922 3 C -0.218 4.218 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.150 4.150 7 C -0.105 4.105 8 C -0.149 4.149 9 C 0.078 3.922 10 N -0.469 5.469 11 C 0.102 3.898 12 C 0.502 3.498 13 O -0.571 6.571 14 N -0.586 5.586 15 C 0.252 3.748 16 C -0.549 4.549 17 H 0.058 0.942 18 C 0.030 3.970 19 N -0.916 5.916 20 Si 0.950 3.050 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.164 3.836 25 C -0.156 4.156 26 C -0.066 4.066 27 C -0.166 4.166 28 C 0.089 3.911 29 N -0.513 5.513 30 C 0.103 3.897 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.064 0.936 34 H 0.169 0.831 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.145 0.855 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.143 0.857 47 H 0.169 0.831 48 H 0.186 0.814 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.200 5.643 3.574 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.242 4.242 4 C -0.132 4.132 5 C -0.098 4.098 6 C -0.169 4.169 7 C -0.124 4.124 8 C -0.170 4.170 9 C -0.027 4.027 10 N -0.152 5.152 11 C -0.024 4.024 12 C 0.289 3.711 13 O -0.452 6.452 14 N -0.316 5.316 15 C 0.132 3.868 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.171 4.171 19 N -0.554 5.554 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.198 1.198 24 C 0.041 3.959 25 C -0.160 4.160 26 C -0.093 4.093 27 C -0.185 4.185 28 C -0.068 4.068 29 N -0.222 5.222 30 C -0.053 4.053 31 H 0.092 0.908 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.187 0.813 35 H 0.163 0.837 36 H 0.170 0.830 37 H 0.162 0.838 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.144 0.856 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.161 0.839 47 H 0.186 0.814 48 H 0.203 0.797 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 7.792 6.092 4.297 10.784 hybrid contribution -1.784 -1.082 -0.803 2.236 sum 6.008 5.010 3.494 8.568 Atomic orbital electron populations 1.20561 0.86484 1.04614 1.03298 1.20834 0.94731 0.85174 1.02097 1.21671 0.89880 0.98271 1.14413 1.19565 0.95012 0.91688 1.06903 1.20583 0.89924 1.00634 0.98703 1.20955 0.98990 0.93553 1.03387 1.21084 0.96451 0.95306 0.99535 1.20200 0.90809 0.98810 1.07150 1.18575 0.84528 0.95042 1.04549 1.43592 1.04209 1.04795 1.62606 1.21496 1.03731 0.81863 0.95279 1.20896 0.76947 0.81859 0.91414 1.90637 1.52407 1.55334 1.46784 1.48195 1.62694 1.13069 1.07640 1.19170 0.95149 0.89119 0.83385 1.21594 0.96096 1.23388 1.17617 0.92348 1.25551 1.01487 0.94390 0.95709 1.69988 1.37765 1.24880 1.22799 0.85719 0.80531 0.78334 0.77830 1.19428 1.21132 1.19757 1.20177 0.93909 0.99390 0.82471 1.21255 0.98542 0.95476 1.00695 1.21820 0.98124 0.94047 0.95290 1.22491 0.93894 1.03036 0.99099 1.23365 1.00107 0.88507 0.94817 1.67707 1.21125 1.14569 1.18795 1.22583 0.88943 0.99718 0.94076 0.90849 0.87031 0.91740 0.81319 0.83717 0.83018 0.83765 0.87711 0.87321 0.85556 0.95747 0.95203 0.92280 0.88447 0.90211 0.83901 0.81362 0.79688 0.84536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.48 10.03 71.23 0.71 -1.77 16 2 C 0.08 2.56 6.83 40.87 0.28 2.84 16 3 C -0.22 -6.67 10.95 23.51 0.26 -6.41 16 4 C -0.13 -4.20 6.37 -20.20 -0.13 -4.33 16 5 C -0.08 -2.15 10.05 22.23 0.22 -1.93 16 6 C -0.15 -3.67 9.97 22.03 0.22 -3.45 16 7 C -0.10 -2.87 10.01 22.30 0.22 -2.65 16 8 C -0.15 -5.03 9.97 22.37 0.22 -4.80 16 9 C 0.08 2.87 6.81 39.03 0.27 3.13 16 10 N -0.47 -17.16 2.27 -505.52 -1.15 -18.30 16 11 C 0.10 3.79 4.81 85.63 0.41 4.20 16 12 C 0.50 20.20 7.74 87.66 0.68 20.88 16 13 O -0.57 -25.37 15.57 -3.04 -0.05 -25.41 16 14 N -0.59 -22.86 2.44 -830.48 -2.03 -24.88 16 15 C 0.25 10.90 4.97 85.63 0.43 11.32 16 16 C -0.55 -25.69 9.28 25.60 0.24 -25.45 16 17 H 0.06 2.76 7.81 -2.91 -0.02 2.73 16 18 C 0.03 1.45 5.46 84.65 0.46 1.91 16 19 N -0.92 -46.81 13.29 21.45 0.28 -46.53 16 20 Si 0.95 38.66 29.54 68.60 2.03 40.69 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 22 H -0.29 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 24 C 0.16 5.70 5.56 85.63 0.48 6.18 16 25 C -0.16 -5.11 5.48 -19.77 -0.11 -5.22 16 26 C -0.07 -1.88 9.86 22.47 0.22 -1.66 16 27 C -0.17 -3.86 10.11 22.36 0.23 -3.64 16 28 C 0.09 2.23 11.18 84.69 0.95 3.18 16 29 N -0.51 -16.65 10.36 -195.83 -2.03 -18.68 16 30 C 0.10 3.58 10.86 84.67 0.92 4.50 16 31 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.06 1.81 6.91 -2.39 -0.02 1.80 16 34 H 0.17 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 36 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 37 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.10 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.11 3.98 7.36 -2.39 -0.02 3.97 16 40 H 0.13 4.70 6.73 -2.39 -0.02 4.68 16 41 H 0.02 1.11 6.44 -2.39 -0.02 1.10 16 42 H 0.03 1.35 8.07 -2.38 -0.02 1.33 16 43 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 44 H 0.10 3.22 8.03 -2.39 -0.02 3.20 16 45 H 0.08 2.83 7.37 -2.39 -0.02 2.81 16 46 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 47 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 48 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 49 H 0.14 5.16 7.62 -2.91 -0.02 5.13 16 Total: -1.00 -63.48 416.49 5.20 -58.28 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: 0.96 Total: 38.00 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 7.17 Total: -3.17 kcal Atomic # 7 Polarization: -103.48 SS G_CDS: -4.92 Total: -108.39 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.05 Total: -25.41 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -63.48 5.20 -58.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058325762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.236 kcal (2) G-P(sol) polarization free energy of solvation -63.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds