Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34071 * 126.83390 * 2 1 4 4 N 1.21272 * 113.33602 * 179.73520 * 3 2 1 5 5 C 1.30083 * 111.76759 * 359.97438 * 4 3 2 6 6 C 1.35745 * 126.83099 * 179.68144 * 2 1 3 7 7 C 1.46519 * 138.43054 * 0.24109 * 6 2 1 8 8 C 1.48133 * 120.18404 * 0.04591 * 7 6 2 9 9 C 1.39474 * 120.13234 * 312.98277 * 8 7 6 10 10 C 1.37988 * 119.85987 * 179.69690 * 9 8 7 11 11 C 1.38343 * 120.13501 * 0.57383 * 10 9 8 12 12 C 1.38347 * 120.27004 * 359.71923 * 11 10 9 13 13 C 1.37990 * 120.13670 * 359.97438 * 12 11 10 14 14 N 1.30859 * 119.63081 * 180.02562 * 7 6 2 15 15 N 1.39285 * 123.34873 * 359.97438 * 14 7 6 16 16 C 1.46491 * 118.57305 * 180.02562 * 15 14 7 17 17 C 1.52998 * 109.47509 * 270.00239 * 16 15 14 18 18 H 1.09001 * 109.46840 * 305.00193 * 17 16 15 19 19 C 1.47201 * 109.47112 * 64.99593 * 17 16 15 20 20 N 6.47271 * 114.08803 * 153.53162 * 2 1 3 21 21 C 1.53001 * 109.47541 * 184.99775 * 17 16 15 22 22 C 1.50701 * 109.47109 * 174.99935 * 21 17 16 23 23 H 1.08000 * 120.00255 * 0.02562 * 22 21 17 24 24 C 1.37876 * 119.99593 * 180.02562 * 22 21 17 25 25 N 1.31518 * 120.00455 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99714 * 180.02562 * 24 22 21 27 27 H 1.48491 * 109.47147 * 59.99597 * 26 24 22 28 28 H 1.48500 * 109.46966 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46690 * 299.99635 * 26 24 22 30 30 C 1.34931 * 122.85455 * 0.02661 * 15 14 7 31 31 O 1.21699 * 120.61563 * 180.02562 * 30 15 14 32 32 H 1.09001 * 109.47177 * 5.68173 * 1 2 3 33 33 H 1.09002 * 109.47418 * 125.67943 * 1 2 3 34 34 H 1.08995 * 109.47614 * 245.67922 * 1 2 3 35 35 H 1.08001 * 120.06726 * 359.97438 * 9 8 7 36 36 H 1.08000 * 119.93054 * 180.29249 * 10 9 8 37 37 H 1.07993 * 119.86329 * 179.70325 * 11 10 9 38 38 H 1.08000 * 119.93427 * 179.97438 * 12 11 10 39 39 H 1.07990 * 120.07034 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.47120 * 30.00353 * 16 15 14 41 41 H 1.08995 * 109.47276 * 150.00031 * 16 15 14 42 42 H 1.08998 * 109.46913 * 295.00237 * 21 17 16 43 43 H 1.09000 * 109.47080 * 54.99727 * 21 17 16 44 44 H 0.96992 * 120.00265 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3107 1.0731 0.0000 4 7 3.4899 0.7900 0.0051 5 6 3.6770 -0.4973 0.0099 6 6 2.3207 -1.0865 0.0060 7 6 2.1997 -2.5467 0.0101 8 6 0.8621 -3.1831 0.0065 9 6 -0.1272 -2.7386 0.8834 10 6 -1.3732 -3.3314 0.8710 11 6 -1.6384 -4.3724 -0.0007 12 6 -0.6593 -4.8217 -0.8687 13 6 0.5886 -4.2329 -0.8701 14 7 3.2798 -3.2854 0.0165 15 7 4.5686 -2.7572 0.0192 16 6 5.7047 -3.6820 0.0259 17 6 6.0954 -3.9997 1.4706 18 1 6.2879 -3.0708 2.0075 19 6 4.9971 -4.7273 2.1272 20 7 4.1487 -5.2897 2.6337 21 6 7.3573 -4.8648 1.4794 22 6 7.8121 -5.0754 2.9006 23 1 7.2565 -4.6365 3.7161 24 6 8.9377 -5.8285 3.1597 25 7 9.6141 -6.3634 2.1667 26 14 9.5011 -6.0902 4.9215 27 1 8.4281 -6.7730 5.6880 28 1 10.7259 -6.9297 4.9299 29 1 9.7967 -4.7761 5.5469 30 6 4.8162 -1.4308 0.0161 31 8 5.9595 -1.0137 0.0182 32 1 -0.3633 1.0226 -0.1017 33 1 -0.3634 -0.5994 -0.8348 34 1 -0.3634 -0.4232 0.9364 35 1 0.0802 -1.9292 1.5677 36 1 -2.1415 -2.9849 1.5463 37 1 -2.6136 -4.8363 -0.0034 38 1 -0.8721 -5.6351 -1.5467 39 1 1.3520 -4.5842 -1.5484 40 1 5.4265 -4.6032 -0.4862 41 1 6.5501 -3.2227 -0.4864 42 1 7.1397 -5.8293 1.0207 43 1 8.1449 -4.3642 0.9162 44 1 10.4056 -6.8934 2.3490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058342813.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = 128.134910 kcal Electronic energy + Delta-G solvation = -31820.564426 eV Core-core repulsion = 27514.641715 eV Total energy + Delta-G solvation = -4305.922711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.132 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.36841 -40.60024 -39.55740 -37.36844 -36.75234 -34.88048 -34.03005 -33.62475 -33.01313 -31.85791 -31.27596 -30.18541 -28.52291 -27.52653 -25.41241 -25.31111 -23.72142 -22.77519 -22.59385 -21.86348 -20.77887 -19.34073 -18.59912 -18.32176 -17.53542 -17.01662 -16.55762 -16.29473 -15.95645 -15.83243 -15.56770 -15.10044 -14.86666 -14.55771 -14.44903 -14.07112 -13.77437 -13.59545 -13.39621 -13.33689 -13.18578 -12.97690 -12.60063 -12.50882 -12.10912 -11.99505 -11.78831 -11.75785 -11.55254 -11.35982 -11.14739 -11.12262 -10.93733 -10.75029 -10.62700 -10.38236 -10.25886 -10.15276 -9.67462 -9.39989 -9.27589 -9.26039 -8.45901 -8.41965 -6.10398 -4.13764 0.21611 0.74989 0.89369 1.05875 1.78196 1.93757 2.36078 2.95149 2.96595 3.31853 3.35496 3.39409 3.45784 3.54220 3.59938 3.66232 3.74061 4.13992 4.40194 4.49146 4.61586 4.62162 4.69979 4.74862 4.85491 4.90947 4.94086 4.98388 5.10396 5.19791 5.27565 5.29417 5.37068 5.39775 5.52246 5.60821 5.69372 5.72657 5.89194 6.08225 6.13872 6.16225 6.27088 6.41528 6.56967 7.33026 7.38341 7.46251 7.67250 7.74578 7.83657 8.19861 8.42272 8.89200 9.51502 11.00456 Molecular weight = 364.13amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.002901 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.072577 B = 9648.742430 C =11250.231992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.032 3.968 3 O 0.121 5.879 4 N -0.277 5.277 5 C -0.020 4.020 6 C -0.202 4.202 7 C 0.214 3.786 8 C -0.033 4.033 9 C -0.095 4.095 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.119 4.119 13 C -0.076 4.076 14 N -0.208 5.208 15 N -0.420 5.420 16 C 0.137 3.863 17 C -0.008 4.008 18 H 0.104 0.896 19 C 0.240 3.760 20 N -0.460 5.460 21 C 0.036 3.964 22 C -0.527 4.527 23 H 0.055 0.945 24 C 0.065 3.935 25 N -0.890 5.890 26 Si 0.892 3.108 27 H -0.277 1.277 28 H -0.285 1.285 29 H -0.275 1.275 30 C 0.570 3.430 31 O -0.484 6.484 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.105 0.895 41 H 0.121 0.879 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.952 10.637 -9.865 29.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 O 0.049 5.951 4 N 0.024 4.976 5 C -0.185 4.185 6 C -0.210 4.210 7 C 0.028 3.972 8 C -0.036 4.036 9 C -0.115 4.115 10 C -0.138 4.138 11 C -0.123 4.123 12 C -0.137 4.137 13 C -0.096 4.096 14 N -0.016 5.016 15 N -0.240 5.240 16 C 0.016 3.984 17 C -0.031 4.031 18 H 0.122 0.878 19 C -0.077 4.077 20 N -0.137 5.137 21 C -0.003 4.003 22 C -0.565 4.565 23 H 0.074 0.926 24 C -0.138 4.138 25 N -0.529 5.529 26 Si 0.720 3.280 27 H -0.202 1.202 28 H -0.211 1.211 29 H -0.200 1.200 30 C 0.356 3.644 31 O -0.354 6.354 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.123 0.877 41 H 0.139 0.861 42 H 0.049 0.951 43 H 0.062 0.938 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.971 10.084 -9.146 28.441 hybrid contribution 0.502 0.156 0.942 1.079 sum -24.469 10.240 -8.204 27.765 Atomic orbital electron populations 1.20807 0.82382 1.05499 1.05314 1.23967 0.95968 0.84680 0.98780 1.84980 1.10740 1.33164 1.66178 1.73782 0.95280 1.14555 1.14007 1.24271 0.95736 0.90813 1.07640 1.21189 0.92187 0.95158 1.12431 1.20531 0.92195 0.85747 0.98704 1.17963 0.89059 0.97609 0.98937 1.21254 0.92758 0.99918 0.97571 1.21045 0.96523 0.96905 0.99377 1.21312 0.99449 0.96323 0.95248 1.21140 0.93063 1.00032 0.99499 1.21281 0.97050 0.93600 0.97637 1.74689 0.88914 1.26193 1.11802 1.49094 1.03556 1.04306 1.67050 1.22107 0.85220 0.93054 0.98009 1.19637 0.91855 0.99571 0.92035 0.87837 1.28921 0.92731 0.93045 0.93048 1.81020 1.12660 1.10298 1.09707 1.19157 0.88102 0.94191 0.98822 1.21033 1.10870 1.32820 0.91821 0.92628 1.24927 0.96316 0.95296 0.97250 1.69918 1.18123 1.33844 1.30974 0.86636 0.78089 0.78367 0.84912 1.20225 1.21090 1.20025 1.17172 0.86918 0.81785 0.78498 1.90951 1.21274 1.76307 1.46839 0.88962 0.88033 0.87866 0.85410 0.85334 0.85687 0.85388 0.85208 0.87655 0.86095 0.95102 0.93830 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 8.65 36.00 0.31 0.00 16 2 C 0.03 0.28 7.47 -35.20 -0.26 0.02 16 3 O 0.12 1.31 11.10 17.00 0.19 1.50 16 4 N -0.28 -3.98 12.07 34.13 0.41 -3.56 16 5 C -0.02 -0.31 7.82 -80.98 -0.63 -0.94 16 6 C -0.20 -2.42 6.23 -103.51 -0.64 -3.07 16 7 C 0.21 2.69 6.61 -80.88 -0.53 2.16 16 8 C -0.03 -0.33 5.56 -104.92 -0.58 -0.92 16 9 C -0.10 -0.73 7.13 -39.21 -0.28 -1.01 16 10 C -0.12 -0.74 10.03 -39.63 -0.40 -1.13 16 11 C -0.10 -0.65 10.04 -39.50 -0.40 -1.05 16 12 C -0.12 -0.87 10.03 -39.63 -0.40 -1.27 16 13 C -0.08 -0.70 9.69 -39.21 -0.38 -1.08 16 14 N -0.21 -3.13 10.56 34.45 0.36 -2.77 16 15 N -0.42 -6.81 3.31 -61.38 -0.20 -7.02 16 16 C 0.14 2.22 4.98 -4.05 -0.02 2.20 16 17 C -0.01 -0.16 2.42 -93.41 -0.23 -0.39 16 18 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 19 C 0.24 5.13 13.15 -20.73 -0.27 4.86 16 20 N -0.46 -10.41 18.54 42.19 0.78 -9.63 16 21 C 0.04 0.85 4.42 -27.88 -0.12 0.72 16 22 C -0.53 -14.37 8.60 -34.44 -0.30 -14.67 16 23 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 24 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 25 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 26 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 30 C 0.57 9.83 7.73 -12.51 -0.10 9.74 16 31 O -0.48 -9.53 16.64 5.19 0.09 -9.44 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.31 8.00 -51.93 -0.42 -0.10 16 34 H 0.10 0.27 5.51 -51.93 -0.29 -0.01 16 35 H 0.13 0.82 6.03 -52.49 -0.32 0.50 16 36 H 0.13 0.48 8.06 -52.49 -0.42 0.05 16 37 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 38 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.11 1.55 8.14 -51.93 -0.42 1.12 16 41 H 0.12 1.86 7.34 -51.93 -0.38 1.48 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -34.98 388.10 -6.88 -41.86 By element: Atomic # 1 Polarization: 0.33 SS G_CDS: -4.74 Total: -4.41 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -5.33 Total: -4.13 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 2.09 Total: -47.91 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: 0.27 Total: -7.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.98 -6.88 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058342813.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.993 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds