Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46564 * 2 1 4 4 C 1.52994 * 109.47173 * 120.00069 * 2 1 3 5 5 N 1.46499 * 109.47095 * 174.96106 * 4 2 1 6 6 C 1.34784 * 120.00105 * 185.06142 * 5 4 2 7 7 O 1.21277 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99730 * 179.97438 * 6 5 4 9 9 S 1.81005 * 109.47090 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00126 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99500 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00680 * 359.97438 * 12 10 9 14 14 Si 1.86812 * 119.99545 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47157 * 59.99967 * 14 12 10 16 16 H 1.48502 * 109.46686 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.46836 * 299.99711 * 14 12 10 18 18 N 1.46898 * 109.47155 * 240.00349 * 2 1 3 19 19 C 1.46955 * 111.00230 * 71.56640 * 18 2 1 20 20 C 1.53042 * 109.36488 * 176.81263 * 19 18 2 21 21 N 1.46961 * 109.36779 * 58.40289 * 20 19 18 22 22 C 1.39667 * 111.00552 * 176.81139 * 21 20 19 23 23 C 1.38910 * 120.07848 * 123.51625 * 22 21 20 24 24 C 1.38102 * 119.92836 * 179.77400 * 23 22 21 25 25 C 1.38285 * 120.07275 * 0.50720 * 24 23 22 26 26 C 1.38288 * 120.14923 * 359.74775 * 25 24 23 27 27 C 1.38098 * 120.07554 * 359.97438 * 26 25 24 28 28 C 1.46962 * 110.87586 * 300.67751 * 21 20 19 29 29 C 1.46960 * 110.99790 * 307.76392 * 18 2 1 30 30 H 1.08993 * 109.47529 * 59.99941 * 1 2 3 31 31 H 1.08999 * 109.46818 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47200 * 299.99561 * 1 2 3 33 33 H 1.09003 * 109.47128 * 294.95792 * 4 2 1 34 34 H 1.08997 * 109.47515 * 54.95692 * 4 2 1 35 35 H 0.97000 * 119.99937 * 5.06456 * 5 4 2 36 36 H 1.08997 * 109.47781 * 300.00553 * 8 6 5 37 37 H 1.09008 * 109.47239 * 60.01089 * 8 6 5 38 38 H 0.97002 * 120.00250 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.48841 * 296.78077 * 19 18 2 40 40 H 1.08993 * 109.49022 * 56.83879 * 19 18 2 41 41 H 1.08996 * 109.49451 * 298.43377 * 20 19 18 42 42 H 1.09002 * 109.48970 * 178.36223 * 20 19 18 43 43 H 1.08006 * 120.03368 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.96342 * 180.25722 * 24 23 22 45 45 H 1.07998 * 119.92684 * 179.77349 * 25 24 23 46 46 H 1.08003 * 119.95959 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04240 * 179.97438 * 27 26 25 48 48 H 1.08995 * 109.49224 * 299.35473 * 28 21 20 49 49 H 1.09002 * 109.48847 * 179.28414 * 28 21 20 50 50 H 1.08999 * 109.49229 * 303.15940 * 29 18 2 51 51 H 1.09001 * 109.48676 * 63.20051 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8272 1.1900 6 6 4.1645 -1.5179 2.1377 7 8 3.5538 -2.0521 3.0390 8 6 5.6662 -1.6273 2.0764 9 16 6.2572 -2.6100 3.4769 10 6 7.9909 -2.5760 3.1647 11 1 8.3745 -2.0465 2.3051 12 6 8.8636 -3.2299 4.0234 13 7 8.3961 -3.8749 5.0713 14 14 10.7018 -3.1933 3.6927 15 1 11.1781 -1.7868 3.6997 16 1 11.4100 -3.9605 4.7488 17 1 10.9785 -3.8031 2.3674 18 7 2.0197 -0.6924 -1.1995 19 6 1.7863 0.1142 -2.4055 20 6 2.3801 -0.6042 -3.6193 21 7 1.7634 -1.9318 -3.7497 22 6 2.2290 -2.5902 -4.8901 23 6 2.8246 -3.8401 -4.7780 24 6 3.2796 -4.4904 -5.9081 25 6 3.1522 -3.8941 -7.1493 26 6 2.5645 -2.6475 -7.2639 27 6 2.1022 -1.9942 -6.1385 28 6 1.9969 -2.7385 -2.5437 29 6 1.4030 -2.0200 -1.3298 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7523 -0.1579 2.1369 34 1 1.6048 -1.7195 1.2956 35 1 3.9884 -0.4002 0.4689 36 1 5.9576 -2.1116 1.1445 37 1 6.1053 -0.6305 2.1207 38 1 9.0061 -4.3315 5.6716 39 1 0.7144 0.2489 -2.5510 40 1 2.2629 1.0876 -2.2898 41 1 3.4562 -0.7147 -3.4860 42 1 2.1826 -0.0217 -4.5192 43 1 2.9281 -4.3045 -3.8084 44 1 3.7391 -5.4640 -5.8221 45 1 3.5122 -4.4031 -8.0311 46 1 2.4662 -2.1848 -8.2349 47 1 1.6437 -1.0205 -6.2286 48 1 3.0687 -2.8731 -2.3981 49 1 1.5202 -3.7118 -2.6593 50 1 1.6004 -2.6026 -0.4299 51 1 0.3268 -1.9096 -1.4627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058357730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = 10.804087 kcal Electronic energy + Delta-G solvation = -29985.948165 eV Core-core repulsion = 26011.640565 eV Total energy + Delta-G solvation = -3974.307601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.84456 -39.46361 -38.58615 -36.61368 -34.04350 -32.40034 -32.03607 -31.82431 -30.74400 -29.60778 -29.09970 -26.41918 -25.75943 -25.29686 -24.68813 -22.26499 -22.14335 -21.10597 -20.15519 -19.56755 -18.08422 -17.75999 -16.50760 -16.25911 -16.16101 -16.09236 -15.68712 -15.18353 -14.99441 -14.82839 -14.77696 -14.63298 -14.36275 -14.14219 -13.89899 -13.77868 -13.44276 -13.22007 -12.87465 -12.86754 -12.62006 -12.39231 -12.30958 -12.23042 -11.92157 -11.75835 -11.70079 -11.47143 -11.15828 -11.09374 -11.01814 -11.01517 -10.84735 -10.73768 -10.03240 -9.78994 -9.32544 -9.22542 -9.03482 -8.75605 -8.64208 -8.19653 -8.14940 -6.46131 -6.18696 -3.88750 1.09057 1.11934 3.09025 3.19814 3.25262 3.25536 3.29356 3.33356 3.46983 3.61095 3.84654 4.23590 4.37088 4.41362 4.53749 4.67067 4.71999 4.75881 4.85183 4.88715 4.90172 4.93796 5.04038 5.10130 5.14884 5.16199 5.22599 5.24418 5.31127 5.34884 5.41119 5.44132 5.47885 5.52698 5.61262 5.69575 5.71696 5.72675 5.82638 5.91302 5.95355 5.96945 6.12206 6.20878 6.28255 6.43686 6.60011 6.62051 6.73171 6.80488 6.99077 7.62131 7.88277 8.38004 8.73186 9.26466 10.88642 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.002245 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.039849 B =12469.741228 C =14927.856050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.070 3.930 3 H 0.090 0.910 4 C 0.132 3.868 5 N -0.725 5.725 6 C 0.531 3.469 7 O -0.524 6.524 8 C -0.151 4.151 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.071 0.929 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.530 5.530 19 C 0.054 3.946 20 C 0.061 3.939 21 N -0.491 5.491 22 C 0.114 3.886 23 C -0.169 4.169 24 C -0.093 4.093 25 C -0.149 4.149 26 C -0.097 4.097 27 C -0.142 4.142 28 C 0.053 3.947 29 C 0.051 3.949 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.403 0.597 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.046 0.954 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.084 0.916 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.122 0.878 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.089 0.911 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.805 7.678 -24.060 30.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.039 4.039 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.380 5.380 6 C 0.317 3.683 7 O -0.399 6.399 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.200 1.200 18 N -0.255 5.255 19 C -0.074 4.074 20 C -0.064 4.064 21 N -0.206 5.206 22 C 0.016 3.984 23 C -0.190 4.190 24 C -0.111 4.111 25 C -0.168 4.168 26 C -0.116 4.116 27 C -0.163 4.163 28 C -0.074 4.074 29 C -0.076 4.076 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.076 0.924 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.806 6.734 -22.303 29.323 hybrid contribution 1.928 0.784 -1.659 2.662 sum -15.877 7.518 -23.962 29.712 Atomic orbital electron populations 1.22376 0.96251 1.02930 1.02700 1.21974 0.93607 0.98489 0.89844 0.89177 1.21274 0.81516 1.00619 0.95922 1.45794 1.06626 1.56153 1.29391 1.20273 0.89487 0.77451 0.81137 1.90692 1.69453 1.45529 1.34276 1.23504 0.93816 1.05732 1.07128 1.85369 1.04612 1.65383 1.28117 1.22830 0.91632 1.39278 1.14555 0.91036 1.24986 0.99522 0.94583 0.94494 1.70009 1.35534 1.31655 1.13153 0.86240 0.82903 0.78349 0.78097 1.19962 1.20833 1.19953 1.62327 1.58055 1.03034 1.02064 1.22203 0.99695 0.96541 0.88943 1.22297 0.97607 0.88141 0.98390 1.59282 1.55151 1.04249 1.01966 1.18959 0.94374 0.94067 0.91012 1.21388 1.01292 0.96679 0.99635 1.21053 0.98227 0.99506 0.92362 1.21085 1.02035 0.96121 0.97575 1.21005 0.97532 0.94989 0.98076 1.20764 1.03401 1.00993 0.91098 1.22369 1.00734 0.96477 0.87850 1.22267 0.97205 0.90181 0.97994 0.92090 0.91710 0.91453 0.91456 0.91584 0.76248 0.89373 0.89421 0.92173 0.93543 0.89775 0.92734 0.89771 0.85417 0.85996 0.86272 0.86045 0.85986 0.92350 0.89599 0.89312 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 8.41 37.16 0.31 -0.93 16 2 C 0.07 0.55 2.44 -67.72 -0.17 0.38 16 3 H 0.09 0.65 8.00 -51.93 -0.42 0.23 16 4 C 0.13 1.47 4.89 -4.04 -0.02 1.45 16 5 N -0.73 -9.71 5.35 -60.30 -0.32 -10.03 16 6 C 0.53 9.96 7.85 -10.98 -0.09 9.88 16 7 O -0.52 -11.99 15.86 5.56 0.09 -11.90 16 8 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.53 -15.37 9.50 30.94 0.29 -15.07 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.11 5.50 -17.43 -0.10 2.01 16 13 N -0.87 -26.36 13.22 55.49 0.73 -25.63 16 14 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 N -0.53 -4.30 4.16 -226.50 -0.94 -5.25 16 19 C 0.05 0.37 5.36 -3.77 -0.02 0.35 16 20 C 0.06 0.47 5.38 -3.77 -0.02 0.45 16 21 N -0.49 -4.32 4.75 -170.96 -0.81 -5.13 16 22 C 0.11 1.06 5.64 -83.79 -0.47 0.59 16 23 C -0.17 -1.59 8.82 -39.38 -0.35 -1.94 16 24 C -0.09 -0.80 10.04 -39.61 -0.40 -1.20 16 25 C -0.15 -1.19 10.04 -39.55 -0.40 -1.58 16 26 C -0.10 -0.75 10.04 -39.61 -0.40 -1.15 16 27 C -0.14 -1.20 9.19 -39.38 -0.36 -1.56 16 28 C 0.05 0.47 4.29 -3.76 -0.02 0.45 16 29 C 0.05 0.45 4.71 -3.76 -0.02 0.43 16 30 H 0.06 0.38 6.82 -51.93 -0.35 0.03 16 31 H 0.06 0.47 6.39 -51.93 -0.33 0.14 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.82 6.77 -51.93 -0.35 0.47 16 35 H 0.40 4.61 8.23 -40.82 -0.34 4.27 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.05 0.33 6.82 -51.93 -0.35 -0.03 16 40 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.54 6.82 -51.93 -0.35 0.19 16 43 H 0.13 1.13 5.81 -52.48 -0.31 0.83 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 47 H 0.12 0.86 7.19 -52.49 -0.38 0.48 16 48 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 49 H 0.09 0.73 7.18 -51.93 -0.37 0.36 16 50 H 0.09 0.88 6.51 -51.93 -0.34 0.55 16 51 H 0.05 0.42 6.41 -51.93 -0.33 0.09 16 LS Contribution 412.61 15.07 6.22 6.22 Total: -1.00 -34.45 412.61 -12.22 -46.67 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.96 Total: 2.70 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.99 Total: -10.31 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -1.34 Total: -46.03 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.45 -12.22 -46.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058357730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.476 kcal (2) G-P(sol) polarization free energy of solvation -34.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds