Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46564 * 2 1 4 4 C 1.52994 * 109.47173 * 120.00069 * 2 1 3 5 5 N 1.46499 * 109.47095 * 174.96106 * 4 2 1 6 6 C 1.34784 * 120.00105 * 185.06142 * 5 4 2 7 7 O 1.21277 * 120.00040 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99730 * 179.97438 * 6 5 4 9 9 S 1.81005 * 109.47090 * 180.02562 * 8 6 5 10 10 C 1.76199 * 100.00126 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99951 * 0.02562 * 10 9 8 12 12 C 1.38797 * 119.99500 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00680 * 359.97438 * 12 10 9 14 14 Si 1.86812 * 119.99545 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47157 * 59.99967 * 14 12 10 16 16 H 1.48502 * 109.46686 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.46836 * 299.99711 * 14 12 10 18 18 N 1.46898 * 109.47155 * 240.00349 * 2 1 3 19 19 C 1.46955 * 111.00230 * 71.56640 * 18 2 1 20 20 C 1.53042 * 109.36488 * 176.81263 * 19 18 2 21 21 N 1.46961 * 109.36779 * 58.40289 * 20 19 18 22 22 C 1.39667 * 111.00552 * 176.81139 * 21 20 19 23 23 C 1.38910 * 120.07848 * 123.51625 * 22 21 20 24 24 C 1.38102 * 119.92836 * 179.77400 * 23 22 21 25 25 C 1.38285 * 120.07275 * 0.50720 * 24 23 22 26 26 C 1.38288 * 120.14923 * 359.74775 * 25 24 23 27 27 C 1.38098 * 120.07554 * 359.97438 * 26 25 24 28 28 C 1.46962 * 110.87586 * 300.67751 * 21 20 19 29 29 C 1.46960 * 110.99790 * 307.76392 * 18 2 1 30 30 H 1.08993 * 109.47529 * 59.99941 * 1 2 3 31 31 H 1.08999 * 109.46818 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47200 * 299.99561 * 1 2 3 33 33 H 1.09003 * 109.47128 * 294.95792 * 4 2 1 34 34 H 1.08997 * 109.47515 * 54.95692 * 4 2 1 35 35 H 0.97000 * 119.99937 * 5.06456 * 5 4 2 36 36 H 1.08997 * 109.47781 * 300.00553 * 8 6 5 37 37 H 1.09008 * 109.47239 * 60.01089 * 8 6 5 38 38 H 0.97002 * 120.00250 * 180.02562 * 13 12 10 39 39 H 1.09007 * 109.48841 * 296.78077 * 19 18 2 40 40 H 1.08993 * 109.49022 * 56.83879 * 19 18 2 41 41 H 1.08996 * 109.49451 * 298.43377 * 20 19 18 42 42 H 1.09002 * 109.48970 * 178.36223 * 20 19 18 43 43 H 1.08006 * 120.03368 * 0.02562 * 23 22 21 44 44 H 1.08003 * 119.96342 * 180.25722 * 24 23 22 45 45 H 1.07998 * 119.92684 * 179.77349 * 25 24 23 46 46 H 1.08003 * 119.95959 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.04240 * 179.97438 * 27 26 25 48 48 H 1.08995 * 109.49224 * 299.35473 * 28 21 20 49 49 H 1.09002 * 109.48847 * 179.28414 * 28 21 20 50 50 H 1.08999 * 109.49229 * 303.15940 * 29 18 2 51 51 H 1.09001 * 109.48676 * 63.20051 * 29 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8272 1.1900 6 6 4.1645 -1.5179 2.1377 7 8 3.5538 -2.0521 3.0390 8 6 5.6662 -1.6273 2.0764 9 16 6.2572 -2.6100 3.4769 10 6 7.9909 -2.5760 3.1647 11 1 8.3745 -2.0465 2.3051 12 6 8.8636 -3.2299 4.0234 13 7 8.3961 -3.8749 5.0713 14 14 10.7018 -3.1933 3.6927 15 1 11.1781 -1.7868 3.6997 16 1 11.4100 -3.9605 4.7488 17 1 10.9785 -3.8031 2.3674 18 7 2.0197 -0.6924 -1.1995 19 6 1.7863 0.1142 -2.4055 20 6 2.3801 -0.6042 -3.6193 21 7 1.7634 -1.9318 -3.7497 22 6 2.2290 -2.5902 -4.8901 23 6 2.8246 -3.8401 -4.7780 24 6 3.2796 -4.4904 -5.9081 25 6 3.1522 -3.8941 -7.1493 26 6 2.5645 -2.6475 -7.2639 27 6 2.1022 -1.9942 -6.1385 28 6 1.9969 -2.7385 -2.5437 29 6 1.4030 -2.0200 -1.3298 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.7523 -0.1579 2.1369 34 1 1.6048 -1.7195 1.2956 35 1 3.9884 -0.4002 0.4689 36 1 5.9576 -2.1116 1.1445 37 1 6.1053 -0.6305 2.1207 38 1 9.0061 -4.3315 5.6716 39 1 0.7144 0.2489 -2.5510 40 1 2.2629 1.0876 -2.2898 41 1 3.4562 -0.7147 -3.4860 42 1 2.1826 -0.0217 -4.5192 43 1 2.9281 -4.3045 -3.8084 44 1 3.7391 -5.4640 -5.8221 45 1 3.5122 -4.4031 -8.0311 46 1 2.4662 -2.1848 -8.2349 47 1 1.6437 -1.0205 -6.2286 48 1 3.0687 -2.8731 -2.3981 49 1 1.5202 -3.7118 -2.6593 50 1 1.6004 -2.6026 -0.4299 51 1 0.3268 -1.9096 -1.4627 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058357730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -12.688933 kcal Electronic energy + Delta-G solvation = -29986.966899 eV Core-core repulsion = 26011.640565 eV Total energy + Delta-G solvation = -3975.326334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 363.172 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.51850 -40.60391 -39.55217 -37.37004 -35.19456 -34.57765 -32.79428 -32.56369 -31.37400 -30.90657 -29.91582 -27.73562 -27.09396 -26.48777 -25.34076 -22.93698 -22.76699 -21.82964 -21.59623 -20.26662 -19.75650 -18.71100 -17.70952 -17.37961 -17.21017 -16.87419 -16.73786 -16.46499 -16.27148 -15.95727 -15.76041 -15.54957 -15.30192 -15.10287 -14.76110 -14.64572 -14.49037 -14.36135 -14.14141 -13.89017 -13.65219 -13.33534 -13.16283 -13.00923 -12.95270 -12.86487 -12.85276 -12.62153 -12.56131 -12.30239 -12.18464 -11.79116 -11.75585 -11.72751 -11.52377 -11.12614 -10.91778 -10.68548 -10.27012 -10.00644 -9.85871 -9.30690 -8.80812 -8.65613 -8.33914 -6.11835 0.45418 0.48658 1.27979 1.43771 1.47315 1.57672 1.67943 2.27388 2.35983 2.62427 2.82558 2.96641 2.99811 3.34739 3.68077 3.74659 3.90021 4.01538 4.07354 4.07861 4.12927 4.22049 4.27383 4.28776 4.31263 4.33018 4.39317 4.46979 4.52696 4.57047 4.61498 4.61911 4.67671 4.76091 4.78950 4.82800 4.87470 4.93153 5.04525 5.05555 5.12660 5.27044 5.31587 5.41809 5.51332 5.52175 5.66329 5.82343 5.95053 6.03423 6.09117 6.20115 6.34180 6.61683 7.07063 7.32882 8.75022 Molecular weight = 363.17amu Principal moments of inertia in cm(-1) A = 0.008710 B = 0.002245 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.039849 B =12469.741228 C =14927.856050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.109 0.891 4 C 0.130 3.870 5 N -0.698 5.698 6 C 0.532 3.468 7 O -0.571 6.571 8 C -0.127 4.127 9 S -0.150 6.150 10 C -0.547 4.547 11 H 0.081 0.919 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.998 3.002 15 H -0.262 1.262 16 H -0.278 1.278 17 H -0.263 1.263 18 N -0.538 5.538 19 C 0.059 3.941 20 C 0.062 3.938 21 N -0.491 5.491 22 C 0.098 3.902 23 C -0.188 4.188 24 C -0.105 4.105 25 C -0.156 4.156 26 C -0.100 4.100 27 C -0.149 4.149 28 C 0.058 3.942 29 C 0.058 3.942 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.416 0.584 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.271 0.729 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.099 0.901 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.136 0.864 48 H 0.041 0.959 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 9.764 -26.805 32.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.028 4.028 3 H 0.127 0.873 4 C 0.005 3.995 5 N -0.351 5.351 6 C 0.318 3.682 7 O -0.451 6.451 8 C -0.278 4.278 9 S 0.077 5.923 10 C -0.694 4.694 11 H 0.099 0.901 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.186 1.186 16 H -0.203 1.203 17 H -0.187 1.187 18 N -0.263 5.263 19 C -0.069 4.069 20 C -0.064 4.064 21 N -0.207 5.207 22 C 0.000 4.000 23 C -0.209 4.209 24 C -0.124 4.124 25 C -0.174 4.174 26 C -0.118 4.118 27 C -0.169 4.169 28 C -0.069 4.069 29 C -0.070 4.070 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.254 0.746 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.058 0.942 42 H 0.117 0.883 43 H 0.141 0.859 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.154 0.846 48 H 0.060 0.940 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.577 8.860 -25.105 31.901 hybrid contribution 1.748 0.164 -0.916 1.980 sum -15.829 9.024 -26.020 31.766 Atomic orbital electron populations 1.22321 0.95058 1.02721 1.03590 1.21888 0.94347 0.98531 0.87985 0.87341 1.21453 0.79545 1.00472 0.97985 1.45554 1.07731 1.53904 1.27879 1.20000 0.88779 0.77830 0.81602 1.90680 1.69966 1.47938 1.36480 1.23340 0.95176 1.05224 1.04090 1.85538 1.05876 1.67899 1.33010 1.23163 0.91754 1.39526 1.14999 0.90075 1.26127 1.05222 0.93814 0.94000 1.70177 1.37544 1.32661 1.14363 0.85017 0.75750 0.78965 0.78343 1.18632 1.20329 1.18714 1.62302 1.58238 1.02964 1.02825 1.22240 1.00129 0.96776 0.87734 1.22357 0.96725 0.87787 0.99503 1.59349 1.55175 1.04606 1.01545 1.19154 0.94868 0.94265 0.91666 1.21498 1.02294 0.97257 0.99866 1.21284 0.98389 1.00123 0.92608 1.21388 1.01731 0.96421 0.97901 1.21341 0.96664 0.94857 0.98970 1.20991 1.03398 1.01629 0.90861 1.22263 0.99594 0.96714 0.88374 1.22135 0.97425 0.90460 0.96990 0.90856 0.92513 0.90865 0.91520 0.92955 0.74642 0.87826 0.87485 0.91995 0.93038 0.87965 0.94158 0.88272 0.85950 0.85032 0.84385 0.83678 0.84617 0.94037 0.89849 0.91024 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.41 71.98 0.61 -1.41 16 2 C 0.08 1.09 2.44 44.91 0.11 1.20 16 3 H 0.11 1.16 8.00 -2.39 -0.02 1.14 16 4 C 0.13 2.77 4.89 86.38 0.42 3.20 16 5 N -0.70 -17.86 5.35 -463.07 -2.48 -20.33 16 6 C 0.53 19.98 7.85 87.65 0.69 20.67 16 7 O -0.57 -26.85 15.86 -3.02 -0.05 -26.90 16 8 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 9 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 10 C -0.55 -31.64 9.50 67.95 0.65 -30.99 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 12 C 0.01 0.75 5.50 84.86 0.47 1.22 16 13 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 14 Si 1.00 44.00 29.55 68.60 2.03 46.02 16 15 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 18 N -0.54 -7.78 4.16 -870.50 -3.62 -11.40 16 19 C 0.06 0.65 5.36 86.31 0.46 1.12 16 20 C 0.06 0.83 5.38 86.31 0.46 1.29 16 21 N -0.49 -8.23 4.75 -694.78 -3.30 -11.54 16 22 C 0.10 1.78 5.64 38.22 0.22 2.00 16 23 C -0.19 -3.60 8.82 22.40 0.20 -3.40 16 24 C -0.11 -1.78 10.04 22.25 0.22 -1.56 16 25 C -0.16 -2.25 10.04 22.29 0.22 -2.03 16 26 C -0.10 -1.35 10.04 22.25 0.22 -1.13 16 27 C -0.15 -2.27 9.19 22.40 0.21 -2.06 16 28 C 0.06 1.05 4.29 86.31 0.37 1.42 16 29 C 0.06 0.98 4.71 86.31 0.41 1.39 16 30 H 0.07 0.69 6.82 -2.39 -0.02 0.68 16 31 H 0.06 0.75 6.39 -2.39 -0.02 0.74 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.05 1.31 6.77 -2.39 -0.02 1.29 16 35 H 0.42 8.59 8.23 -92.71 -0.76 7.83 16 36 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 37 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.05 0.56 6.82 -2.38 -0.02 0.54 16 40 H 0.10 0.81 8.06 -2.39 -0.02 0.79 16 41 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.10 1.03 6.82 -2.39 -0.02 1.02 16 43 H 0.12 2.33 5.81 -2.91 -0.02 2.32 16 44 H 0.13 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 46 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.14 1.61 7.19 -2.91 -0.02 1.59 16 48 H 0.04 0.88 7.57 -2.39 -0.02 0.86 16 49 H 0.08 1.50 7.18 -2.39 -0.02 1.48 16 50 H 0.07 1.46 6.51 -2.39 -0.02 1.44 16 51 H 0.05 0.87 6.41 -2.39 -0.02 0.85 16 Total: -1.00 -77.07 412.61 -1.76 -78.83 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.17 Total: 25.00 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 6.37 Total: -13.81 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -9.12 Total: -99.49 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -77.07 -1.76 -78.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058357730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.141 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds